ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart45a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YAT9_SCHPO (Q10154) Hypothetical protein C1D4.09c in chromosome I 33 0.36

>YAT9_SCHPO (Q10154) Hypothetical protein C1D4.09c in chromosome I|
          Length = 240

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +3

Query: 402 LAKKPDKADP------NEARLSRFTCCALSGEPLAPPAVVDRLGNLF 524
           L K+P K  P         + S+F+ CA++ EPL PP V   LG L+
Sbjct: 14  LVKEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPPIVSCGLGKLY 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,747,274
Number of Sequences: 219361
Number of extensions: 277853
Number of successful extensions: 1094
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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