Clone Name | bart44h06 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | HAND1_XENLA (O73615) Heart- and neural crest derivatives-express... | 32 | 0.99 | 2 | BGS4_SCHPO (O74475) 1,3-beta-glucan synthase component bgs4 (EC ... | 31 | 2.9 | 3 | RL32_THEAC (Q9HIS4) 50S ribosomal protein L32e | 29 | 8.4 | 4 | CSMC_CHLVI (Q46466) Chlorosome protein C (14 kDa chlorosome prot... | 29 | 8.4 | 5 | GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoa... | 29 | 8.4 |
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>HAND1_XENLA (O73615) Heart- and neural crest derivatives-expressed protein 1| (Extraembryonic tissues, heart, autonomic nervous system and neural crest derivatives-expressed protein 1) (eHAND) Length = 197 Score = 32.3 bits (72), Expect = 0.99 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%) Frame = +3 Query: 309 PYVSGPAAGSVPPPKNTMDSVKDVLGKMGKRFG----EAARKTENITGNFWQHLKTGPSI 476 PY P G+V P T ++++ GK+G+R G + R+TE+I F + + P++ Sbjct: 53 PY--SPEYGAVVGPSQTSGRIENLGGKLGRRKGAPPKKERRRTESINSAFAELRECIPNV 110 Query: 477 -ADAAMGRVSQITKVIAEGGY 536 AD + ++ + + GY Sbjct: 111 PADTKLSKIKTLRLATSYIGY 131
>BGS4_SCHPO (O74475) 1,3-beta-glucan synthase component bgs4 (EC 2.4.1.34)| (1,3-beta-D-glucan-UDP glucosyltransferase) Length = 1955 Score = 30.8 bits (68), Expect = 2.9 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 12/75 (16%) Frame = -1 Query: 520 MTLVIWETLPIAA-----------SAILGPVFR-CCQKFPVMFSVLRAASPNLFPIFPST 377 + LVI +PIAA + LGP F CC+KFP +F AA + IF Sbjct: 1675 LRLVIISLIPIAAGFGMSGFFGGMACCLGPAFGLCCKKFPSIF----AAIAHTIQIFIFI 1730 Query: 376 SFTESMVFLGGGTEP 332 + E FL G + P Sbjct: 1731 AIFEVCWFLDGWSLP 1745
>RL32_THEAC (Q9HIS4) 50S ribosomal protein L32e| Length = 130 Score = 29.3 bits (64), Expect = 8.4 Identities = 15/52 (28%), Positives = 22/52 (42%) Frame = +3 Query: 396 KRFGEAARKTENITGNFWQHLKTGPSIADAAMGRVSQITKVIAEGGYEKIFH 551 K+ G+A RK +HL P + DA S + + G YE + H Sbjct: 35 KKLGDAWRKPRGKHSKLREHLARRPPVVDAGFRSPSAVRGMHPSGYYEVLIH 86
>CSMC_CHLVI (Q46466) Chlorosome protein C (14 kDa chlorosome protein)| Length = 139 Score = 29.3 bits (64), Expect = 8.4 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = +3 Query: 366 SVKDVLGKMGKRFGEAARKTENITGNFWQHL-KTGPSIADA 485 +VKDV G + +A R EN+TGN + + G S +DA Sbjct: 84 TVKDVSRSAGDLYNDAVRNVENVTGNAAKAVGDAGSSASDA 124
>GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoantigen| golgin-67) (88 kDa Golgi protein) (Gm88 autoantigen) Length = 460 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 8/44 (18%) Frame = +2 Query: 356 HHGLGEGRAGEDGEEVRRGRTQDG--------EHHRKLLAAPEN 463 HH G G+ GE+GE G DG E H K LAA +N Sbjct: 330 HHQAGPGQGGEEGEAA--GAAGDGVAACGSYNEGHGKFLAAAQN 371 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,690,779 Number of Sequences: 219361 Number of extensions: 1000861 Number of successful extensions: 3702 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3596 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3702 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)