ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart45b07 |
|---|---|
| Clone Library Name | barley_pub |
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 31.6 bits (70), Expect = 1.4 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +2 Query: 17 SNRPSREMGRRRRFTHQPTSDDDDEEDRAAPQPLRTTKPTAPPSSGAKK 163 SN + E+GRRRR +H + + + P P R + +PP + ++ Sbjct: 505 SNVKNGEVGRRRRHSHSRSPSPSPRKRQKEPSPRRRRRSPSPPPARRRR 553
>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early| protein IE110) (VMW110) (Alpha-0 protein) Length = 775 Score = 30.8 bits (68), Expect = 2.4 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 5/38 (13%) Frame = +2 Query: 59 TH-QPTSDDDDEE----DRAAPQPLRTTKPTAPPSSGA 157 TH +PT+D+DD++ D P P RT P APP GA Sbjct: 226 THPEPTTDEDDDDLDDADYVPPAPRRT--PRAPPRRGA 261
>MYO3_YEAST (P36006) Myosin-3| Length = 1273 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = +2 Query: 17 SNRPSREMGRRRRFTHQPTSDDDDEEDRAAPQPLRTTKPTAPPSSGAKKQQ 169 S +P + + + TH+ T D A QPL + KP P S A Q Sbjct: 977 SGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQ 1027
>MAX_XENLA (Q07016) Protein max (Myc-associated factor X) (xMAX)| Length = 163 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +2 Query: 44 RRRRFTHQPTSDDDDEEDRAAPQPLRTTKPTAPPSSGAKKQQ 169 RR+ THQ DD ++ Q ++ + P PPS+GA +Q+ Sbjct: 75 RRKNHTHQQDIDDLKRQNALLEQQVQISNP-KPPSNGAPEQK 115
>DCR1C_BRARE (Q5RGE5) Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C| protein) Length = 639 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +2 Query: 71 TSDDDDEEDRAAPQPLRTTKPTAPPSSGAKKQQRH 175 ++DDDD+ED AA Q T PPSS K +H Sbjct: 455 SNDDDDDEDDAAEQ---TPAAAPPPSSTEKPCSKH 486
>PME5_CAEEL (Q9TXQ1) Poly(ADP-ribose) polymerase pme-5 (EC 2.4.2.30) (Poly| ADP-ribose metabolism enzyme 5) Length = 2276 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Frame = +2 Query: 71 TSDDDDEEDRAAPQPL---RTTKPTAPPSSGAKKQQ 169 + D+DD++D ++P P R K A PS+G K+++ Sbjct: 1612 SDDEDDDDDDSSPPPAKKSRIAKEAAGPSTGPKRKK 1647
>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1054 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = +2 Query: 26 PSREMGRRRRFTHQPTSDDDDEEDRAAPQ-PLRTTKPTAPPSSGAKK 163 P+ E+ + T + D DD + PQ P + KPT P+ KK Sbjct: 637 PAEEIQNKPEETTPASEDSDDSKTTLKPQKPTKAPKPTKKPTKAPKK 683
>DAXX_MOUSE (O35613) Death domain-associated protein 6 (Daxx)| Length = 739 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +2 Query: 80 DDDEEDRAAPQPLRTTKPTAPPSSG 154 DDD+ED AA QP + P P S+G Sbjct: 11 DDDDEDEAAAQPGPSNLPPNPASTG 35
>MLF_DROME (Q9NKV0) Myeloid leukemia factor (Myelodysplasia-myeloid leukemia| factor) (dMLF) Length = 309 Score = 29.3 bits (64), Expect = 6.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 10/52 (19%) Frame = +2 Query: 26 PSREMGRRRRFTHQPTSDDDDEEDRAA---PQPLR-------TTKPTAPPSS 151 P+R T +P DDDD++D QP+R ++ PTAP +S Sbjct: 219 PARPAAHTSTLTIEPVEDDDDDDDDCVIQEQQPVRSSAGRHYSSAPTAPQNS 270
>VSX1_HUMAN (Q9NZR4) Visual system homeobox 1 (Transcription factor VSX1)| (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX) Length = 365 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +2 Query: 20 NRPSREMGRRRRFTHQPTSDDDDE-EDRAAPQPLRTTKPTAPPSSGAKKQQRH 175 +RP +GR++R TSD+D + EDR A P+ G +K++RH Sbjct: 123 SRPPPALGRQKRSDSVSTSDEDSQSEDR--------NDLKASPTLGKRKKRRH 167
>VE2_HPV38 (Q80910) Regulatory protein E2| Length = 441 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = +2 Query: 68 PTSDDDDEEDRAA-PQPLRTTKPTAPPSSGAKKQQR 172 P D D RAA P+P + P PPS A++ R Sbjct: 204 PVGDSTDSASRAALPEPSTSVSPERPPSQTARRYGR 239
>DEDD2_MOUSE (Q8QZV0) DNA-binding death effector domain-containing protein 2| (FADD-like anti-apoptotic molecule 3) (DED-containing protein FLAME-3) Length = 330 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = +2 Query: 17 SNRPSREMGRRRRFTHQPTSDDDDEEDRAAPQPLRTTKPTAPPSSGAKKQQR 172 S++ + + RRRR + + D +P R + PSSGA++++R Sbjct: 123 SSKRTEDSCRRRRQASSSSDSPQSQWDTGSPPTKRQRRSRGRPSSGARQRRR 174
>ADRB1_SHEEP (Q28927) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) (BETA1AR) Length = 467 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +2 Query: 77 DDDDEEDRAAPQPLRTTKPTAPPSSGA 157 DDDDE+D A P+R +P A + GA Sbjct: 419 DDDDEDDVGAAPPVRLLQPWAGYNGGA 445
>ADRB1_BOVIN (Q9TT96) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 467 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +2 Query: 77 DDDDEEDRAAPQPLRTTKPTAPPSSGA 157 DDDDE+D A P+R +P A + GA Sbjct: 419 DDDDEDDVGAAPPVRLLEPWAGYNGGA 445 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,723,662 Number of Sequences: 219361 Number of extensions: 436607 Number of successful extensions: 2721 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2509 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2694 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
