ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart45b06 |
|---|---|
| Clone Library Name | barley_pub |
>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Homozygously deleted in neuroblastoma 1) Length = 1302 Score = 35.8 bits (81), Expect = 0.080 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Frame = +1 Query: 157 ESAQKP*PA--AQLPMAANSNPSPSAGGD---VPTPALPPVRLAAGQAATIQPSSPRY 315 ES+ P P+ + +P+ S SPS VP+ L P A+G AA QPSSPRY Sbjct: 273 ESSPAPTPSFWSSVPVMGPSLASPSRAASQLAVPSTPLSPHSAASGTAAGSQPSSPRY 330
>SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 33.1 bits (74), Expect = 0.52 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = +1 Query: 178 PAAQLP-MAANSNPSPSAG--GDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDA 345 PA Q P + SNP P A G PTP LPP +A AA ++P + +Y +A KD+ Sbjct: 59 PATQPPPLLPPSNPGPDATVVGSAPTPLLPP---SATAAAKMEPEN-KYLPELMAEKDS 113
>FMNL_MOUSE (Q9JL26) Formin-like 1 protein (Formin-related protein)| Length = 1094 Score = 28.9 bits (63), Expect(2) = 0.57 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = +1 Query: 145 TRREESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 309 +++E P A LP A P+P GD+P P PP G P P Sbjct: 553 SQQEAPPSAPPLAPPLPGCAEPPPAPPLPGDLPPPPPPPPLGTDGPVPPPPPPPP 607 Score = 22.7 bits (47), Expect(2) = 0.57 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = +2 Query: 5 AARPFLPSFHPPAYSLD-PSISNQNLQSASPHPTPP 109 AA P P S D PS + ++ASP P PP Sbjct: 507 AATPSGDDAQAPRVSTDSPSTAESIPEAASPPPPPP 542
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 32.3 bits (72), Expect = 0.88 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = +1 Query: 151 REESAQKP*PAAQLPMAANSNPSPSAGGDVPTP-ALPPVRLAAGQAATIQPSSPR 312 RE A +P P P A P P G P P A P R AA Q +P PR Sbjct: 191 RERPAARPGPGGPRPGPAQGGPRPGPGQGAPRPGATPGPRPAAAQGGP-RPGGPR 244
>YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I| Length = 601 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +1 Query: 343 ASSHHRRIA--IAVDLSDESAFAVRWAVQNYLRPGDAVVLLHV 465 ASS R + +DLS ES A WAV LR GD ++++ V Sbjct: 424 ASSSKRNCTYFLTLDLSSESLHAAEWAVGILLRNGDTLIIVDV 466
>Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 intergenic| region Length = 224 Score = 31.2 bits (69), Expect = 2.0 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = +1 Query: 178 PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPS-----SPRYFFSSLAGKD 342 P + +P +P PS PTP+ PP + + PS P Y+ S++ + Sbjct: 94 PPSPIPPTPTPSPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPSPLGEPMYYPSNIDTNE 153 Query: 343 ASSHHRRIAIAVDLSDESAFAVRW 414 A + R A D + + +AV W Sbjct: 154 ALINFLRPLCATDRT-RATYAVPW 176
>POLR_ELV (P35928) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1748 Score = 25.0 bits (53), Expect(2) = 2.4 Identities = 17/49 (34%), Positives = 19/49 (38%) Frame = +1 Query: 160 SAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSS 306 +A P P AQ P P P P P P + A Q AT P S Sbjct: 576 AAPHPLPPAQKP------PRPPTTVPTPKPLASPSQTQAAQPATQSPPS 618 Score = 24.3 bits (51), Expect(2) = 2.4 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = +2 Query: 17 FLPS--FHPPAYSLDPSISNQNLQSASPHPTPP 109 FLPS PPA PSI+ A+PHP PP Sbjct: 560 FLPSSCLQPPA---SPSIA------AAPHPLPP 583
>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A (Transcription| termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) (hWALp3) Length = 1878 Score = 30.8 bits (68), Expect = 2.6 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 12/79 (15%) Frame = +1 Query: 136 PE*TRREESAQKP*P-------AAQLPMAANSNPSPSAGGDVPTPALPPVRLAA----GQ 282 PE +E+ P P +AQ+P A P P+ D PTP+ P +LA+ + Sbjct: 1278 PEEPEPDEAESSPDPQALWFNISAQMPCNAAPTPPPAVSEDQPTPS--PQQLASSKPMNR 1335 Query: 283 AATIQPSSPRYFFSS-LAG 336 + P SP F S+ LAG Sbjct: 1336 PSAANPCSPVQFSSTPLAG 1354
>ERF2_SCHPO (O74718) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 662 Score = 28.1 bits (61), Expect(2) = 2.6 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%) Frame = +2 Query: 8 ARPFLPSFHPPAYSLDPSI---------SNQNLQSASPHPTPPWIKSATEKSRNKLGEKS 160 A PF+PSF P + +I + Q S SPHPT + + + + N + E Sbjct: 35 AAPFIPSFQRPGFVPVNNIAGGYPYAQYTGQGQNSNSPHPTKSYQQYYQKPTGNTVDEDK 94 Query: 161 QR 166 R Sbjct: 95 SR 96 Score = 21.2 bits (43), Expect(2) = 2.6 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = +1 Query: 241 PTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDASSHHRRIAIAVDLSDES 396 P PA+P ++ + T P S + SL G A + + A A E+ Sbjct: 109 PKPAIPKGKVLSLGGNTSAPKSTKPISISLGGTKAPTTTKPAAPAAQSKTET 160
>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2| Length = 902 Score = 30.4 bits (67), Expect = 3.3 Identities = 32/114 (28%), Positives = 47/114 (41%) Frame = +1 Query: 127 REIPE*TRREESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSS 306 R+ E SA P AA P +A + +PS+ P PA P A + AT P+ Sbjct: 173 RKAAEEAAAAASAPAPVAAAPAPSSAPAARAPSSPSSAPRPARPAGASPASRPAT--PAR 230 Query: 307 PRYFFSSLAGKDASSHHRRIAIAVDLSDESAFAVRWAVQNYLRPGDAVVLLHVR 468 P ++ K SH + + D+ A R+A Q +L D +VR Sbjct: 231 PDDRNNAAKHKTRGSH----VMVAGVEDDDA-TKRFAGQLHLSAADRARRSNVR 279
>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2| Length = 916 Score = 30.4 bits (67), Expect = 3.3 Identities = 32/114 (28%), Positives = 47/114 (41%) Frame = +1 Query: 127 REIPE*TRREESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSS 306 R+ E SA P AA P +A + +PS+ P PA P A + AT P+ Sbjct: 187 RKAAEEAAAAASAPAPVAAAPAPSSAPAARAPSSPSSAPRPARPAGASPASRPAT--PAR 244 Query: 307 PRYFFSSLAGKDASSHHRRIAIAVDLSDESAFAVRWAVQNYLRPGDAVVLLHVR 468 P ++ K SH + + D+ A R+A Q +L D +VR Sbjct: 245 PDDRNNAAKHKTRGSH----VMVAGVEDDDA-TKRFAGQLHLSAADRARRSNVR 293
>TATB_PSEAE (Q9HUB4) Sec-independent protein translocase protein tatB homolog| Length = 141 Score = 30.0 bits (66), Expect = 4.4 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +1 Query: 145 TRREESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAA--GQAATIQPSSP 309 T + + P PAA+ P + P P++ TPA+PP AA AA+ PS P Sbjct: 83 TGQNPPQETPPPAAESPAPSVPTPPPTS-----TPAVPPADAAAPPAVAASTPPSPP 134
>MECT1_HUMAN (Q6UUV9) Mucoepidermoid carcinoma translocated protein 1| (Transducer of regulated cAMP response element-binding protein 1) (Transducer of CREB protein 1) Length = 634 Score = 30.0 bits (66), Expect = 4.4 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +1 Query: 184 AQLPMAANSNPS-PSAGGDVPT-PALPPVRLAAGQAATIQPSSP 309 + LP + NP PS G D+ + PAL R +AG A P+SP Sbjct: 419 SSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSP 462
>IF2_XANOR (Q5GXU9) Translation initiation factor IF-2| Length = 906 Score = 30.0 bits (66), Expect = 4.4 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 7/73 (9%) Frame = +1 Query: 112 DQIRHREIPE*TRREESAQKP*P-----AAQLPMAANSNPSPSAGGDVPTP--ALPPVRL 270 D++R EI R EE A K AA+ AA S P+P+ PTP A P R Sbjct: 148 DRVRDEEIQR-KRDEEQAAKDRAEAERKAAEEAAAAASAPAPAPVAAAPTPSAAAPAARA 206 Query: 271 AAGQAATIQPSSP 309 + ++ +PS P Sbjct: 207 PSSPSSAPRPSRP 219
>GBF1_HUMAN (Q92538) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1859 Score = 30.0 bits (66), Expect = 4.4 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Frame = +1 Query: 178 PAAQLPMAANSNPSPSAGGDVPTPALPP---VRLAAGQAATIQPSSPRYFFSSLAGKDAS 348 P Q P+A S SA GD TP PP + G +P SPR SS G + Sbjct: 1730 PQGQKPLA--SAHLTSAAGDTRTPGHPPPPEIPSELGACDFEKPESPRAASSSSPGSPVA 1787 Query: 349 SHHRRIAIAVD 381 S R++ D Sbjct: 1788 SSPSRLSPTPD 1798
>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 30.0 bits (66), Expect = 4.4 Identities = 19/56 (33%), Positives = 30/56 (53%) Frame = +1 Query: 178 PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDA 345 P LP +A + P + GG PTP LPP +A + ++P + +Y +A KD+ Sbjct: 63 PPPLLPPSA-TGPDATVGGPAPTPLLPP---SATASVKMEPEN-KYLPELMAEKDS 113
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 30.0 bits (66), Expect = 4.4 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +2 Query: 2 GAARPFLPSFHPPA--YSLDPSISNQNLQSASPHPTPPWIKSATEKSRNKL---GEKSQR 166 G + P P PP Y PS+ N Q +SP P P +++ T S++ G K Q+ Sbjct: 1556 GPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQK 1615 Query: 167 KNP 175 P Sbjct: 1616 AGP 1618
>YCX1_CHLRE (P05723) Hypothetical 12.2 kDa protein in 16S rRNA region| Length = 111 Score = 29.6 bits (65), Expect = 5.7 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Frame = +1 Query: 211 NPSPSA--GGDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDASSHHRRIAIAVDL 384 NP P A G +P P +PPV T PS PR F+S A K S ++ + Sbjct: 48 NPIPLAVMRGGIPLPGMPPV-------PTATPSLPRSGFTSSAKKIKESRKQKSTALQAV 100 Query: 385 SDE 393 D+ Sbjct: 101 KDQ 103
>NEDD4_DROME (Q9VVI3) E3 ubiquitin-protein ligase Nedd-4 (EC 6.3.2.-) (DNedd4)| Length = 1007 Score = 29.6 bits (65), Expect = 5.7 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 7/71 (9%) Frame = +1 Query: 181 AAQLPMAANSNPSPSAGGDVPTPALPPVRLA---AGQAATIQP----SSPRYFFSSLAGK 339 AA LP+ ++S S AGGDVP P PP R A AGQ T Q +PR +++ Sbjct: 11 AAALPVPSSS--SSVAGGDVPRP--PPRRRAASVAGQQQTRQEFGNGYTPRRSLAAVNDS 66 Query: 340 DASSHHRRIAI 372 S H R + + Sbjct: 67 GDSCHLRIVVL 77
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 29.6 bits (65), Expect = 5.7 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +2 Query: 14 PFLPSFHPPAYSLDPSISNQNLQSASPHPTP 106 P LPS HPP L P + + SA PHP P Sbjct: 808 PRLPSPHPP---LQPMTAPPSQNSAQPHPQP 835
>SWC4_NEUCR (Q870Q1) SWR1-complex protein 4| Length = 771 Score = 29.6 bits (65), Expect = 5.7 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = +1 Query: 196 MAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSPR---YFFSSLAGKDASSHH 357 MA + P+A T ALPP A A + P++ R SS AG A+ HH Sbjct: 336 MAPENGVPPAAAAAAATAALPPAAAAVAAAPEVPPAASRRESLAASSTAG--ANDHH 390
>SECD_MYCTU (Q50634) Protein-export membrane protein secD| Length = 573 Score = 29.6 bits (65), Expect = 5.7 Identities = 19/60 (31%), Positives = 24/60 (40%) Frame = +2 Query: 2 GAARPFLPSFHPPAYSLDPSISNQNLQSASPHPTPPWIKSATEKSRNKLGEKSQRKNPSQ 181 GA P P Y DP+ S ASP P PP AT+ ++ +Q K Q Sbjct: 157 GAPASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQ 216
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 29.6 bits (65), Expect = 5.7 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +2 Query: 14 PFLPSFHPPAYSLDPSISNQNLQSASPHPTP 106 P LPS HPP L P + + SA PHP P Sbjct: 809 PRLPSPHPP---LQPMTAPPSQSSAQPHPQP 836
>POP1_HUMAN (Q99575) Ribonucleases P/MRP protein subunit POP1 (EC 3.1.26.5)| (hPOP1) Length = 1024 Score = 29.6 bits (65), Expect = 5.7 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 86 ASPHPTPPWIKSATEKSRNKLGEKSQRKNPSQ 181 A P PTP KS TE K+G+K +RK+ + Sbjct: 360 ADPLPTPSQEKSQTELPDEKIGKKRKRKDDGE 391
>PHOSP_PI3B (P06163) Phosphoprotein (Protein P)| Length = 596 Score = 29.6 bits (65), Expect = 5.7 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = -2 Query: 518 TETGMEPQSAP*RTEVGRTWRSTTASPGRR*FCTAQRTAKADSSERSTAMAMRRWWEEA 342 +E+G +S +++ + +S T PGR + +T K D ER R+ E A Sbjct: 300 SESGSRTESTSQNSQIPTSGKSNTVGPGRTTLESRIKTQKTDGKEREDTEESTRFTERA 358
>SRBS1_HUMAN (Q9BX66) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1292 Score = 26.9 bits (58), Expect(2) = 6.7 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +1 Query: 229 GGDVPTPALPPVRLAAGQAATIQPSSPRYF 318 GGD+P L ++ + A+T SPR+F Sbjct: 688 GGDIPLQGLSGLKRPSSSASTKDSESPRHF 717 Score = 20.8 bits (42), Expect(2) = 6.7 Identities = 6/22 (27%), Positives = 13/22 (59%) Frame = +1 Query: 178 PAAQLPMAANSNPSPSAGGDVP 243 P+A +P ++ +P+P + P Sbjct: 629 PSANVPQSSAISPTPEISSETP 650
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 29.3 bits (64), Expect = 7.5 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +1 Query: 151 REESAQKP*PAAQLPMAANSNPSPSAGGDVPTPALP 258 +++ + KP P+ Q A++ PSAGG+ P PA+P Sbjct: 66 KKKPSPKPQPSPQQQTKASA---PSAGGETPRPAVP 98
>IMPX_YEAST (P32351) Sugar utilization regulatory protein IMP2| Length = 346 Score = 29.3 bits (64), Expect = 7.5 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +1 Query: 331 AGKDASSHHRRIAIAVDLSDESAFAVRWAVQNYLRPGDAVVLLHVRPT 474 AG +A + R + DLS ES +A+ + + + GD V ++H P+ Sbjct: 202 AGAEAGNQ-RSFILYTDLSSESTYALTYLMGAAVNQGDTVYIVHWEPS 248
>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum| protein MSE55) Length = 391 Score = 29.3 bits (64), Expect = 7.5 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = +1 Query: 160 SAQKP*PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 309 +A+ P PAA P A +NP+ A T A PP A A P+ P Sbjct: 221 AAETPAPAAN-PPAPTANPTGPAANPPATTANPPAPAANPSAPAATPTGP 269 Score = 29.3 bits (64), Expect = 7.5 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +1 Query: 178 PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 309 PAA+ P A + P+P+A P A PP A A PS+P Sbjct: 220 PAAETPAPAANPPAPTANPTGPA-ANPPATTANPPAPAANPSAP 262
>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT| transcription complex cytosolic component) (NF-ATc1) (NF-ATc) Length = 943 Score = 29.3 bits (64), Expect = 7.5 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = +1 Query: 178 PAAQLPMAANSNPSPSAGGDVPTPA-LPPVRLAAGQAATIQPSSPRYFFSS 327 PA LP A ++ P+P TP +PP +G A + YF SS Sbjct: 54 PALPLPTAHSTLPAPCHNLQTSTPGIIPPADHPSGYGAALDGGPAGYFLSS 104
>S12A2_SQUAC (P55013) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (NA-K-CL symporter) (NKCC) Length = 1191 Score = 29.3 bits (64), Expect = 7.5 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 178 PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQA 285 PA+ + + S P P AG P P P+R A Q+ Sbjct: 6 PASSAGVQSQSGPEPGAGQQEPPPPATPLRPVASQS 41
>VGLC_VZVS (P10241) Glycoprotein GPV| Length = 591 Score = 29.3 bits (64), Expect = 7.5 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%) Frame = +1 Query: 160 SAQKP*PAAQLPMAANSNPSP-----SAGGDVPTPALPPVRLAAGQ---AATIQPSSPRY 315 +++KP PA AA P P SA P PA+ P A + AA Q S P + Sbjct: 123 ASRKPDPAVAPTSAATRKPDPAVAPTSAATRNPDPAVAPTSAATRKPDPAANAQHSQPPF 182 Query: 316 FFSSL 330 F ++ Sbjct: 183 LFENI 187
>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein| (Dystrophia myotonica-containing WD repeat motif protein) (DMR-N9 protein) Length = 650 Score = 29.3 bits (64), Expect = 7.5 Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 13/56 (23%) Frame = +1 Query: 145 TRRE--ESAQKP*P-----------AAQLPMAANSNPSPSAGGDVPTPALPPVRLA 273 TRR SAQ P P AA P AA SP G P PALP VRL+ Sbjct: 26 TRRSGPTSAQTPAPPQPTQPPPGPAAASGPGAAGPASSPPPAGPGPGPALPAVRLS 81
>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 29.3 bits (64), Expect = 7.5 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = +1 Query: 178 PAAQLP-MAANSNPSPSAG--GDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDA 345 PA Q P + S P P A G PTP LPP +A A ++P + +Y +A KD+ Sbjct: 59 PATQPPPLLPPSTPGPDATVVGSAPTPLLPP---SATAAVKMEPEN-KYLPELMAEKDS 113
>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting| gene 1) (Rig-1) Length = 1366 Score = 25.4 bits (54), Expect(2) = 8.6 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = +1 Query: 232 GDVPTPALPPV----RLAAGQAATIQPSSPR 312 GD+P P LPP +LA G A + Q PR Sbjct: 1265 GDLPPPPLPPPELRDKLALGSAGSRQHVFPR 1295 Score = 21.9 bits (45), Expect(2) = 8.6 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +2 Query: 86 ASPHPTPPWIKSATEKSRNKLGE 154 ASP P P SA ++R GE Sbjct: 1215 ASPSPVPSTASSAPGRTRQVTGE 1237
>MUTL_LACPL (Q88UZ8) DNA mismatch repair protein mutL| Length = 678 Score = 28.9 bits (63), Expect = 9.7 Identities = 23/71 (32%), Positives = 35/71 (49%) Frame = +1 Query: 187 QLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDASSHHRRI 366 QL M N+ S D TPA A+ AAT+QPSS S+ + + ++ + R Sbjct: 349 QLAMDLNAVSSQYQVADKTTPASTEQFAASLAAATMQPSSATTMVSTTSAQPSAVN--RA 406 Query: 367 AIAVDLSDESA 399 A++ + ESA Sbjct: 407 AVSAVVPSESA 417
>HSCA_PSEAE (Q51382) Chaperone protein hscA homolog| Length = 619 Score = 28.9 bits (63), Expect = 9.7 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +1 Query: 334 GKDASSHHRRIAIAVDLSDESAF--AVRWAVQNYLRPGDAVVLLHVRPTSVLYGADWGSI 507 G+ H RR+A+ +DL ++ AVR V L ++L P++V Y A+ + Sbjct: 10 GQSPKPHERRLAVGIDLGTTNSLVAAVRSGVAEPLPDAQGRLIL---PSAVRYHAERAEV 66 Query: 508 PVSVADDDAED 540 S AED Sbjct: 67 GESARAAAAED 77
>SO1C1_RAT (Q9EPZ7) Solute carrier organic anion transporter family member 1C1| (Solute carrier family 21 member 14) (Blood-brain barrier-specific anion transporter 1) (BBB-specific anion transporter type 1) Length = 716 Score = 28.9 bits (63), Expect = 9.7 Identities = 16/51 (31%), Positives = 29/51 (56%) Frame = +2 Query: 32 HPPAYSLDPSISNQNLQSASPHPTPPWIKSATEKSRNKLGEKSQRKNPSQL 184 + P+ +L P+IS L+S+SP P +S KS+NK+ ++ + S + Sbjct: 144 YSPSSNLTPNISPCYLESSSPSP-----RSIVGKSQNKINDECEVDTSSSM 189
>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082| Length = 721 Score = 28.9 bits (63), Expect = 9.7 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Frame = +1 Query: 193 PMAANSNPSPSAGGDV-----PTPALPPVRLAAGQAATIQPSSP 309 P AA + P P+ G D+ PA PP A + PSSP Sbjct: 416 PAAAPAGPLPAYGADLRPPVTTPPATPPTPTGPISGAAVTPSSP 459
>VGLC_VZVD (P09256) Glycoprotein GPV| Length = 560 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Frame = +1 Query: 160 SAQKP*PAAQLPMAANSNPSP-----SAGGDVPTPALPPVRLAAGQ---AATIQPSSPRY 315 + +KP PA AA+ P P SA P PA+ P A+ + AA Q S P + Sbjct: 92 ATRKPDPAVAPTSAASRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAANTQHSQPPF 151 Query: 316 FFSSL 330 + ++ Sbjct: 152 LYENI 156
>PRP5_NEUCR (Q7SH33) Pre-mRNA-processing ATP-dependent RNA helicase prp-5 (EC| 3.6.1.-) Length = 1194 Score = 28.9 bits (63), Expect = 9.7 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Frame = +1 Query: 178 PAAQLPMAANSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLA--GKDASS 351 PA+ P +P A P A PVRL + ++ +P +S+A GK A+S Sbjct: 244 PASPAPYVGKFDPKAIARNAKPARASSPVRLGDVKLGDVKVGAPVAAAASIAGQGKGAAS 303 Query: 352 HHRRI-----AIAVDLSDESAFAVRWAVQNYLRPGDAVVL---LHVRPTSVLYGADWGSI 507 + I+ ++SA A++ + + GD ++ L P L AD Sbjct: 304 GKAGLLQTGRPISTFGFNKSADALKTTAKRKIDMGDEEIIKRKLVKLPDLALENAD---- 359 Query: 508 PVSVADDD-AEDA 543 ADDD AEDA Sbjct: 360 DTPYADDDVAEDA 372
>CN032_BOVIN (Q5E9L3) Protein C14orf32 homolog| Length = 240 Score = 28.9 bits (63), Expect = 9.7 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Frame = +1 Query: 178 PAAQLPMAANSNPSPSAGGDVPT---PALPPVRLAAGQAATIQPSSP 309 PA + ++ PSP G PT P++PP G A PS P Sbjct: 47 PAVPSGLPPSATPSPVPFGPTPTGMYPSVPPTGPPPGPPAPFPPSGP 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,017,924 Number of Sequences: 219361 Number of extensions: 1005286 Number of successful extensions: 6012 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 5199 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5953 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
