Clone Information

BLAST Search Result

Clone Name	bart45c05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TT12_ARATH (Q9LYT3) TRANSPARENT TESTA 12 protein	82	8e-16
2	YD338_YEAST (Q05497) Hypothetical 77.8 kDa protein in MRPS28-HXT...	74	2e-13
3	YHJ2_YEAST (P38767) Hypothetical 64.2 kDa protein in SLT2-PUT2 i...	73	5e-13
4	YAO6_SCHPO (Q10085) Hypothetical protein C11D3.06 in chromosome I	63	5e-10
5	NORM_RHOPA (Q6NB79) Probable multidrug resistance protein norM (...	52	1e-06
6	NORM_BORPA (Q7WAK9) Probable multidrug resistance protein norM (...	44	3e-04
7	NORM_BORBR (Q7WJR0) Probable multidrug resistance protein norM (...	44	3e-04
8	NORM_RHILO (Q98D15) Probable multidrug resistance protein norM (...	43	7e-04
9	NORM_BURVI (Q9F5N7) Multidrug resistance protein norM (Multidrug...	41	0.003
10	NORM_PSESM (Q88BA2) Probable multidrug resistance protein norM (...	40	0.006
11	NORM_LISMO (Q8Y654) Probable multidrug resistance protein norM (...	40	0.006
12	NORM_LISMF (Q71YH0) Probable multidrug resistance protein norM (...	39	0.013
13	NORM_LISIN (Q92AG2) Probable multidrug resistance protein norM (...	39	0.013
14	NORM_BRUSU (Q8G2I1) Probable multidrug resistance protein norM (...	38	0.017
15	NORM_BRUME (Q8YFD7) Probable multidrug resistance protein norM (...	38	0.017
16	PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regula...	37	0.038
17	NORM_BACHK (Q6HLG9) Probable multidrug resistance protein norM (...	37	0.049
18	NORM_BACCZ (Q63DZ4) Probable multidrug resistance protein norM (...	37	0.049
19	NORM_BACAN (Q81T85) Probable multidrug resistance protein norM (...	36	0.064
20	PMPM_PSEAE (Q9I3Y3) Multidrug resistance protein pmpM (H(+)/drug...	36	0.084
21	DINF_ECOLI (P28303) DNA-damage-inducible protein F	35	0.11
22	NORM_PSEPK (Q88CB9) Probable multidrug resistance protein norM (...	35	0.19
23	PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regu...	34	0.24
24	PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regu...	34	0.24
25	PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regu...	34	0.24
26	NORM_AZOSE (Q5NYX9) Probable multidrug resistance protein norM (...	33	0.42
27	PP1RA_MOUSE (Q80W00) Serine/threonine-protein phosphatase 1 regu...	33	0.42
28	NORM_GEOKA (Q5KZL2) Probable multidrug resistance protein norM (...	33	0.54
29	NORM_BACC1 (Q73BB8) Probable multidrug resistance protein norM (...	33	0.54
30	NUDH_RALEJ (Q46X20) Probable (di)nucleoside polyphosphate hydrol...	32	1.2
31	NORM_XANAC (Q8PG07) Probable multidrug resistance protein norM (...	32	1.2
32	NORM_XYLFT (Q879Z5) Probable multidrug resistance protein norM (...	31	2.1
33	NORM_XYLFA (Q9PA34) Probable multidrug resistance protein norM (...	31	2.1
34	HXD11_MOUSE (P23813) Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5)	31	2.7
35	PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regula...	30	3.5
36	ZN326_MOUSE (O88291) Zinc finger protein 326 (Zinc finger protei...	30	4.6
37	MDTB_PHOLL (Q7N3E2) Multidrug resistance protein mdtB (Multidrug...	30	4.6
38	GANC_MACFA (Q9BE70) Neutral alpha-glucosidase C (EC 3.2.1.-) (Fr...	29	7.9
39	YEEO_ECOLI (P76352) Hypothetical protein yeeO	29	7.9
40	CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox prote...	29	7.9
41	AGLU_SPIOL (O04893) Alpha-glucosidase precursor (EC 3.2.1.20) (M...	29	7.9
42	GANC_HUMAN (Q8TET4) Neutral alpha-glucosidase C (EC 3.2.1.20)	29	7.9

>TT12_ARATH (Q9LYT3) TRANSPARENT TESTA 12 protein|
          Length = 507

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 41/135 (30%), Positives = 77/135 (57%)
 Frame = +1

Query: 148 RPSSCSPAWLRRLIDTEEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATL 327
           R S+ +P W  +L   E           +V++ ++Y  +  V+VMF+GHLG++ LAGA++
Sbjct: 35  RGSTVTPRWWLKLAVWESKLLWTLSGASIVVSVLNYM-LSFVTVMFTGHLGSLQLAGASI 93

Query: 328 ANSWANVTGYAFVTGMSGALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLF 507
           A        Y  + GM+ A++T+CGQAYGAR Y  +G+  Q ++++    ++ +  L+ +
Sbjct: 94  ATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWY 153

Query: 508 TEPLLLCLHQEPEVS 552
           + P+L  + Q   ++
Sbjct: 154 SGPILKTMGQSVAIA 168

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>YD338_YEAST (Q05497) Hypothetical 77.8 kDa protein in MRPS28-HXT7 intergenic|
           region
          Length = 695

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 40/117 (34%), Positives = 68/117 (58%)
 Frame = +1

Query: 199 EAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANSWANVTGYAFVTGMS 378
           EA     ++ P++ T +     P+V  +  GHLG   LA  +LA+  +N+T  A   G++
Sbjct: 228 EARVLASYSFPLIFTFLLEQIFPMVCSLTVGHLGKNELAAVSLASMTSNIT-LAIFEGIA 286

Query: 379 GALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLLCLHQEPEV 549
            +L+TLC QAYG+  +  +G++LQ  +  S V+ +  AV+W ++EPLL  +  E E+
Sbjct: 287 TSLDTLCPQAYGSGRFYSVGVHLQRCIAFSLVIYIPFAVMWWYSEPLLSYIIPEKEL 343

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>YHJ2_YEAST (P38767) Hypothetical 64.2 kDa protein in SLT2-PUT2 intergenic|
           region
          Length = 581

 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
 Frame = +1

Query: 130 GGEGEARPSSCSPAWLRRL-----IDT---EEAWAQLQFAVPMVLTNMSYYGIPLVSVMF 285
           G + E RP+  +  W   +     I T    E       A+P++ T +    + L S+  
Sbjct: 133 GPDEEERPAEIANTWESAIESGQKISTTFKRETQVITMNALPLIFTFILQNSLSLASIFS 192

Query: 286 SGHLGNVHLAGATLANSWANVTGYAFVTGMSGALETLCGQAYGARLYRMLGLYLQSSLIM 465
             HLG   L G TL +  AN+TG A + G+   L+TLC QAYGA+ Y ++G+ +Q   ++
Sbjct: 193 VSHLGTKELGGVTLGSMTANITGLAAIQGLCTCLDTLCAQAYGAKNYHLVGVLVQRCAVI 252

Query: 466 SAVVSMVIAVLW-LFTEPLLLCLHQEPEV 549
           + +  + +  +W +++E +L  +  E E+
Sbjct: 253 TILAFLPMMYVWFVWSEKILALMIPEREL 281

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>YAO6_SCHPO (Q10085) Hypothetical protein C11D3.06 in chromosome I|
          Length = 455

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 33/110 (30%), Positives = 62/110 (56%)
 Frame = +1

Query: 223 AVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANSWANVTGYAFVTGMSGALETLCG 402
           + P++L       +   SV+ +G LG   L+ A  A  +A  TG+    G + A +TL  
Sbjct: 15  SAPVILGYALQNSLQTSSVIVTGRLGPSELSVAAFAYMFAMSTGWLIALGGTTAFDTLGS 74

Query: 403 QAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLLCLHQEPEVS 552
             +GA   + LG+ LQ+  I+ +++ + I ++W +++P+L+ LHQ PE++
Sbjct: 75  NLWGAGKKQELGILLQTGFIVLSILYLPICLVWWYSKPILIFLHQTPELA 124

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>NORM_RHOPA (Q6NB79) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 474

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 38/130 (29%), Positives = 59/130 (45%)
 Frame = +1

Query: 163 SPAWLRRLIDTEEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANSWA 342
           S AW   LI+T      L  A PM LT +    +    +   G LG+  +A A LA+ + 
Sbjct: 22  SSAWRTELIET------LWLAWPMALTQLGQIAMMTTDLALIGRLGDAAVAAAALAH-FV 74

Query: 343 NVTGYAFVTGMSGALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLL 522
             + +    G+  A+  L  QA+GAR  R +   L+  L    +  + + +  L+ E LL
Sbjct: 75  LFSTFTMGLGLVSAVTPLAAQAFGARAPRQVRASLRVGLWAGVIAGVPLTLGQLYGEELL 134

Query: 523 LCLHQEPEVS 552
           + L Q P  S
Sbjct: 135 VALGQNPATS 144

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>NORM_BORPA (Q7WAK9) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 460

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
 Frame = +1

Query: 154 SSCSPAWLRRLIDTEEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLAN 333
           S+   AW R L  T      L   +P+VLTN++   + +  V+F G LG+  LA + L  
Sbjct: 4   STARAAWKRELAAT------LALGLPLVLTNLAQMAMTVTDVIFIGRLGSQALAASALGA 57

Query: 334 SWANVTGYAFVTGMSGALETLCGQAYGAR--LYRMLGLYLQSSLIMSAVVSMVIAVLWLF 507
           +      + F  G+  A   +   A G R    R +   ++  L  + + S+   +L   
Sbjct: 58  NLFTAIEF-FGLGLVAATAPMVAHALGRRGNTVRDVRRTVRQGLWTAVIYSVPGCLLLWH 116

Query: 508 TEPLLLCLHQEPEVS 552
            E +LL + Q PE++
Sbjct: 117 GEAILLAIDQPPELA 131

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>NORM_BORBR (Q7WJR0) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 460

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
 Frame = +1

Query: 154 SSCSPAWLRRLIDTEEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLAN 333
           S+   AW R L  T      L   +P+VLTN++   + +  V+F G LG+  LA + L  
Sbjct: 4   STARAAWKRELAAT------LALGLPLVLTNLAQMAMTVTDVIFIGRLGSQALAASALGA 57

Query: 334 SWANVTGYAFVTGMSGALETLCGQAYGAR--LYRMLGLYLQSSLIMSAVVSMVIAVLWLF 507
           +      + F  G+  A   +   A G R    R +   ++  L  + + S+   +L   
Sbjct: 58  NLFTAIEF-FGLGLVAATAPMVAHALGRRGNAVRDVRRTVRQGLWTAVIYSVPGCLLLWH 116

Query: 508 TEPLLLCLHQEPEVS 552
            E +LL + Q PE++
Sbjct: 117 GEAILLAIDQPPELA 131

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>NORM_RHILO (Q98D15) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 467

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
 Frame = +1

Query: 196 EEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANSWANVTGYAFVTGM 375
           +E  A L  A PMVLTN+    +    VM  G LG   LA   L    AN+     + G+
Sbjct: 17  QEIRATLALAWPMVLTNLGQTAMTATDVMMMGRLGPDTLASGALG---ANLYFMPLIFGL 73

Query: 376 SGALET--LCGQAYGARLY--RMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLLCLHQEP 543
              L T  +     G R Y  R L   ++  L ++ ++S+ I ++    E +LL + QEP
Sbjct: 74  GLMLATSPMIATELGRRRYSVRDLRRTVRQGLWLAILISIPIWIVLWHGEAILLAMGQEP 133

Query: 544 EVS 552
            ++
Sbjct: 134 ALA 136

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>NORM_BURVI (Q9F5N7) Multidrug resistance protein norM (Multidrug-efflux|
           transporter)
          Length = 462

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 3/141 (2%)
 Frame = +1

Query: 139 GEARPSSCSPAWLRRLIDTEEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAG 318
           G  R ++  P+  R  +DT       + A P+ +  +S   + +   +  G LG   LA 
Sbjct: 5   GLTRTAAAPPSLSRHAVDTA------RLAAPLAIAQLSQMAMSVTDTVLLGSLGPDSLAA 58

Query: 319 ATLANSWANVTGYAFVTGMSGALETLC---GQAYGARLYRMLGLYLQSSLIMSAVVSMVI 489
             L  ++     +  VT + G L ++      A GA+    +     +  ++S ++++  
Sbjct: 59  GGLGANFF----FVIVTVLQGVLSSVSVSVAHARGAQAEHRVPHIYWTGFVLSVLLAIPA 114

Query: 490 AVLWLFTEPLLLCLHQEPEVS 552
            V    +EPLLL  H+ P ++
Sbjct: 115 VVALSLSEPLLLMFHEPPTLA 135

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>NORM_PSESM (Q88BA2) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 460

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 29/114 (25%), Positives = 55/114 (48%)
 Frame = +1

Query: 196 EEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANSWANVTGYAFVTGM 375
           +E W  L+ A P++ + M++  +     +  G +G   LAG  L  +  +   + F  G+
Sbjct: 7   KELWIILRLAGPLIASQMAHMLMVFTDTVMMGKIGPEALAGGGLGAATYSFISF-FCVGV 65

Query: 376 SGALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLLCLHQ 537
             A+ TL    +GA     +    Q+ L ++  ++++ A+L    EP+LL L Q
Sbjct: 66  MAAVGTLVSIRHGAGDSEGVTRLTQAGLWLAWGMALIAALLLWNLEPILLQLGQ 119

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>NORM_LISMO (Q8Y654) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 456

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
 Frame = +1

Query: 205 WAQ-LQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS-WANVTGYAFVTGMS 378
           W Q L    P+V+T ++ + +       SG+  N  LAG  + +S WA V   A  +G+ 
Sbjct: 11  WKQFLTIFTPIVITQLTLFSMTFFDTTMSGNYSNQALAGVAIGSSFWAPVN--AAFSGLL 68

Query: 379 GALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLL 525
            A+  +  Q  GA+  + +   + + L ++  ++ ++ ++     P++L
Sbjct: 69  MAITPIIAQLIGAKKEKQVKNTVHNGLYIALFLAFILILINFLVVPMIL 117

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>NORM_LISMF (Q71YH0) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 456

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
 Frame = +1

Query: 205 WAQ-LQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS-WANVTGYAFVTGMS 378
           W Q L    P+V+T ++ + +       SG+  N  LAG  + +S WA V   A  +G+ 
Sbjct: 11  WKQFLTIFTPIVITQLTLFSMTFFDTTMSGNYSNQALAGVAIGSSFWAPVN--AAFSGLL 68

Query: 379 GALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLL 525
            A+  +  Q  GA+  + +   + + L ++  ++ ++ ++     P +L
Sbjct: 69  MAITPIIAQLIGAKKEKQVKNTVHNGLYIALFLAFILILINFLVVPTIL 117

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>NORM_LISIN (Q92AG2) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 456

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
 Frame = +1

Query: 205 WAQ-LQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS-WANVTGYAFVTGMS 378
           W Q L    P+V+T ++ + +       SG+  N  LAG  + +S WA V   A  +G+ 
Sbjct: 11  WKQFLTIFTPIVITQLTLFSMTFFDTTMSGNYSNQALAGVAIGSSFWAPVN--AAFSGLL 68

Query: 379 GALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLL 525
            A+  +  Q  GA+  + +   + + L ++  ++ ++ ++     P +L
Sbjct: 69  MAITPIIAQLIGAKKEKQVKNTVHNGLYIALFLAFILILINFLVVPTIL 117

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>NORM_BRUSU (Q8G2I1) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 471

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 4/148 (2%)
 Frame = +1

Query: 121 DGKGGEGEARPS-SCSPAWLRRLIDTEEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHL 297
           DG    G   P+ S +  W R ++        L+   P++ TN+S   +    V+F G L
Sbjct: 2   DGTFDAGFREPTISKANRWGREMV------VALKLGWPLIFTNLSQAALTATDVIFIGRL 55

Query: 298 GNVHLAGATLANSWANVTGYAFVTGMSGALETLCGQAYGARLYRMLGLYLQSSLIMSAVV 477
           G   LA A LA S+ + T   F  G+  A+  +   A G   + +  +         + +
Sbjct: 56  GADTLASALLATSFYH-TLMIFSMGLVSAVMPMIAIALGKNRHSVRDVRRTVRQGFWSAI 114

Query: 478 SMVI---AVLWLFTEPLLLCLHQEPEVS 552
            +VI    VLW   E + L L Q P+++
Sbjct: 115 MIVIPLWVVLW-HCEEIFLFLGQRPDIA 141

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>NORM_BRUME (Q8YFD7) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 471

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 4/148 (2%)
 Frame = +1

Query: 121 DGKGGEGEARPS-SCSPAWLRRLIDTEEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHL 297
           DG    G   P+ S +  W R ++        L+   P++ TN+S   +    V+F G L
Sbjct: 2   DGTFDAGFREPTISKANRWGREMV------VALKLGWPLIFTNLSQAALTATDVIFIGRL 55

Query: 298 GNVHLAGATLANSWANVTGYAFVTGMSGALETLCGQAYGARLYRMLGLYLQSSLIMSAVV 477
           G   LA A LA S+ + T   F  G+  A+  +   A G   + +  +         + +
Sbjct: 56  GADTLASALLATSFYH-TLMIFSMGLVSAVMPMIAIALGKNRHSVRDVRRTVRQGFWSAI 114

Query: 478 SMVI---AVLWLFTEPLLLCLHQEPEVS 552
            +VI    VLW   E + L L Q P+++
Sbjct: 115 MIVIPLWVVLW-HCEEIFLFLGQRPDIA 141

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>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 925

 Score = 37.0 bits (84), Expect = 0.038
 Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -3

Query: 384 GAAHTSHEGVAGDVGPGVGER---GAGEVDVAEVAGEHDGHQRDAVVGHVGEDHR 229
           G+ H  HEG  G +G G G R   G G        G H GH+   V GH G DHR
Sbjct: 811 GSGHRPHEGPGGGMGAGGGHRPHEGPGH------GGPH-GHRPHDVPGHRGHDHR 858

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>NORM_BACHK (Q6HLG9) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 453

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
 Frame = +1

Query: 217 QFAV---PMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS-WANVTGYAFVTGMSGA 384
           QFA+   P+ +T MS + +       SGH   + LAG  +  S W  V+    +TG+  A
Sbjct: 13  QFALLFFPIFVTQMSLFAMSFFDTTMSGHASPIDLAGVAIGTSIWIPVS--TGLTGILMA 70

Query: 385 LETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFT-EPLLLCLHQEPEV 549
              +  Q  G++    +   +  ++ ++   S V+ ++ LFT  P+L  +  E  V
Sbjct: 71  TTPIVAQLVGSKKKEDVPHVVIQAVYLAICASFVVILIGLFTVTPILNGMRLEEPV 126

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>NORM_BACCZ (Q63DZ4) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 453

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
 Frame = +1

Query: 217 QFAV---PMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS-WANVTGYAFVTGMSGA 384
           QFA+   P+ +T MS + +       SGH   + LAG  +  S W  V+    +TG+  A
Sbjct: 13  QFALLFFPIFVTQMSLFAMSFFDTTMSGHASPIDLAGVAIGTSIWIPVS--TGLTGILMA 70

Query: 385 LETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFT-EPLLLCLHQEPEV 549
              +  Q  G++    +   +  ++ ++   S V+ ++ LFT  P+L  +  E  V
Sbjct: 71  TTPIVAQLVGSKKKEDVPHVVIQAVYLAICASFVVILIGLFTVTPILNGMRLEEPV 126

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>NORM_BACAN (Q81T85) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 453

 Score = 36.2 bits (82), Expect = 0.064
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
 Frame = +1

Query: 229 PMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS-WANVTGYAFVTGMSGALETLCGQ 405
           P+ +T MS + +       SGH   + LAG  +  S W  V+    +TG+  A   +  Q
Sbjct: 20  PIFVTQMSLFAMSFFDTTMSGHASPIDLAGVAIGTSIWIPVS--TGLTGILMATTPIVAQ 77

Query: 406 AYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFT-EPLLLCLHQEPEV 549
             G++    +   +  ++ ++   S V+ ++ LFT  P+L  +  E  V
Sbjct: 78  LVGSKKKEDVPHVIIQAVYLAICASFVVILIGLFTVTPILNGMRLEEPV 126

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>PMPM_PSEAE (Q9I3Y3) Multidrug resistance protein pmpM (H(+)/drug antiporter)|
           (Multidrug-efflux transporter)
          Length = 477

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
 Frame = +1

Query: 214 LQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS-WANVTGYAFVTGMSGALE 390
           L  A P+++  ++   +  V  + +G      LA   L NS W  +  +  +TG   A  
Sbjct: 22  LTLAAPIMIAQLATTAMGFVDAVMAGRASPHDLAAVALGNSIW--IPMFLLMTGTLLATT 79

Query: 391 TLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVI-AVLWLFTEPLLLCLHQEPEV 549
               Q +GA      G  ++ +L ++ ++  +  AVLW  +EP+L  +   PE+
Sbjct: 80  AKVAQRHGAGDQPGTGPLVRQALWLALLIGPLSGAVLWWLSEPILGLMKVRPEL 133

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>DINF_ECOLI (P28303) DNA-damage-inducible protein F|
          Length = 459

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
 Frame = +1

Query: 223 AVPMVLTNMSYYGIPLVSVMFSGHLGN-VHLAGATLANSWANVTGYAFVTGMSGALET-- 393
           A+PM+ +N++   + LV     GHL + V+L G  +    A  T + F+  +   + T  
Sbjct: 33  ALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVG---ATATSFLFMLLLFLRMSTTG 89

Query: 394 LCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVL 498
           L  QAYGA+  + L   L   L+++     +IA+L
Sbjct: 90  LTAQAYGAKNPQALARTLVQPLLLALGAGALIALL 124



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 22/84 (26%), Positives = 42/84 (50%)
 Frame = +1

Query: 280 MFSGHLGNVHLAGATLANSWANVTGYAFVTGMSGALETLCGQAYGARLYRMLGLYLQSSL 459
           +    LG+  +A   +  +    T YA + G + A+E   GQAYGAR    L    +++ 
Sbjct: 275 VLGARLGSDIIAVNAVLMTLLTFTAYA-LDGFAYAVEAHSGQAYGARDGSQLLDVWRAAC 333

Query: 460 IMSAVVSMVIAVLWLFTEPLLLCL 531
             S +V+++ +V++L     ++ L
Sbjct: 334 RQSGIVALLFSVVYLLAGEHIIAL 357

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>NORM_PSEPK (Q88CB9) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 462

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
 Frame = +1

Query: 193 TEEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATL-ANSWANVTGYAFVT 369
           T E  A L+ A P++ + +++  + L   +    +    LAG  L A S++ V+   F  
Sbjct: 6   TTELKALLRLAGPLIASQLAHMLMVLTDTLMMARISPQALAGGGLGAASYSFVS--IFCL 63

Query: 370 GMSGALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLLCLHQEPE 546
           G+  A+ TL     GA          Q+ L ++  +++  A++    EP+LL   Q+PE
Sbjct: 64  GVIAAVGTLVAIRKGANDIEGATRLAQNGLWLAWALALFAALVLWNLEPVLLLFGQKPE 122

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>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 940

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -3

Query: 384 GAAHTSHEGVAGDVGPGVGER---GAGEVDVAEVAGEHDGHQRDAVVGHVGEDHR 229
           G  H  HEG  G +G   G R   G G        G H GH+   V GH G DHR
Sbjct: 826 GGGHRPHEGPGGSMGGSGGHRPHEGPGH------GGPH-GHRPHDVPGHRGHDHR 873

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>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
          Length = 940

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -3

Query: 384 GAAHTSHEGVAGDVGPGVGER---GAGEVDVAEVAGEHDGHQRDAVVGHVGEDHR 229
           G  H  HEG  G +G   G R   G G        G H GH+   V GH G DHR
Sbjct: 827 GGGHRPHEGPGGSMGGSGGHRPHEGPGH------GGPH-GHRPHDVPGHRGHDHR 874

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>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (MHC class
           I region proline-rich protein CAT53) (FB19 protein)
           (PP1-binding protein of 114 kDa) (p99)
          Length = 940

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -3

Query: 384 GAAHTSHEGVAGDVGPGVGER---GAGEVDVAEVAGEHDGHQRDAVVGHVGEDHR 229
           G  H  HEG  G +G   G R   G G        G H GH+   V GH G DHR
Sbjct: 826 GGGHRPHEGPGGSMGGSGGHRPHEGPGH------GGPH-GHRPHDVPGHRGHDHR 873

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>NORM_AZOSE (Q5NYX9) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 463

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
 Frame = +1

Query: 208 AQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANSWANVTGYAFVTGMSGAL 387
           A L+  +PM L+         +  +F+  LG   +AG  +  + A +  Y     +S A+
Sbjct: 247 ALLKLGIPMGLSTFIEVSSFTLIALFAARLGAEAVAGHRVVANLAALI-YMLPLAISIAI 305

Query: 388 ETLCGQAYGARLYRMLGLYLQSSLIMSA-VVSMVIAVLWLFTEPLLLCLHQEPEV 549
             L GQA GAR        ++  + ++  +V+++  +LW+  EP++     +P V
Sbjct: 306 LVLVGQAAGAREPARARATVRVGMGLTVGLVALIGVLLWVGREPVVALFSADPAV 360

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>PP1RA_MOUSE (Q80W00) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
          Length = 888

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -3

Query: 384 GAAHTSHEGVAGDVGPGVGER---GAGEVDVAEVAGEHDGHQRDAVVGHVGEDHR 229
           G+ H SH+G  G++G   G R   G G        G H GH+   V  H G DHR
Sbjct: 776 GSGHRSHDGPGGNMGGSGGHRSHEGPGH------GGPH-GHRPHDVPSHRGHDHR 823

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>NORM_GEOKA (Q5KZL2) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 455

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = +1

Query: 226 VPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS-WANVTGYAFVTGMSGALETLCG 402
           +P+ ++    Y +  V V  SGH     LAG  + +S W  V  +    G+  AL  +  
Sbjct: 19  LPIFVSQTGQYAMNFVDVAMSGHASAEDLAGVAIGSSLWVPV--FTGAGGILLALSPIVS 76

Query: 403 QAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLL 525
             +GA  +  +   +  +L ++  +++ I ++     P +L
Sbjct: 77  HHFGAGRHDSITRAVAQALYLAVALAVAIVLIGAAAVPFIL 117

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>NORM_BACC1 (Q73BB8) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 454

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = +1

Query: 229 PMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS-WANVTGYAFVTGMSGALETLCGQ 405
           P+ +T MS + +       SGH   + LAG  +  S W  V+    +TG+  A   +  Q
Sbjct: 20  PIFITQMSLFAMSFFDTTMSGHASPIDLAGVAIGTSIWIPVS--TGLTGILMATTPIVAQ 77

Query: 406 AYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLF-TEPLLLCLHQEPEV 549
             G++    +   +  ++ ++   S V+ ++  F   P+L  +  E  V
Sbjct: 78  LVGSKKKEDVPQVVIQAVYLAICASFVVMLIGFFAVTPILNGMRLEEPV 126

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>NUDH_RALEJ (Q46X20) Probable (di)nucleoside polyphosphate hydrolase (EC|
           3.6.1.-)
          Length = 231

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -1

Query: 446 RYSPSMRYSRAP*ACPHSVSRAPLIPVTKA*PVTLAQELASVAPARWTLPRWP 288
           R+    RY++ P   P    R PL PVT+  PV  A E      +   LP  P
Sbjct: 172 RHGSGQRYAQQPGQPPTLAQRRPLQPVTQVAPVAPAAEAVQAVESDAVLPATP 224

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>NORM_XANAC (Q8PG07) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 458

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
 Frame = +1

Query: 223 AVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS--WANVTGYAFVTGMSGALETL 396
           A+P+VL ++S   I  V  + +GH G   LA  T+  S  W  +       G   +L   
Sbjct: 25  ALPLVLGHVSTGLIGFVDNVIAGHHGTATLAAVTIGTSLLWLPM---LVPIGTLISLTAS 81

Query: 397 CGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLLCLHQEPEV 549
             Q  GA   R +G   + +L +S  +S ++ V      PLL      P++
Sbjct: 82  VSQLLGAGREREIGPLFRQALWLSLGLSALMFVFLSVVPPLLPTFGIAPDI 132

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>NORM_XYLFT (Q879Z5) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 469

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
 Frame = +1

Query: 214 LQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS--WANVTGYAFVTGMSGAL 387
           L  A+P+VL ++S   I  V  + +GH   V LA +T+  +  W  +       G   +L
Sbjct: 34  LLLALPLVLGHVSTGLIGFVLNVIAGHHSTVTLAASTIGTALLWLPM---LVPMGTLISL 90

Query: 388 ETLCGQAYGARLYRMLG--------LYLQSSLIMSAVVSMVIAVLWLF 507
             L  Q +GA   R +G        L +   L+M   +S+V A+L LF
Sbjct: 91  TVLVSQLHGAERERDIGPLFRQALWLAMLLGLVMFTFLSVVPALLPLF 138

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>NORM_XYLFA (Q9PA34) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 469

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
 Frame = +1

Query: 214 LQFAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANS--WANVTGYAFVTGMSGAL 387
           L  A+P+VL ++S   I  V  + +GH   V LA +T+  +  W  +       G   +L
Sbjct: 34  LLLALPLVLGHVSTGLIGFVLNVIAGHHSTVTLAASTIGTALLWLPM---LVPMGTLISL 90

Query: 388 ETLCGQAYGARLYRMLG--------LYLQSSLIMSAVVSMVIAVLWLF 507
             L  Q +GA   R +G        L +   L+M   +S+V A+L LF
Sbjct: 91  TVLVSQLHGAERERDIGPLFRQALWLAMLLGLVMFTFLSVVPALLPLF 138

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>HXD11_MOUSE (P23813) Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5)|
          Length = 323

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +1

Query: 67  GGAAGMSSAPLLGGPEP---ADGKGGEGEARP 153
           GG  G   A    GPEP   A+G GGEGE  P
Sbjct: 203 GGGGGSPCAKATPGPEPKGAAEGGGGEGEGPP 234

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>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (PNUTS
           protein) (MHC class I region proline-rich protein CAT53)
          Length = 872

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 18/71 (25%)
 Frame = -3

Query: 384 GAAHTSHEGVAGDVGPGV---------GERGAGEVDVAEVAG---------EHDGHQRDA 259
           G+ H SHEG  G +G G          G  G    DV    G         EH GH    
Sbjct: 762 GSGHRSHEGPGGSMGSGHRSHEGPGHGGPHGHRPHDVPSHRGHDHRGPPPHEHRGHDGHG 821

Query: 258 VVGHVGEDHRH 226
             GH G D  H
Sbjct: 822 GGGHRGHDGGH 832

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>ZN326_MOUSE (O88291) Zinc finger protein 326 (Zinc finger protein-associated|
           with nuclear matrix of 75 kDa)
          Length = 580

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 390 LQGAAHTSHEGVAGDVGPGVGE-RGAGEVDVAEVAGEHDGHQRDAVVGHVGEDHRHREL 217
           ++G   T+    AG+    VGE  GAGE + AE   E +G Q  A      E   HR++
Sbjct: 523 VEGEEGTAEAAAAGEAD-AVGEAEGAGEAEEAEEEEEEEGTQEFAAQACATEQCEHRQM 580

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>MDTB_PHOLL (Q7N3E2) Multidrug resistance protein mdtB (Multidrug transporter|
            mdtB)
          Length = 1048

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 364  VTGMSGALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLLCL 531
            +  + GAL  +     GA L R LG+ +   LIMS        +L LFT P++  L
Sbjct: 973  MAALLGALPLMLSTGVGAELRRPLGICMVGGLIMS-------QILTLFTTPVIYLL 1021

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>GANC_MACFA (Q9BE70) Neutral alpha-glucosidase C (EC 3.2.1.-) (Fragment)|
          Length = 769

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +1

Query: 367 TGMSGALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLLCLHQEPE 546
           TG   A        YG ++Y  +G+Y     +++  +   I + WL     L+ ++ EP 
Sbjct: 95  TGDEDAYRLYNLDVYGYQIYDKMGIYGSVPYLLAHKLGRTIGIFWLNASETLVEINTEPA 154

Query: 547 V 549
           V
Sbjct: 155 V 155

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>YEEO_ECOLI (P76352) Hypothetical protein yeeO|
          Length = 547

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = +1

Query: 205 WAQLQ-FAVPMVLTNMSYYGIPLVSVMFSGHLGNVHLAGATLANSWANVTGYAFVTGMSG 381
           W ++   AVP+ + N     + ++S      LG   +AG  LA+S+ N+   AF   +  
Sbjct: 91  WREITPLAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADSF-NMVIMAFFAAIDL 149

Query: 382 ALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVL 498
               +   + G R  R   +  + SL++  + ++++A L
Sbjct: 150 GTTVVVAFSLGKRDRRRARVATRQSLVIMTLFAVLLATL 188

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>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)|
           (Cut-like 2)
          Length = 1424

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +1

Query: 100 LGGPEPADGKGGEGEARPSS 159
           LGGPEPADG GG G A P +
Sbjct: 468 LGGPEPADG-GGGGAAGPGA 486

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>AGLU_SPIOL (O04893) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase)|
          Length = 903

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 190 DTEEAWAQLQFAVPMVLTNMSYYGIPLVSVMFSGHLGN 303
           D    W  L +++P +L +   +GIP+V     G LGN
Sbjct: 564 DNAATWNDLVYSIPSML-DFGLFGIPMVGADICGFLGN 600

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>GANC_HUMAN (Q8TET4) Neutral alpha-glucosidase C (EC 3.2.1.20)|
          Length = 914

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +1

Query: 367 TGMSGALETLCGQAYGARLYRMLGLYLQSSLIMSAVVSMVIAVLWLFTEPLLLCLHQEPE 546
           TG   A        YG ++Y  +G+Y     +++  +   I + WL     L+ ++ EP 
Sbjct: 240 TGDGDAYRLYNLDVYGYQIYDKMGIYGSVPYLLAHKLGRTIGIFWLNASETLVEINTEPA 299

Query: 547 V 549
           V
Sbjct: 300 V 300


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,603,742
Number of Sequences: 219361
Number of extensions: 859198
Number of successful extensions: 4117
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4105
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result