ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart45c01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469706.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1731 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Plus Query: 386 cgacctggcgtcggggctcgcggccgtggcggcggctttggaccggcgcgtggccggcgt 445 ||||||| |||||||||| ||| ||||||||| || |||| ||||||| ||||| ||| Sbjct: 1094 cgacctgtcgtcggggctggcgagcgtggcggccgcggtggagcggcgcgcggccgccgt 1153 Query: 446 gcccgaggaggatctgtgggccgccgtggagtggctgcacgcgcggcaggccgaaggcgg 505 ||| |||||||| |||||| ||||| | |||||||||||| |||| ||||||| ||||| Sbjct: 1154 gccggaggaggagctgtggcccgccatcgagtggctgcacacgcgccaggccgccggcgg 1213 Query: 506 agagcccttccagatgtacgggccggagttcacctgcatggcgctggatcacgt 559 ||||| ||||||||||||||||||||| | || ||||||||||| || ||||| Sbjct: 1214 cgagccgttccagatgtacgggccggagctgacgtgcatggcgctcgaccacgt 1267 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 282 gaggagagggagctcacgctcgcgctcgacttccgcaagaagatgcacgcgccgctgccg 341 |||||||||||||| ||||||||||| |||||||| ||| |||||| |||||||||||| Sbjct: 990 gaggagagggagctgacgctcgcgctggacttccggaagcggatgcaggcgccgctgccg 1049 Query: 342 accgggtactacggca 357 || ||||||||||||| Sbjct: 1050 acggggtactacggca 1065 Score = 95.6 bits (48), Expect = 1e-16 Identities = 105/124 (84%) Strand = Plus / Plus Query: 156 atgtcatccgcaacgttccacttccccgccgacgcgatgcgcgcgctggtgtcctccctc 215 ||||||||||| ||||||| |||| ||| | |||||||||||||||| ||||| || || Sbjct: 834 atgtcatccgccacgttccgcttcagcgcagccgcgatgcgcgcgctgctgtccgccgtc 893 Query: 216 gagcccgagacgacccccttcgcggcgcttgccgcgctcttctggctgcgcatcgcgggc 275 ||||| | || ||||| ||||| ||||| ||||||||||||||||| ||| |||||| | Sbjct: 894 gagccgggcaccaccccgttcgccgcgctggccgcgctcttctggctccgcgtcgcggcc 953 Query: 276 gccg 279 |||| Sbjct: 954 gccg 957 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 112 tggcgacggggccgggcagccgcgtgacgcggtacgcc 149 ||||||||||||| |||||||||||||||||||||||| Sbjct: 121 tggcgacggggccaggcagccgcgtgacgcggtacgcc 158
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 386 cgacctggcgtcggggctcgcggccgtggcggcggctttggaccggcgcgtggccggcgt 445 ||||||| |||||||||| ||| ||||||||| || |||| ||||||| ||||| ||| Sbjct: 30322146 cgacctgtcgtcggggctggcgagcgtggcggccgcggtggagcggcgcgcggccgccgt 30322087 Query: 446 gcccgaggaggatctgtgggccgccgtggagtggctgcacgcgcggcaggccgaaggcgg 505 ||| |||||||| |||||| ||||| | |||||||||||| |||| ||||||| ||||| Sbjct: 30322086 gccggaggaggagctgtggcccgccatcgagtggctgcacacgcgccaggccgccggcgg 30322027 Query: 506 agagcccttccagatgtacgggccggagttcacctgcatggcgctggatcacgt 559 ||||| ||||||||||||||||||||| | || ||||||||||| || ||||| Sbjct: 30322026 cgagccgttccagatgtacgggccggagctgacgtgcatggcgctcgaccacgt 30321973 Score = 95.6 bits (48), Expect = 1e-16 Identities = 105/124 (84%) Strand = Plus / Minus Query: 156 atgtcatccgcaacgttccacttccccgccgacgcgatgcgcgcgctggtgtcctccctc 215 ||||||||||| ||||||| |||| ||| | |||||||||||||||| ||||| || || Sbjct: 30322406 atgtcatccgccacgttccgcttcagcgcagccgcgatgcgcgcgctgctgtccgccgtc 30322347 Query: 216 gagcccgagacgacccccttcgcggcgcttgccgcgctcttctggctgcgcatcgcgggc 275 ||||| | || ||||| ||||| ||||| ||||||||||||||||| ||| |||||| | Sbjct: 30322346 gagccgggcaccaccccgttcgccgcgctggccgcgctcttctggctccgcgtcgcggcc 30322287 Query: 276 gccg 279 |||| Sbjct: 30322286 gccg 30322283 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 282 gaggagagggagctcacgctcgcgctcgacttccgcaagaagatgcacgcgccgctgccg 341 |||||||||||||| ||||||||||| |||||||| ||| |||||| |||||||||||| Sbjct: 30322250 gaggagagggagctgacgctcgcgctggacttccggaagcggatgcaggcgccgctgccg 30322191 Query: 342 accgggtactacggca 357 || ||||||||||||| Sbjct: 30322190 acggggtactacggca 30322175 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 112 tggcgacggggccgggcagccgcgtgacgcggtacgcc 149 ||||||||||||| |||||||||||||||||||||||| Sbjct: 30323575 tggcgacggggccaggcagccgcgtgacgcggtacgcc 30323538
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 386 cgacctggcgtcggggctcgcggccgtggcggcggctttggaccggcgcgtggccggcgt 445 ||||||| |||||||||| ||| ||||||||| || |||| ||||||| ||||| ||| Sbjct: 113826 cgacctgtcgtcggggctggcgagcgtggcggccgcggtggagcggcgcgcggccgccgt 113767 Query: 446 gcccgaggaggatctgtgggccgccgtggagtggctgcacgcgcggcaggccgaaggcgg 505 ||| |||||||| |||||| ||||| | |||||||||||| |||| ||||||| ||||| Sbjct: 113766 gccggaggaggagctgtggcccgccatcgagtggctgcacacgcgccaggccgccggcgg 113707 Query: 506 agagcccttccagatgtacgggccggagttcacctgcatggcgctggatcacgt 559 ||||| ||||||||||||||||||||| | || ||||||||||| || ||||| Sbjct: 113706 cgagccgttccagatgtacgggccggagctgacgtgcatggcgctcgaccacgt 113653 Score = 95.6 bits (48), Expect = 1e-16 Identities = 105/124 (84%) Strand = Plus / Minus Query: 156 atgtcatccgcaacgttccacttccccgccgacgcgatgcgcgcgctggtgtcctccctc 215 ||||||||||| ||||||| |||| ||| | |||||||||||||||| ||||| || || Sbjct: 114086 atgtcatccgccacgttccgcttcagcgcagccgcgatgcgcgcgctgctgtccgccgtc 114027 Query: 216 gagcccgagacgacccccttcgcggcgcttgccgcgctcttctggctgcgcatcgcgggc 275 ||||| | || ||||| ||||| ||||| ||||||||||||||||| ||| |||||| | Sbjct: 114026 gagccgggcaccaccccgttcgccgcgctggccgcgctcttctggctccgcgtcgcggcc 113967 Query: 276 gccg 279 |||| Sbjct: 113966 gccg 113963 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 282 gaggagagggagctcacgctcgcgctcgacttccgcaagaagatgcacgcgccgctgccg 341 |||||||||||||| ||||||||||| |||||||| ||| |||||| |||||||||||| Sbjct: 113930 gaggagagggagctgacgctcgcgctggacttccggaagcggatgcaggcgccgctgccg 113871 Query: 342 accgggtactacggca 357 || ||||||||||||| Sbjct: 113870 acggggtactacggca 113855 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 112 tggcgacggggccgggcagccgcgtgacgcggtacgcc 149 ||||||||||||| |||||||||||||||||||||||| Sbjct: 115255 tggcgacggggccaggcagccgcgtgacgcggtacgcc 115218
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Minus Query: 386 cgacctggcgtcggggctcgcggccgtggcggcggctttggaccggcgcgtggccggcgt 445 ||||||| |||||||||| ||| ||||||||| || |||| ||||||| ||||| ||| Sbjct: 30413568 cgacctgtcgtcggggctggcgagcgtggcggccgcggtggagcggcgcgcggccgccgt 30413509 Query: 446 gcccgaggaggatctgtgggccgccgtggagtggctgcacgcgcggcaggccgaaggcgg 505 ||| |||||||| |||||| ||||| | |||||||||||| |||| ||||||| ||||| Sbjct: 30413508 gccggaggaggagctgtggcccgccatcgagtggctgcacacgcgccaggccgccggcgg 30413449 Query: 506 agagcccttccagatgtacgggccggagttcacctgcatggcgctggatcacgt 559 ||||| ||||||||||||||||||||| | || ||||||||||| || ||||| Sbjct: 30413448 cgagccgttccagatgtacgggccggagctgacgtgcatggcgctcgaccacgt 30413395 Score = 95.6 bits (48), Expect = 1e-16 Identities = 105/124 (84%) Strand = Plus / Minus Query: 156 atgtcatccgcaacgttccacttccccgccgacgcgatgcgcgcgctggtgtcctccctc 215 ||||||||||| ||||||| |||| ||| | |||||||||||||||| ||||| || || Sbjct: 30413828 atgtcatccgccacgttccgcttcagcgcagccgcgatgcgcgcgctgctgtccgccgtc 30413769 Query: 216 gagcccgagacgacccccttcgcggcgcttgccgcgctcttctggctgcgcatcgcgggc 275 ||||| | || ||||| ||||| ||||| ||||||||||||||||| ||| |||||| | Sbjct: 30413768 gagccgggcaccaccccgttcgccgcgctggccgcgctcttctggctccgcgtcgcggcc 30413709 Query: 276 gccg 279 |||| Sbjct: 30413708 gccg 30413705 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 282 gaggagagggagctcacgctcgcgctcgacttccgcaagaagatgcacgcgccgctgccg 341 |||||||||||||| ||||||||||| |||||||| ||| |||||| |||||||||||| Sbjct: 30413672 gaggagagggagctgacgctcgcgctggacttccggaagcggatgcaggcgccgctgccg 30413613 Query: 342 accgggtactacggca 357 || ||||||||||||| Sbjct: 30413612 acggggtactacggca 30413597 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 112 tggcgacggggccgggcagccgcgtgacgcggtacgcc 149 ||||||||||||| |||||||||||||||||||||||| Sbjct: 30414997 tggcgacggggccaggcagccgcgtgacgcggtacgcc 30414960
>gb|DQ377805.1|DQ377804S2 Squirrelpox virus 1296/99, partial genome Length = 37108 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 389 cctggcgtcggggctcgcggccg 411 ||||||||||||||||||||||| Sbjct: 9759 cctggcgtcggggctcgcggccg 9737
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 389 cctggcgtcggggctcgcggccgtggc 415 |||||||||||| |||||||||||||| Sbjct: 3464412 cctggcgtcgggcctcgcggccgtggc 3464386
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 467 cgccgtggagtggctgcacgcgc 489 ||||||||||||||||||||||| Sbjct: 11756831 cgccgtggagtggctgcacgcgc 11756853
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711F01 Length = 193091 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 467 cgccgtggagtggctgcacgcgc 489 ||||||||||||||||||||||| Sbjct: 191465 cgccgtggagtggctgcacgcgc 191487
>dbj|AK120689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169E21, full insert sequence Length = 2172 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 467 cgccgtggagtggctgcacgcgc 489 ||||||||||||||||||||||| Sbjct: 418 cgccgtggagtggctgcacgcgc 440
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 446 gcccgaggaggatctgtgggccgccg 471 |||||||| ||||||||||||||||| Sbjct: 3564810 gcccgaggcggatctgtgggccgccg 3564785 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 259 ggctgcgcatcgcgggcgccga 280 |||||||||||||||||||||| Sbjct: 36254 ggctgcgcatcgcgggcgccga 36233 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 272 gggcgccgaggaggagagggagctc 296 |||||||||||||| |||||||||| Sbjct: 1602752 gggcgccgaggaggcgagggagctc 1602776
>ref|XM_550140.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2555 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 gctcgcggccgtggcggcggc 421 ||||||||||||||||||||| Sbjct: 437 gctcgcggccgtggcggcggc 417
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 cgccgacgcgatgcgcgcgctggtg 206 ||||||||| ||||||||||||||| Sbjct: 4376672 cgccgacgccatgcgcgcgctggtg 4376648 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gacgcgatgcgcgcgctggt 205 |||||||||||||||||||| Sbjct: 5097589 gacgcgatgcgcgcgctggt 5097608
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 189 gcgatgcgcgcgctggtgtcctccctcga 217 ||||||||||||| | ||||||||||||| Sbjct: 163780 gcgatgcgcgcgcggctgtcctccctcga 163752
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 399 gggctcgcggccgtggcggcggctttgga 427 ||||||||||||||||| || |||||||| Sbjct: 128154 gggctcgcggccgtggcagctgctttgga 128126
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 gggagctcacgctcgcgctcg 309 ||||||||||||||||||||| Sbjct: 49685 gggagctcacgctcgcgctcg 49665
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 tggctgcacgcgcggcaggcc 497 ||||||||||||||||||||| Sbjct: 23035362 tggctgcacgcgcggcaggcc 23035382
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 gggagctcacgctcgcgctcg 309 ||||||||||||||||||||| Sbjct: 40250733 gggagctcacgctcgcgctcg 40250713 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 gggagctcacgctcgcgctcg 309 ||||||||||||||||||||| Sbjct: 11092779 gggagctcacgctcgcgctcg 11092799 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 gctcgcggccgtggcggcggc 421 ||||||||||||||||||||| Sbjct: 2582140 gctcgcggccgtggcggcggc 2582160
>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0682B08 Length = 138376 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 gggagctcacgctcgcgctcg 309 ||||||||||||||||||||| Sbjct: 121661 gggagctcacgctcgcgctcg 121681
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 gggagctcacgctcgcgctcg 309 ||||||||||||||||||||| Sbjct: 116511 gggagctcacgctcgcgctcg 116491
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 gctcgcggccgtggcggcggc 421 ||||||||||||||||||||| Sbjct: 136561 gctcgcggccgtggcggcggc 136581
>ref|XM_213328.2| PREDICTED: Rattus norvegicus hypothetical LOC287388 (predicted) (LOC287388), mRNA Length = 783 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 cgcgcggcaggccgaaggcgg 505 ||||||||||||||||||||| Sbjct: 52 cgcgcggcaggccgaaggcgg 32
>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_D09 Length = 138615 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 tggctgcacgcgcggcaggcc 497 ||||||||||||||||||||| Sbjct: 2400 tggctgcacgcgcggcaggcc 2420
>dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1067_B01 Length = 100525 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 tggctgcacgcgcggcaggcc 497 ||||||||||||||||||||| Sbjct: 59759 tggctgcacgcgcggcaggcc 59779
>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0434B04 Length = 167029 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 gctcgcggccgtggcggcggc 421 ||||||||||||||||||||| Sbjct: 31915 gctcgcggccgtggcggcggc 31935
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1425D05, complete sequence Length = 66450 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 gggagctcacgctcgcgctcg 309 ||||||||||||||||||||| Sbjct: 42083 gggagctcacgctcgcgctcg 42063
>dbj|AK066686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070L04, full insert sequence Length = 2555 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 gctcgcggccgtggcggcggc 421 ||||||||||||||||||||| Sbjct: 437 gctcgcggccgtggcggcggc 417
>gb|AC160121.2| Mus musculus BAC clone RP23-402P14 from chromosome 13, complete sequence Length = 183152 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cccctctccttccctctgca 62 |||||||||||||||||||| Sbjct: 179666 cccctctccttccctctgca 179685
>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence Length = 355714 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cccccctctccttccctctgcacg 64 ||||||||||| |||||||||||| Sbjct: 253844 cccccctctccctccctctgcacg 253821
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 ggcgtgcccgaggaggatct 460 |||||||||||||||||||| Sbjct: 2691405 ggcgtgcccgaggaggatct 2691424
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cccgccgacgcgatgcgcgc 199 |||||||||||||||||||| Sbjct: 852463 cccgccgacgcgatgcgcgc 852444 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tcgcggcgcttgccgcgctc 254 |||||||||||||||||||| Sbjct: 237178 tcgcggcgcttgccgcgctc 237159
>gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, complete sequence Length = 203276 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ggcgacggggccgggcagcc 132 |||||||||||||||||||| Sbjct: 7875 ggcgacggggccgggcagcc 7894
>ref|XM_955404.1| Neurospora crassa OR74A hypothetical protein (NCU05535.1) partial mRNA Length = 927 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 cgcatcgcgggcgccgagga 283 |||||||||||||||||||| Sbjct: 126 cgcatcgcgggcgccgagga 107
>ref|XM_325389.1| Neurospora crassa OR74A hypothetical protein (NCU05535.1) partial mRNA Length = 927 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 cgcatcgcgggcgccgagga 283 |||||||||||||||||||| Sbjct: 126 cgcatcgcgggcgccgagga 107
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgccgacgcgatgcgcgcgc 201 |||||||||||||||||||| Sbjct: 1685745 cgccgacgcgatgcgcgcgc 1685764
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cccgccgacgcgatgcgcgc 199 |||||||||||||||||||| Sbjct: 1868907 cccgccgacgcgatgcgcgc 1868888 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tcgcggcgcttgccgcgctc 254 |||||||||||||||||||| Sbjct: 919472 tcgcggcgcttgccgcgctc 919453
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940128D9, complete sequence Length = 128585 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 ccggcgcgtggccggcgtgc 447 |||||||||||||||||||| Sbjct: 46580 ccggcgcgtggccggcgtgc 46561
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cttctggctgcgcatcgcgg 273 |||||||||||||||||||| Sbjct: 1966598 cttctggctgcgcatcgcgg 1966617
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 cgcggccgtggcggcggctt 423 |||||||||||||||||||| Sbjct: 2993737 cgcggccgtggcggcggctt 2993718
>gb|AC102368.6| Mus musculus chromosome 14, clone RP23-220D8, complete sequence Length = 208781 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ggcgacggggccgggcagcc 132 |||||||||||||||||||| Sbjct: 170703 ggcgacggggccgggcagcc 170722
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgccgacgcgatgcgcgcgc 201 |||||||||||||||||||| Sbjct: 3020707 cgccgacgcgatgcgcgcgc 3020726
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cccgccgacgcgatgcgcgc 199 |||||||||||||||||||| Sbjct: 2496016 cccgccgacgcgatgcgcgc 2496035 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tcgcggcgcttgccgcgctc 254 |||||||||||||||||||| Sbjct: 761870 tcgcggcgcttgccgcgctc 761851
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgccgacgcgatgcgcgcgc 201 |||||||||||||||||||| Sbjct: 64723 cgccgacgcgatgcgcgcgc 64742
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 390 ctggcgtcggggctcgcggccgtggcgg 417 |||||||| ||||||||||| ||||||| Sbjct: 24006 ctggcgtccgggctcgcggcggtggcgg 24033
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 aggccgaaggcggagagccc 512 |||||||||||||||||||| Sbjct: 40131 aggccgaaggcggagagccc 40150
>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30, complete sequence Length = 141128 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gcgccgaggaggagagggag 293 |||||||||||||||||||| Sbjct: 94360 gcgccgaggaggagagggag 94341
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 tggccggcgtgcccgaggag 455 |||||||||||||||||||| Sbjct: 2895740 tggccggcgtgcccgaggag 2895759
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgccgacgcgatgcgcgcgc 201 |||||||||||||||||||| Sbjct: 2169522 cgccgacgcgatgcgcgcgc 2169541
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gcgccgaggaggagagggag 293 |||||||||||||||||||| Sbjct: 24377949 gcgccgaggaggagagggag 24377930
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 gcggcaggccgaaggcggag 507 |||||||||||||||||||| Sbjct: 952828 gcggcaggccgaaggcggag 952847
>gb|AY999716.1| Pseudomonas syringae pv. tabaci ATP-dependent protease gene, complete cds Length = 2397 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cttctggctgcgcatcgcgg 273 |||||||||||||||||||| Sbjct: 2152 cttctggctgcgcatcgcgg 2171
>gb|AY972055.1| Gordonia alkanivorans strain CC-JG39 DNA gyrase subunit B (gyrB) gene, partial cds Length = 1239 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 cggcgatcccaacggcgacg 107 |||||||||||||||||||| Sbjct: 328 cggcgatcccaacggcgacg 347
>gb|AY972054.1| Gordonia alkanivorans strain DSM 44499 DNA gyrase subunit B (gyrB) gene, partial cds Length = 1229 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 cggcgatcccaacggcgacg 107 |||||||||||||||||||| Sbjct: 318 cggcgatcccaacggcgacg 337
>dbj|AP003017.1| Mesorhizobium loti MAFF303099 plasmid pMLb DNA, complete genome Length = 208315 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 cgcttgccgcgctcttctgg 260 |||||||||||||||||||| Sbjct: 76631 cgcttgccgcgctcttctgg 76612
>dbj|AK104248.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F10, full insert sequence Length = 1010 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gcgccgaggaggagagggag 293 |||||||||||||||||||| Sbjct: 22 gcgccgaggaggagagggag 3
>dbj|AK073488.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040L19, full insert sequence Length = 1083 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gcgccgaggaggagagggag 293 |||||||||||||||||||| Sbjct: 48 gcgccgaggaggagagggag 29
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgccgacgcgatgcgcgcgc 201 |||||||||||||||||||| Sbjct: 2029939 cgccgacgcgatgcgcgcgc 2029920
>dbj|AB075555.1| Gordonia alkanivorans gyrB gene for DNA gyrase subunit B, partial cds Length = 1272 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 cggcgatcccaacggcgacg 107 |||||||||||||||||||| Sbjct: 330 cggcgatcccaacggcgacg 349
>dbj|AB075553.1| Gordonia alkanivorans gyrB gene for DNA gyrase subunit B, partial cds Length = 1272 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 cggcgatcccaacggcgacg 107 |||||||||||||||||||| Sbjct: 330 cggcgatcccaacggcgacg 349
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gaaccagactgcgcccccgg 25 |||||||||||||||||||| Sbjct: 2051389 gaaccagactgcgcccccgg 2051370 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,239,450 Number of Sequences: 3902068 Number of extensions: 3239450 Number of successful extensions: 82605 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78276 Number of HSP's gapped (non-prelim): 4329 length of query: 559 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 536 effective length of database: 17,143,297,704 effective search space: 9188807569344 effective search space used: 9188807569344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
