ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OGFR_HUMAN (Q9NZT2) Opioid growth factor receptor (OGFr) (Zeta-t... 31 2.8
2PRRT1_HUMAN (Q99946) Proline-rich transmembrane protein 1 30 3.6
3PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2... 30 3.6
4PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1 30 6.1
5SEMG1_SAGOE (O77733) Semenogelin-1 precursor (Semenogelin I) (SGI) 29 8.0
6DNAA_PSEAE (Q9I7C5) Chromosomal replication initiator protein dnaA 29 8.0
7TIE1_BOVIN (Q06805) Tyrosine-protein kinase receptor Tie-1 precu... 29 8.0

>OGFR_HUMAN (Q9NZT2) Opioid growth factor receptor (OGFr) (Zeta-type opioid|
           receptor) (7-60 protein)
          Length = 677

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 448 AGKSRSGMPTQVRLRAEPPAGAPSAPLQTPMASPVAGP 335
           AG S +G+      R  P  G P +P +TP  SP AGP
Sbjct: 493 AGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSP-AGP 529



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>PRRT1_HUMAN (Q99946) Proline-rich transmembrane protein 1|
          Length = 306

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 436 RSGMPTQVRLRAEPPAGAPSAPLQTPMASPVAGP 335
           +SG+P  V   + PP  AP  P + P   P A P
Sbjct: 5   KSGLPDSVPHTSPPPYNAPQPPAEPPAPPPQAAP 38



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>PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2|
           (Retina-derived POU-domain factor 1) (RPF-1)
          Length = 684

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
 Frame = -2

Query: 528 APKAQSGQERSHNHNQ--------ASDPPRKPKHS 448
           AP+ Q  Q  SH+HNQ        +S PP+KP  S
Sbjct: 238 APQPQQHQPHSHSHNQNQPSPTQQSSSPPQKPSQS 272



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>PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1|
          Length = 306

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 436 RSGMPTQVRLRAEPPAGAPSAPLQTPMASPVAGP 335
           +SG+P  V   + PP  AP  P + P+  P   P
Sbjct: 5   KSGLPDSVPHTSPPPYNAPQPPAEPPIPPPQTAP 38



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>SEMG1_SAGOE (O77733) Semenogelin-1 precursor (Semenogelin I) (SGI)|
          Length = 615

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 498 SHNHNQASDPPRKPKHSQERADRACQLKCASA----PNH 394
           S N NQ  +P +  +H Q+  +R+CQ  C+S     PNH
Sbjct: 254 SKNQNQTRNPNQDQEHGQKAHNRSCQ--CSSTEERRPNH 290



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>DNAA_PSEAE (Q9I7C5) Chromosomal replication initiator protein dnaA|
          Length = 514

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 427 MPTQVRLRAEPPAGAPSAPLQTPMASPVAGP 335
           +P+Q  +   PP   P AP+Q   A+PV  P
Sbjct: 91  VPSQTHVAPPPPVAPPPAPVQPVSAAPVVVP 121



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>TIE1_BOVIN (Q06805) Tyrosine-protein kinase receptor Tie-1 precursor (EC|
           2.7.10.1)
          Length = 1136

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 347 GAGHRGLQRGGRCAGWWFGAEAHLSWHARSALSCECF 457
           G+G RG Q    CA   FGA+ HL    ++  +C+ F
Sbjct: 292 GSGWRGSQCQEACAPGRFGADCHLQCQCQNGGTCDRF 328


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,563,606
Number of Sequences: 219361
Number of extensions: 589731
Number of successful extensions: 3059
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3049
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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