ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart45b12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024B20, full insert sequence Length = 1615 Score = 75.8 bits (38), Expect = 1e-10 Identities = 113/138 (81%) Strand = Plus / Plus Query: 438 tatgcatttcatgggcatacagatgaggtctttgctgctgcatgcagtcctgcagatgca 497 |||||||||| || |||||||| ||| | || |||| |||||||||||| |||||||| Sbjct: 335 tatgcatttcgtgctcatacagacgagatattcgctgtggcatgcagtcctacagatgca 394 Query: 498 tcacttgttgtttcgggaggtaaagatgacagagggtttctttggaggattggggcagca 557 |||||||| | ||| ||||| ||||| || ||||| || || |||| |||||| ||||| Sbjct: 395 tcacttgtggcttctggagggaaagacgatagaggattcctgtggaagattggatcagca 454 Query: 558 caggatgttcaggagctg 575 |||||||| ||||||| Sbjct: 455 gaggatgttttggagctg 472 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 288 gaaggctctgacggcgaggaggtcttcattgacgagcaggacatcatccaggagatacat 347 ||||||||||| || |||||||| ||||| | ||| |||||||||| || ||||||| Sbjct: 194 gaaggctctgatggagaggaggtgttcatcaatgaggaggacatcatacacgagataccc 253 Query: 348 cttgatgaggaagatctccctgacc 372 | || ||||||||||||||||||| Sbjct: 254 atcgacgaggaagatctccctgacc 278
>ref|XM_469337.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1086 Score = 69.9 bits (35), Expect = 9e-09 Identities = 83/99 (83%) Strand = Plus / Plus Query: 477 gcatgcagtcctgcagatgcatcacttgttgtttcgggaggtaaagatgacagagggttt 536 |||||||||||| |||||||||||||||| | ||| ||||| ||||| || ||||| || Sbjct: 112 gcatgcagtcctacagatgcatcacttgtggcttctggagggaaagacgatagaggattc 171 Query: 537 ctttggaggattggggcagcacaggatgttcaggagctg 575 || |||| |||||| ||||| |||||||| ||||||| Sbjct: 172 ctgtggaagattggatcagcagaggatgttttggagctg 210
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete sequence Length = 121849 Score = 69.9 bits (35), Expect = 9e-09 Identities = 83/99 (83%) Strand = Plus / Plus Query: 477 gcatgcagtcctgcagatgcatcacttgttgtttcgggaggtaaagatgacagagggttt 536 |||||||||||| |||||||||||||||| | ||| ||||| ||||| || ||||| || Sbjct: 120502 gcatgcagtcctacagatgcatcacttgtggcttctggagggaaagacgatagaggattc 120561 Query: 537 ctttggaggattggggcagcacaggatgttcaggagctg 575 || |||| |||||| ||||| |||||||| ||||||| Sbjct: 120562 ctgtggaagattggatcagcagaggatgttttggagctg 120600 Score = 44.1 bits (22), Expect = 0.50 Identities = 49/58 (84%) Strand = Plus / Plus Query: 288 gaaggctctgacggcgaggaggtcttcattgacgagcaggacatcatccaggagatac 345 ||||||||||| || |||||||| ||||| | ||| |||||||||| || ||||||| Sbjct: 119227 gaaggctctgatggagaggaggtgttcatcaatgaggaggacatcatacacgagatac 119284
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 9e-09 Identities = 83/99 (83%) Strand = Plus / Minus Query: 477 gcatgcagtcctgcagatgcatcacttgttgtttcgggaggtaaagatgacagagggttt 536 |||||||||||| |||||||||||||||| | ||| ||||| ||||| || ||||| || Sbjct: 27058389 gcatgcagtcctacagatgcatcacttgtggcttctggagggaaagacgatagaggattc 27058330 Query: 537 ctttggaggattggggcagcacaggatgttcaggagctg 575 || |||| |||||| ||||| |||||||| ||||||| Sbjct: 27058329 ctgtggaagattggatcagcagaggatgttttggagctg 27058291 Score = 44.1 bits (22), Expect = 0.50 Identities = 49/58 (84%) Strand = Plus / Minus Query: 288 gaaggctctgacggcgaggaggtcttcattgacgagcaggacatcatccaggagatac 345 ||||||||||| || |||||||| ||||| | ||| |||||||||| || ||||||| Sbjct: 27059664 gaaggctctgatggagaggaggtgttcatcaatgaggaggacatcatacacgagatac 27059607
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 9e-09 Identities = 83/99 (83%) Strand = Plus / Minus Query: 477 gcatgcagtcctgcagatgcatcacttgttgtttcgggaggtaaagatgacagagggttt 536 |||||||||||| |||||||||||||||| | ||| ||||| ||||| || ||||| || Sbjct: 27149712 gcatgcagtcctacagatgcatcacttgtggcttctggagggaaagacgatagaggattc 27149653 Query: 537 ctttggaggattggggcagcacaggatgttcaggagctg 575 || |||| |||||| ||||| |||||||| ||||||| Sbjct: 27149652 ctgtggaagattggatcagcagaggatgttttggagctg 27149614 Score = 44.1 bits (22), Expect = 0.50 Identities = 49/58 (84%) Strand = Plus / Minus Query: 288 gaaggctctgacggcgaggaggtcttcattgacgagcaggacatcatccaggagatac 345 ||||||||||| || |||||||| ||||| | ||| |||||||||| || ||||||| Sbjct: 27150987 gaaggctctgatggagaggaggtgttcatcaatgaggaggacatcatacacgagatac 27150930
>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete sequence Length = 111882 Score = 69.9 bits (35), Expect = 9e-09 Identities = 83/99 (83%) Strand = Plus / Plus Query: 477 gcatgcagtcctgcagatgcatcacttgttgtttcgggaggtaaagatgacagagggttt 536 |||||||||||| |||||||||||||||| | ||| ||||| ||||| || ||||| || Sbjct: 1010 gcatgcagtcctacagatgcatcacttgtggcttctggagggaaagacgatagaggattc 1069 Query: 537 ctttggaggattggggcagcacaggatgttcaggagctg 575 || |||| |||||| ||||| |||||||| ||||||| Sbjct: 1070 ctgtggaagattggatcagcagaggatgttttggagctg 1108
>gb|AY105394.1| Zea mays PCO069801 mRNA sequence Length = 1802 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 480 tgcagtcctgcagatgcatcacttgttgtttcgggaggtaaagatgacagagggtttctt 539 ||||||||| ||||| |||||||||| | ||| ||||| |||||||| || || ||||| Sbjct: 584 tgcagtcctacagattcatcacttgtggcttctggaggcaaagatgataggggatttctg 643 Query: 540 tggaggattgg 550 ||||||||||| Sbjct: 644 tggaggattgg 654 Score = 58.0 bits (29), Expect = 3e-05 Identities = 79/95 (83%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 253 cggcggccatgagtatctcaggtgaggtccccgaagaaggctctgacggcgaggagg--- 309 ||||||| ||||||||||||| ||| | |||| ||||| |||||||| ||||||| Sbjct: 354 cggcggcgatgagtatctcagaagagcttcccggcgaaggatctgacggtgaggaggagg 413 Query: 310 tcttcattgacgagcaggacatcatccaggagata 344 ||||||| ||||| ||||||||||||| |||||| Sbjct: 414 tcttcatcaacgaggaggacatcatccacgagata 448
>ref|XM_794863.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC577432 (LOC577432), mRNA Length = 1671 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Plus Query: 370 accaagacgatgccgacgatgatgacga 397 |||||||||| ||||||||||||||||| Sbjct: 806 accaagacgaagccgacgatgatgacga 833
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome Length = 2414465 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Minus Query: 368 tgaccaagacgatgccgacgatgatgacga 397 |||| ||||||||| ||||||||||||||| Sbjct: 1891449 tgacgaagacgatgacgacgatgatgacga 1891420
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 44.1 bits (22), Expect = 0.50 Identities = 31/34 (91%) Strand = Plus / Minus Query: 373 aagacgatgccgacgatgatgacgaagaagacca 406 |||| ||||||||||||| |||||| |||||||| Sbjct: 232552 aagatgatgccgacgatggtgacgaggaagacca 232519
>emb|AL031747.9|PFMAL1P4 Plasmodium falciparum DNA from MAL1P4, complete sequence Length = 66442 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 375 gacgatgccgacgatgatgacgaagaagac 404 ||||||| ||||||||||||||||||||| Sbjct: 32142 gacgatgatgacgatgatgacgaagaagac 32171
>gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, complete sequence Length = 126582 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 483 agtcctgcagatgcatcacttg 504 |||||||||||||||||||||| Sbjct: 23632 agtcctgcagatgcatcacttg 23611
>dbj|AP006687.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT41F23, TM0382, complete sequence Length = 99748 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 531 gggtttctttggaggattgggg 552 |||||||||||||||||||||| Sbjct: 54267 gggtttctttggaggattgggg 54246
>ref|XM_467149.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2349 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 cgacgatgatgacgaagaaga 403 ||||||||||||||||||||| Sbjct: 773 cgacgatgatgacgaagaaga 753
>ref|XM_360724.1| Magnaporthe grisea 70-15 hypothetical protein (MG03267.4) partial mRNA Length = 948 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 374 agacgatgccgacgatgatgacgaagaag 402 |||||||| ||||||||||||||| |||| Sbjct: 870 agacgatgacgacgatgatgacgatgaag 898
>ref|XM_744234.1| Aspergillus fumigatus Af293 glutaminyl-tRNA synthetase (Afu2g01920) partial mRNA Length = 1995 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 cccgaagaaggctctgacggc 302 ||||||||||||||||||||| Sbjct: 1591 cccgaagaaggctctgacggc 1611
>ref|XM_804406.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507969.54) partial mRNA Length = 2217 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 375 gacgatgccgacgatgatgacgaagaaga 403 ||||||| |||||||||||| |||||||| Sbjct: 1186 gacgatggcgacgatgatgaagaagaaga 1214
>ref|XM_546660.2| PREDICTED: Canis familiaris similar to retinoic acid induced 1 (LOC489541), mRNA Length = 5854 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 101 tcgtccagccaccggtgagccttgg 125 |||||||||||||||| |||||||| Sbjct: 2495 tcgtccagccaccggtcagccttgg 2471
>gb|AC116033.3| Zea mays genomic clone ZM15C05 sequence, complete sequence Length = 99606 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gcagaccgcccgccgccgccg 29 ||||||||||||||||||||| Sbjct: 44144 gcagaccgcccgccgccgccg 44164
>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence Length = 138186 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gcagaccgcccgccgccgccg 29 ||||||||||||||||||||| Sbjct: 34877 gcagaccgcccgccgccgccg 34897
>gb|AE014824.1| Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence Length = 250022 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 375 gacgatgccgacgatgatgacgaagaaga 403 ||||||| ||| ||||||||||||||||| Sbjct: 56683 gacgatgacgatgatgatgacgaagaaga 56655 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gacgatgatgacgaagaaga 403 |||||||||||||||||||| Sbjct: 56779 gacgatgatgacgaagaaga 56760
>gb|AC165171.2| Zea mays clone CH201-145P10, complete sequence Length = 233369 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 gcagaccgcccgccgccgccg 29 ||||||||||||||||||||| Sbjct: 191003 gcagaccgcccgccgccgccg 190983
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 ccgccgccgccgcttaccctc 38 ||||||||||||||||||||| Sbjct: 126254 ccgccgccgccgcttaccctc 126274
>emb|BX537292.5| Zebrafish DNA sequence from clone CH211-213E17 in linkage group 10, complete sequence Length = 189446 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 384 gacgatgatgacgaagaagaccaag 408 ||||| ||||||||||||||||||| Sbjct: 109154 gacgaagatgacgaagaagaccaag 109130
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 ccgccgccgccgcttaccctc 38 ||||||||||||||||||||| Sbjct: 20724802 ccgccgccgccgcttaccctc 20724822
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 cgacgatgatgacgaagaaga 403 ||||||||||||||||||||| Sbjct: 26688061 cgacgatgatgacgaagaaga 26688041
>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0708H12 Length = 162381 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 cgacgatgatgacgaagaaga 403 ||||||||||||||||||||| Sbjct: 50091 cgacgatgatgacgaagaaga 50071
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_F09 Length = 139371 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 cgacgatgatgacgaagaaga 403 ||||||||||||||||||||| Sbjct: 122222 cgacgatgatgacgaagaaga 122202
>dbj|AK107559.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B07, full insert sequence Length = 2349 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 cgacgatgatgacgaagaaga 403 ||||||||||||||||||||| Sbjct: 773 cgacgatgatgacgaagaaga 753
>emb|CR854904.9| Zebrafish DNA sequence from clone CH211-214F6 in linkage group 10, complete sequence Length = 116150 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 384 gacgatgatgacgaagaagaccaag 408 ||||| ||||||||||||||||||| Sbjct: 21639 gacgaagatgacgaagaagaccaag 21663
>gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence Length = 282600 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gcagaccgcccgccgccgccg 29 ||||||||||||||||||||| Sbjct: 28576 gcagaccgcccgccgccgccg 28596
>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence Length = 339089 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gcagaccgcccgccgccgccg 29 ||||||||||||||||||||| Sbjct: 1118 gcagaccgcccgccgccgccg 1138
>gb|U69259.1|SCU69259 Synthetic Plasmodium falciparum reductase-thymidylate synthase gene, complete cds Length = 1916 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 cgacgatgatgacgaagaaga 403 ||||||||||||||||||||| Sbjct: 874 cgacgatgatgacgaagaaga 894
>gb|AY609578.1| Sus scrofa clone Clu_19594.scr.msk.p1.Contig2, mRNA sequence Length = 1109 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 gctgctcctcctcttccgcct 72 ||||||||||||||||||||| Sbjct: 149 gctgctcctcctcttccgcct 129
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 ccgccgccgccgcttaccctc 38 ||||||||||||||||||||| Sbjct: 20736074 ccgccgccgccgcttaccctc 20736094
>gb|U17243.1|YSCL8003 Saccharomyces cerevisiae chromosome XII cosmid 8003 Length = 40214 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 cgacgatgatgacgaagaaga 403 ||||||||||||||||||||| Sbjct: 1496 cgacgatgatgacgaagaaga 1516
>ref|NM_105071.2| Arabidopsis thaliana nucleic acid binding AT1G63980 transcript variant AT1G63980.1 mRNA, complete cds Length = 1501 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 gatgatgacgaagaagaccaagag 410 |||||||||||||||||| ||||| Sbjct: 907 gatgatgacgaagaagacgaagag 930
>ref|NM_001036148.1| Arabidopsis thaliana nucleic acid binding AT1G63980 transcript variant AT1G63980.2 mRNA, complete cds Length = 1502 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 gatgatgacgaagaagaccaagag 410 |||||||||||||||||| ||||| Sbjct: 901 gatgatgacgaagaagacgaagag 924
>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence Length = 150306 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 505 ttgtttcgggaggtaaagatgaca 528 ||||||| |||||||||||||||| Sbjct: 55407 ttgtttcaggaggtaaagatgaca 55430
>ref|XM_630659.1| Dictyostelium discoideum hypothetical protein (DDB0188902), partial mRNA Length = 4869 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gacgatgatgacgaagaaga 403 |||||||||||||||||||| Sbjct: 3571 gacgatgatgacgaagaaga 3590
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gcgcagaccgcccgccgccg 26 |||||||||||||||||||| Sbjct: 3062712 gcgcagaccgcccgccgccg 3062731
>gb|AY700673.1| Helianthus tuberosus putative dicarboxylate/tricarboxylate carrier mRNA, partial cds Length = 669 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tctttgctgctgcatgcagt 485 |||||||||||||||||||| Sbjct: 473 tctttgctgctgcatgcagt 492
>ref|XM_430218.1| PREDICTED: Gallus gallus hypothetical gene supported by BX934189; CR405835 (LOC425189), mRNA Length = 498 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccgcccgccgccgccgctta 33 |||||||||||||||||||| Sbjct: 28 ccgcccgccgccgccgctta 47
>ref|XM_426168.1| PREDICTED: Gallus gallus similar to hypothetical protein (LOC428611), mRNA Length = 978 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 cccgctgctcctcctcttcc 68 |||||||||||||||||||| Sbjct: 381 cccgctgctcctcctcttcc 400
>ref|XM_329531.1| Neurospora crassa OR74A hypothetical protein (NCU08487.1) partial mRNA Length = 3996 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 373 aagacgatgccgacgatgatgacgaagaagaccaag 408 ||||||||| ||| ||||||||||| || ||||||| Sbjct: 3239 aagacgatgacgatgatgatgacgacgacgaccaag 3274
>ref|XM_958323.1| Neurospora crassa OR74A hypothetical protein (NCU08487.1) partial mRNA Length = 3996 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 373 aagacgatgccgacgatgatgacgaagaagaccaag 408 ||||||||| ||| ||||||||||| || ||||||| Sbjct: 3239 aagacgatgacgatgatgatgacgacgacgaccaag 3274
>gb|AE009197.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 223 of 256 of the complete sequence Length = 12755 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 acgatgatgacgaagaagac 404 |||||||||||||||||||| Sbjct: 4952 acgatgatgacgaagaagac 4933
>ref|XM_704929.1| Candida albicans SC5314 ubiquitin protein ligase-like protein (CaO19.1173), mRNA Length = 2398 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gacgatgatgacgaagaaga 403 |||||||||||||||||||| Sbjct: 853 gacgatgatgacgaagaaga 872
>gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete sequence Length = 164963 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 gggaggtaaagatgacagag 531 |||||||||||||||||||| Sbjct: 129161 gggaggtaaagatgacagag 129142
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 93 gctgccactcgtccagccaccggtgagc 120 ||||||||| ||||||||||||||||| Sbjct: 3046073 gctgccacttttccagccaccggtgagc 3046046
>gb|AC146503.2| Danio rerio clone CH211-271F10, complete sequence Length = 128207 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 cagatgcatcacttgttgtt 509 |||||||||||||||||||| Sbjct: 36304 cagatgcatcacttgttgtt 36323
>ref|XM_747503.1| Aspergillus fumigatus Af293 nucleoporin (Afu1g12280) partial mRNA Length = 1293 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 tttggaggattggggcagca 557 |||||||||||||||||||| Sbjct: 321 tttggaggattggggcagca 340
>ref|XM_751963.1| Ustilago maydis 521 hypothetical protein (UM00909.1) partial mRNA Length = 3792 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 369 gaccaagacgatgccgacgatgatgacgaagaagac 404 |||||||||||| |||||||||||||| |||||| Sbjct: 313 gaccaagacgatcaagacgatgatgacgacgaagac 348
>ref|XM_748771.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g07720) partial mRNA Length = 1020 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 373 aagacgatgccgacgatgatgacgaaga 400 ||||||||| ||||||||||||||||| Sbjct: 704 aagacgatgaggacgatgatgacgaaga 731
>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene cluster, complete sequence Length = 138203 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gcgcagaccgcccgccgccg 26 |||||||||||||||||||| Sbjct: 16034 gcgcagaccgcccgccgccg 16053
>ref|XM_815856.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511283.220) partial mRNA Length = 1686 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gacgatgatgacgaagaaga 403 |||||||||||||||||||| Sbjct: 1513 gacgatgatgacgaagaaga 1532
>emb|CR665139.2|CNS0FC6X Tetraodon nigroviridis full-length cDNA Length = 1920 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gacgatgccgacgatgatga 394 |||||||||||||||||||| Sbjct: 1803 gacgatgccgacgatgatga 1784
>gb|AC137832.40| Medicago truncatula clone mth2-22i17, complete sequence Length = 127688 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gacgatgccgacgatgatga 394 |||||||||||||||||||| Sbjct: 10665 gacgatgccgacgatgatga 10684
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 ggagatacatcttgatgaggaaga 361 ||||||| |||||||||||||||| Sbjct: 2141690 ggagataaatcttgatgaggaaga 2141667
>gb|AC157934.3| Mus musculus chromosome 5, clone RP24-224K15, complete sequence Length = 160733 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 505 ttgtttcgggaggtaaagatgaca 528 ||||||| |||||||||||||||| Sbjct: 125991 ttgtttcaggaggtaaagatgaca 126014
>emb|X87337.1|MMNUPRAN2 M.musculus mRNA for RanBP2 protein Length = 3795 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aggaagatctccctgaccaa 374 |||||||||||||||||||| Sbjct: 1413 aggaagatctccctgaccaa 1394
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 ggagatacatcttgatgagg 357 |||||||||||||||||||| Sbjct: 4201459 ggagatacatcttgatgagg 4201440
>emb|BX649605.1| Aspergillus fumigatus BAC pilot project supercontig; segment 1/3 Length = 345637 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 tttggaggattggggcagca 557 |||||||||||||||||||| Sbjct: 283750 tttggaggattggggcagca 283731
>emb|AL683874.1|AFA14E5 Aspergillus fumigatus BAC AfA14E5 Length = 68100 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 tttggaggattggggcagca 557 |||||||||||||||||||| Sbjct: 32314 tttggaggattggggcagca 32295
>emb|AL356834.1|NCB11B22 Neurospora crassa DNA linkage group II BAC clone B11B22 Length = 73803 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 373 aagacgatgccgacgatgatgacgaagaagaccaag 408 ||||||||| ||| ||||||||||| || ||||||| Sbjct: 52233 aagacgatgacgatgatgatgacgacgacgaccaag 52198
>emb|AJ300302.1|SGR300302 Streptomyces griseus partial ORF1, canA gene, canC gene, canF gene, canT gene, canRA gene and canRB gene Length = 39314 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gcgcagaccgcccgccgccg 26 |||||||||||||||||||| Sbjct: 10606 gcgcagaccgcccgccgccg 10625
>emb|AJ006422.1|HSA6422 Homo sapiens mRNA for centaurin-alpha Length = 1562 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 gcgcagaccgcccgccgccgccgc 30 |||||| ||||||||||||||||| Sbjct: 131 gcgcaggccgcccgccgccgccgc 108
>dbj|AB097049.1| Homo sapiens mRNA for putative MAPK activating protein, complete cds, clone: PM25 Length = 2378 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 gcgcagaccgcccgccgccgccgc 30 |||||| ||||||||||||||||| Sbjct: 109 gcgcaggccgcccgccgccgccgc 86
>ref|NM_006869.1| Homo sapiens centaurin, alpha 1 (CENTA1), mRNA Length = 2378 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 gcgcagaccgcccgccgccgccgc 30 |||||| ||||||||||||||||| Sbjct: 109 gcgcaggccgcccgccgccgccgc 86
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 acgatgatgacgaagaagac 404 |||||||||||||||||||| Sbjct: 2475047 acgatgatgacgaagaagac 2475028
>gb|AC073957.7| Homo sapiens BAC clone RP11-449P15 from 7, complete sequence Length = 196204 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 gcgcagaccgcccgccgccgccgc 30 |||||| ||||||||||||||||| Sbjct: 75609 gcgcaggccgcccgccgccgccgc 75632
>gb|AY054272.1| Arabidopsis thaliana At1g63980/F22C12_9 mRNA, complete cds Length = 1470 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 gatgatgacgaagaagaccaagag 410 |||||||||||||||||| ||||| Sbjct: 907 gatgatgacgaagaagacgaagag 930
>emb|CR405835.1| Gallus gallus finished cDNA, clone ChEST573k5 Length = 754 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccgcccgccgccgccgctta 33 |||||||||||||||||||| Sbjct: 279 ccgcccgccgccgccgctta 298
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gacgatgatgacgaagaaga 403 |||||||||||||||||||| Sbjct: 399489 gacgatgatgacgaagaaga 399508
>gb|AC159232.2| Mus musculus BAC clone RP24-392E16 from chromosome 13, complete sequence Length = 169281 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 agatgaggtctttgctgctg 477 |||||||||||||||||||| Sbjct: 27730 agatgaggtctttgctgctg 27711
>dbj|AK049464.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430015A09 product:RAN binding protein 2, full insert sequence Length = 1551 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aggaagatctccctgaccaa 374 |||||||||||||||||||| Sbjct: 689 aggaagatctccctgaccaa 670
>gb|AF279458.1|AF279458 Mus musculus Ran-binding protein 2 gene, complete cds Length = 57752 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aggaagatctccctgaccaa 374 |||||||||||||||||||| Sbjct: 39380 aggaagatctccctgaccaa 39361
>gb|AC158593.8| Mus musculus 10 BAC RP23-197F5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 216621 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aggaagatctccctgaccaa 374 |||||||||||||||||||| Sbjct: 52196 aggaagatctccctgaccaa 52177
>gb|AC090839.1|AC090839 Caenorhabditis briggsae cosmid CB022O18, complete sequence Length = 74100 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 agacgatgccgacgatgatg 393 |||||||||||||||||||| Sbjct: 49238 agacgatgccgacgatgatg 49219
>emb|BX815347.1|CNS0AAGJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS54ZA07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1453 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 gatgatgacgaagaagaccaagag 410 |||||||||||||||||| ||||| Sbjct: 883 gatgatgacgaagaagacgaagag 906
>gb|AC149207.3| Medicago truncatula chromosome 2 BAC clone mte1-60l24, complete sequence Length = 107210 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gacgatgatgacgaagaaga 403 |||||||||||||||||||| Sbjct: 74953 gacgatgatgacgaagaaga 74972
>gb|AC078930.13|AC078930 Mus musculus 10 BAC 280B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 226168 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aggaagatctccctgaccaa 374 |||||||||||||||||||| Sbjct: 55071 aggaagatctccctgaccaa 55052
>emb|BX934189.1| Gallus gallus finished cDNA, clone ChEST444p7 Length = 632 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccgcccgccgccgccgctta 33 |||||||||||||||||||| Sbjct: 162 ccgcccgccgccgccgctta 181
>gb|AC007764.2|AC007764 Genomic sequence for Arabidopsis thaliana BAC F22C12 from chromosome I, complete sequence Length = 111222 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gatgatgacgaagaagaccaagag 410 |||||||||||||||||| ||||| Sbjct: 108491 gatgatgacgaagaagacgaagag 108468
>gb|AC155901.2| Loxodonta africana, clone Loxodonta africana-6767875H2, complete sequence Length = 41309 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 atcactcaacttatgcattt 446 |||||||||||||||||||| Sbjct: 29963 atcactcaacttatgcattt 29982
>gb|AC016678.4|AC016678 Homo sapiens BAC clone RP11-55O11 from Y, complete sequence Length = 142982 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gcaggacatcatccaggaga 342 |||||||||||||||||||| Sbjct: 132726 gcaggacatcatccaggaga 132707
>gb|BT002689.1| Arabidopsis thaliana At1g63980/F22C12_9 gene, complete cds Length = 1176 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 gatgatgacgaagaagaccaagag 410 |||||||||||||||||| ||||| Sbjct: 823 gatgatgacgaagaagacgaagag 846
>gb|AC006670.1| Caenorhabditis elegans cosmid K07A3, complete sequence Length = 36454 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 cccgccgccgccgcttaccc 36 |||||||||||||||||||| Sbjct: 22360 cccgccgccgccgcttaccc 22341
>gb|AF082324.1|AF082324 Homo sapiens phosphatidylinositol(3,4,5)trisphosphate binding protein p42IP4 mRNA, complete cds Length = 2378 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 gcgcagaccgcccgccgccgccgc 30 |||||| ||||||||||||||||| Sbjct: 109 gcgcaggccgcccgccgccgccgc 86
>ref|NM_011240.2| Mus musculus RAN binding protein 2 (Ranbp2), mRNA Length = 9477 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aggaagatctccctgaccaa 374 |||||||||||||||||||| Sbjct: 4493 aggaagatctccctgaccaa 4474
>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome Length = 1197687 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gatgacgaagaagaccaaga 409 |||||||||||||||||||| Sbjct: 301992 gatgacgaagaagaccaaga 301973
>dbj|AB007832.1| Bombyx mori mRNA for Bm trachealess, complete cds Length = 4951 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 373 aagacgatgccgacgatgatgacgaagaagac 404 ||||||| | ||||||||||||||| |||||| Sbjct: 4047 aagacgagggcgacgatgatgacgacgaagac 4078 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,047,221 Number of Sequences: 3902068 Number of extensions: 5047221 Number of successful extensions: 133494 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132612 Number of HSP's gapped (non-prelim): 879 length of query: 575 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 552 effective length of database: 17,143,297,704 effective search space: 9463100332608 effective search space used: 9463100332608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
