ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC148759.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.12
2gb|AC136378.4| Oryza sativa (japonica cultivar-group) chromosome... 46 0.12
3ref|XM_721858.1| Plasmodium yoelii yoelii str. 17XNL 34 kDa phos... 46 0.12
4emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 46 0.12
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
8dbj|AP005556.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
9dbj|AK109823.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
10dbj|AK106108.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
11dbj|AK106066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
12dbj|AK066668.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
13dbj|AK063279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.12
15emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete ch... 44 0.49
16emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4,... 44 0.49
17gb|AY549206.1| Streptomyces tubercidicus ferredoxin reductase (f... 42 1.9
18ref|NM_186151.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.9
19gb|AE017139.1| Yersinia pestis biovar Medievalis str. 91001 sect... 42 1.9
20gb|AE009952.1| Yersinia pestis KIM, complete genome 42 1.9
21emb|AL512410.14| Human DNA sequence from clone RP11-100E6 on chr... 42 1.9
22emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 42 1.9
23emb|AJ414159.1| Yersinia pestis strain CO92 complete genome; seg... 42 1.9
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
25dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
26gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
27ref|XM_550346.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.7
28ref|XM_483463.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.7
29ref|XM_471138.1| Oryza sativa (japonica cultivar-group), predic... 40 7.7
30gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
31ref|XM_364510.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 7.7
32gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genom... 40 7.7
33ref|XM_613058.2| PREDICTED: Bos taurus similar to Golgi autoanti... 40 7.7
34gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
35gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.7
36emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete ch... 40 7.7
37gb|AC123874.4| Mus musculus BAC clone RP23-265M17 from 6, comple... 40 7.7
38gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 7.7
39emb|BX842608.1|OSJN00298 Oryza sativa genomic DNA, chromosome 4,... 40 7.7
40emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genom... 40 7.7
41emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4,... 40 7.7
42gb|AE006464.1| Homo sapiens 16p13.3 sequence section 3 of 8 40 7.7
43gb|AC149395.2| Phakopsora pachyrhizi clone JGIAFNA-61H11, comple... 40 7.7
44dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
45dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
46dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
47dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
48dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
49dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
50dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
51dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.7
52dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
53dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
54dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
55dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
56dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
57dbj|AK119230.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
58dbj|AK107172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
59emb|AJ337925.1|HSA337925 Homo sapiens genomic sequence surroundi... 40 7.7
60emb|AJ338470.1|HSA338470 Homo sapiens genomic sequence surroundi... 40 7.7
61dbj|AK105710.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
62emb|AJ341036.1|HSA341036 Homo sapiens genomic sequence surroundi... 40 7.7
63dbj|AK066755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
64gb|AC155253.1| Mus musculus BAC clone RP24-172G9 from 17, comple... 40 7.7
65dbj|AK063078.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
66emb|CR381623.33| Zebrafish DNA sequence from clone DKEY-276G15 i... 40 7.7
67gb|AC174800.2| Mus musculus BAC clone CH36-125B10 from chromosom... 40 7.7
68dbj|AP001120.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.7
69gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.7
70gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 40 7.7
71gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
72emb|AL928747.3|CNS08CBK Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.7
73emb|Z97653.14|HS380A1 Human DNA sequence from clone LA16c-380A1 ... 40 7.7
74gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7

>gb|AC148759.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0030K09, complete sequence
          Length = 143355

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 26    caggggcgacacgggcggcgacc 48
             |||||||||||||||||||||||
Sbjct: 85777 caggggcgacacgggcggcgacc 85755



to top

>gb|AC136378.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0047D03, complete sequence
          Length = 126165

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 26   caggggcgacacgggcggcgacc 48
            |||||||||||||||||||||||
Sbjct: 3164 caggggcgacacgggcggcgacc 3142



to top

>ref|XM_721858.1| Plasmodium yoelii yoelii str. 17XNL 34 kDa phosphoprotein (PY00792)
           partial mRNA
          Length = 772

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 270 tgggcggcctaggaggcgtgggcggcctgggaggc 304
           ||||||||||||||||  |||||||| ||||||||
Sbjct: 432 tgggcggcctaggaggtatgggcggcatgggaggc 466



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 270 tgggcggcctaggaggcgtgggcggcctgggagg 303
           |||| |||||||||||| |||||||| |||||||
Sbjct: 459 tgggaggcctaggaggcatgggcggcatgggagg 492



to top

>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
             complete sequence
          Length = 179798

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 26    caggggcgacacgggcggcgacc 48
             |||||||||||||||||||||||
Sbjct: 17658 caggggcgacacgggcggcgacc 17680



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 26       caggggcgacacgggcggcgacc 48
                |||||||||||||||||||||||
Sbjct: 30750236 caggggcgacacgggcggcgacc 30750258



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 27      aggggcgacacgggcggcgacc 48
               ||||||||||||||||||||||
Sbjct: 6957554 aggggcgacacgggcggcgacc 6957533



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 163     ccgcggcggcgtcctccacgagtt 186
               |||||||||||| |||||||||||
Sbjct: 1779496 ccgcggcggcgtgctccacgagtt 1779473



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 26       caggggcgacacgggcggcgacc 48
                |||||||||||||||||||||||
Sbjct: 16636821 caggggcgacacgggcggcgacc 16636799



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 26       caggggcgacacgggcggcgacc 48
                |||||||||||||||||||||||
Sbjct: 13065331 caggggcgacacgggcggcgacc 13065353



to top

>dbj|AP005556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1118_F11
          Length = 113866

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 26    caggggcgacacgggcggcgacc 48
             |||||||||||||||||||||||
Sbjct: 92209 caggggcgacacgggcggcgacc 92231



to top

>dbj|AK109823.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A11,
          full insert sequence
          Length = 1757

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 caggggcgacacgggcggcgacc 48
          |||||||||||||||||||||||
Sbjct: 34 caggggcgacacgggcggcgacc 56



to top

>dbj|AK106108.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D03,
          full insert sequence
          Length = 1379

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 caggggcgacacgggcggcgacc 48
          |||||||||||||||||||||||
Sbjct: 16 caggggcgacacgggcggcgacc 38



to top

>dbj|AK106066.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G10,
          full insert sequence
          Length = 1138

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 caggggcgacacgggcggcgacc 48
          |||||||||||||||||||||||
Sbjct: 36 caggggcgacacgggcggcgacc 58



to top

>dbj|AK066668.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073D21,
          full insert sequence
          Length = 2007

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 caggggcgacacgggcggcgacc 48
          |||||||||||||||||||||||
Sbjct: 60 caggggcgacacgggcggcgacc 82



to top

>dbj|AK063279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C08,
          full insert sequence
          Length = 1532

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 caggggcgacacgggcggcgacc 48
          |||||||||||||||||||||||
Sbjct: 40 caggggcgacacgggcggcgacc 62



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 26       caggggcgacacgggcggcgacc 48
                |||||||||||||||||||||||
Sbjct: 16715873 caggggcgacacgggcggcgacc 16715851



to top

>emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete chromosome; segment 8/12
          Length = 294800

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 89    cctcgccgtcgccggtgcctcccgtgagca 118
             ||||||||||||||||||| |||| |||||
Sbjct: 77369 cctcgccgtcgccggtgccgcccgagagca 77398



to top

>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05,
              complete sequence
          Length = 149134

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 27     aggggcgacacgggcggcgacc 48
              ||||||||||||||||||||||
Sbjct: 120425 aggggcgacacgggcggcgacc 120404



to top

>gb|AY549206.1| Streptomyces tubercidicus ferredoxin reductase (fre12) gene,
           complete cds
          Length = 1314

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 216 gagggcgacggccggcgcgtc 236
           |||||||||||||||||||||
Sbjct: 781 gagggcgacggccggcgcgtc 801



to top

>ref|NM_186151.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1707

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 78  cctcctcctcccctcgccgtcgccg 102
           ||||||||||| |||||||||||||
Sbjct: 252 cctcctcctcctctcgccgtcgccg 228



to top

>gb|AE017139.1| Yersinia pestis biovar Medievalis str. 91001 section 13 of 16 of the
              complete genome
          Length = 294253

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 132    gctggcggcggcggggccggt 152
              |||||||||||||||||||||
Sbjct: 145039 gctggcggcggcggggccggt 145019



to top

>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 132    gctggcggcggcggggccggt 152
              |||||||||||||||||||||
Sbjct: 489099 gctggcggcggcggggccggt 489079



to top

>emb|AL512410.14| Human DNA sequence from clone RP11-100E6 on chromosome 6, complete
             sequence
          Length = 160891

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 469   tggatctgaggcttggttgtg 489
             |||||||||||||||||||||
Sbjct: 26860 tggatctgaggcttggttgtg 26840



to top

>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 132    gctggcggcggcggggccggt 152
              |||||||||||||||||||||
Sbjct: 287648 gctggcggcggcggggccggt 287628



to top

>emb|AJ414159.1| Yersinia pestis strain CO92 complete genome; segment 19/20
          Length = 199050

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 132  gctggcggcggcggggccggt 152
            |||||||||||||||||||||
Sbjct: 5615 gctggcggcggcggggccggt 5635



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 78     cctcctcctcccctcgccgtcgccg 102
              ||||||||||| |||||||||||||
Sbjct: 443750 cctcctcctcctctcgccgtcgccg 443774



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 26       caggggcgacacgggcggcgaccc 49
                ||||||||||||||| ||||||||
Sbjct: 21466852 caggggcgacacgggaggcgaccc 21466875



to top

>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 78    cctcctcctcccctcgccgtcgccg 102
             ||||||||||| |||||||||||||
Sbjct: 45914 cctcctcctcctctcgccgtcgccg 45938



to top

>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13,
              complete sequence
          Length = 148011

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     ccccaggggcgacacgggcggcga 46
              ||||||||||||| ||||||||||
Sbjct: 100527 ccccaggggcgacgcgggcggcga 100550



to top

>ref|XM_550346.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 976

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 79  ctcctcctcccctcgccgtcgccg 102
           |||||||||||||||||| |||||
Sbjct: 75  ctcctcctcccctcgccgccgccg 52



to top

>ref|XM_483463.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 163 ccgcggcggcgtcctccacg 182
           ||||||||||||||||||||
Sbjct: 576 ccgcggcggcgtcctccacg 595



to top

>ref|XM_471138.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1416

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 163 ccgcggcggcgtcctccacgagtt 186
           |||||||||||| |||||||||||
Sbjct: 564 ccgcggcggcgtgctccacgagtt 587



to top

>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07,
             complete sequence
          Length = 164477

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    ctcctcctcccctcgccgtcgccg 102
             |||||||||| |||||||||||||
Sbjct: 99428 ctcctcctccgctcgccgtcgccg 99451



to top

>ref|XM_364510.1| Magnaporthe grisea 70-15 hypothetical protein (MG09416.4) partial
           mRNA
          Length = 1152

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 29  gggcgacacgggcggcgaccccga 52
           |||| |||||||||||||||||||
Sbjct: 846 gggccacacgggcggcgaccccga 869



to top

>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
             sequence
          Length = 145590

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 24    cccaggggcgacacgggcggcgac 47
             |||||||||||||||| |||||||
Sbjct: 95451 cccaggggcgacacggacggcgac 95428



to top

>ref|XM_613058.2| PREDICTED: Bos taurus similar to Golgi autoantigen, golgin subfamily
            a, 3 (LOC533600), mRNA
          Length = 4586

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 434  tctgctctttcctgcgagtgcttc 457
            |||||| |||||||||||||||||
Sbjct: 3722 tctgctatttcctgcgagtgcttc 3699



to top

>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0079L11, complete sequence
          Length = 124104

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    caggggcgacacgggcggcgaccc 49
             ||||||||||||||| ||||||||
Sbjct: 84151 caggggcgacacgggaggcgaccc 84128



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 24       cccaggggcgacacgggcggcgac 47
                |||||||||||||||| |||||||
Sbjct: 22500204 cccaggggcgacacggacggcgac 22500181



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     ccccaggggcgacacgggcggcga 46
              ||||||||||||| ||||||||||
Sbjct: 945330 ccccaggggcgacgcgggcggcga 945353



to top

>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12
          Length = 329100

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   ggcgacggccggcgcgtcgt 238
             ||||||||||||||||||||
Sbjct: 81734 ggcgacggccggcgcgtcgt 81753



to top

>gb|AC123874.4| Mus musculus BAC clone RP23-265M17 from 6, complete sequence
          Length = 193712

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 67     gcgccccccaccctcctcctcccc 90
              |||||||||||||||| |||||||
Sbjct: 147100 gcgccccccaccctccacctcccc 147077



to top

>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 124     cgcgtggagctggcggcggcggggccgg 151
               |||| ||||||||||||||||| |||||
Sbjct: 2034716 cgcgcggagctggcggcggcggcgccgg 2034689



to top

>emb|BX842608.1|OSJN00298 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1340F09, complete
              sequence
          Length = 149449

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 163    ccgcggcggcgtcctccacgagtt 186
              |||||||||||| |||||||||||
Sbjct: 122448 ccgcggcggcgtgctccacgagtt 122425



to top

>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16
          Length = 349981

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   tggagctggcggcggcgggg 147
             ||||||||||||||||||||
Sbjct: 34924 tggagctggcggcggcgggg 34943



to top

>emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H09,
             complete sequence
          Length = 155672

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   ccgcggcggcgtcctccacgagtt 186
             |||||||||||| |||||||||||
Sbjct: 74763 ccgcggcggcgtgctccacgagtt 74740



to top

>gb|AE006464.1| Homo sapiens 16p13.3 sequence section 3 of 8
          Length = 256073

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     ccccccaccctcctcctccc 89
              ||||||||||||||||||||
Sbjct: 177252 ccccccaccctcctcctccc 177271



to top

>gb|AC149395.2| Phakopsora pachyrhizi clone JGIAFNA-61H11, complete sequence
          Length = 30962

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    ccccccaccctcctcctccc 89
             ||||||||||||||||||||
Sbjct: 11624 ccccccaccctcctcctccc 11605



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 23       ccccaggggcgacacgggcggcga 46
                ||||||||||||| ||||||||||
Sbjct: 13886403 ccccaggggcgacgcgggcggcga 13886426



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 163      ccgcggcggcgtcctccacg 182
                ||||||||||||||||||||
Sbjct: 26349487 ccgcggcggcgtcctccacg 26349468



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 79      ctcctcctcccctcgccgtcgccg 102
               |||||||||||||||||| |||||
Sbjct: 3157348 ctcctcctcccctcgccgccgccg 3157371



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 26      caggggcgacacgggcggcgaccc 49
               ||||||||||||||| ||||||||
Sbjct: 1422489 caggggcgacacgggaggcgaccc 1422466



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     ctcctcctcccctcgccgtcgccg 102
              |||||||||| |||||||||||||
Sbjct: 895004 ctcctcctccgctcgccgtcgccg 895027



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 24       cccaggggcgacacgggcggcgac 47
                |||||||||||||||| |||||||
Sbjct: 22493233 cccaggggcgacacggacggcgac 22493210



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     ccccaggggcgacacgggcggcga 46
              ||||||||||||| ||||||||||
Sbjct: 945328 ccccaggggcgacgcgggcggcga 945351



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 23       ccccaggggcgacacgggcggcga 46
                ||||||||||||| ||||||||||
Sbjct: 22386883 ccccaggggcgacgcgggcggcga 22386906



to top

>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0681F10
          Length = 170371

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     ctcctcctcccctcgccgtcgccg 102
              |||||||||||||||||| |||||
Sbjct: 111533 ctcctcctcccctcgccgccgccg 111556



to top

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    ccgcggcggcgtcctccacg 182
              ||||||||||||||||||||
Sbjct: 372294 ccgcggcggcgtcctccacg 372275



to top

>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0672C09
          Length = 145655

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    ccccaggggcgacacgggcggcga 46
             ||||||||||||| ||||||||||
Sbjct: 11021 ccccaggggcgacgcgggcggcga 11044



to top

>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0013G02
          Length = 163419

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    ccccaggggcgacacgggcggcga 46
             ||||||||||||| ||||||||||
Sbjct: 84153 ccccaggggcgacgcgggcggcga 84176



to top

>dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1729_E01
          Length = 155527

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 26     caggggcgacacgggcggcgaccc 49
              ||||||||||||||| ||||||||
Sbjct: 110908 caggggcgacacgggaggcgaccc 110931



to top

>dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1582_D10
          Length = 103475

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 26   caggggcgacacgggcggcgaccc 49
            ||||||||||||||| ||||||||
Sbjct: 4636 caggggcgacacgggaggcgaccc 4659



to top

>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1770_H02
          Length = 170648

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ccgcggcggcgtcctccacg 182
             ||||||||||||||||||||
Sbjct: 79068 ccgcggcggcgtcctccacg 79049



to top

>dbj|AK119230.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-B11, full
           insert sequence
          Length = 693

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 26  caggggcgacacgggcggcgaccc 49
           ||||||||||||||| ||||||||
Sbjct: 168 caggggcgacacgggaggcgaccc 145



to top

>dbj|AK107172.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G04, full
           insert sequence
          Length = 1544

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 163 ccgcggcggcgtcctccacgagtt 186
           |||||||||||| |||||||||||
Sbjct: 605 ccgcggcggcgtgctccacgagtt 628



to top

>emb|AJ337925.1|HSA337925 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-FG17R
          Length = 753

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  ccccccaccctcctcctccc 89
           ||||||||||||||||||||
Sbjct: 337 ccccccaccctcctcctccc 318



to top

>emb|AJ338470.1|HSA338470 Homo sapiens genomic sequence surrounding NotI site, clone NR1-212R
          Length = 725

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  ccccccaccctcctcctccc 89
           ||||||||||||||||||||
Sbjct: 337 ccccccaccctcctcctccc 318



to top

>dbj|AK105710.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E09,
          full insert sequence
          Length = 1225

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 26 caggggcgacacgggcggcgaccc 49
          ||||||||||||||| ||||||||
Sbjct: 55 caggggcgacacgggaggcgaccc 78



to top

>emb|AJ341036.1|HSA341036 Homo sapiens genomic sequence surrounding NotI site, clone NR5-KD5C
          Length = 665

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  ccccccaccctcctcctccc 89
           ||||||||||||||||||||
Sbjct: 337 ccccccaccctcctcctccc 318



to top

>dbj|AK066755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075C21, full
           insert sequence
          Length = 976

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 79  ctcctcctcccctcgccgtcgccg 102
           |||||||||||||||||| |||||
Sbjct: 74  ctcctcctcccctcgccgccgccg 51



to top

>gb|AC155253.1| Mus musculus BAC clone RP24-172G9 from 17, complete sequence
          Length = 160193

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    cccaccctcctcctcccctc 92
             ||||||||||||||||||||
Sbjct: 37389 cccaccctcctcctcccctc 37408



to top

>dbj|AK063078.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H11, full
           insert sequence
          Length = 693

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 26  caggggcgacacgggcggcgaccc 49
           ||||||||||||||| ||||||||
Sbjct: 168 caggggcgacacgggaggcgaccc 145



to top

>emb|CR381623.33| Zebrafish DNA sequence from clone DKEY-276G15 in linkage group 1,
             complete sequence
          Length = 159400

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    cccaccctcctcctcccctc 92
             ||||||||||||||||||||
Sbjct: 44331 cccaccctcctcctcccctc 44312



to top

>gb|AC174800.2| Mus musculus BAC clone CH36-125B10 from chromosome 17, complete
             sequence
          Length = 178741

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    cccaccctcctcctcccctc 92
             ||||||||||||||||||||
Sbjct: 66813 cccaccctcctcctcccctc 66832



to top

>dbj|AP001120.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-677O4, complete
              sequence
          Length = 181123

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    tggcctgactgggcttttgg 525
              ||||||||||||||||||||
Sbjct: 155533 tggcctgactgggcttttgg 155514



to top

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 221     cgacggccggcgcgtcgtcg 240
               ||||||||||||||||||||
Sbjct: 2723152 cgacggccggcgcgtcgtcg 2723171



to top

>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    gctgctcggctgctgcgacg 328
              ||||||||||||||||||||
Sbjct: 337802 gctgctcggctgctgcgacg 337821



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 23       ccccaggggcgacacgggcggcga 46
                ||||||||||||| ||||||||||
Sbjct: 13840683 ccccaggggcgacgcgggcggcga 13840706



to top

>emb|AL928747.3|CNS08CBK Oryza sativa chromosome 12, . BAC OSJNBa0017A21 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144552

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    ccccaggggcgacacgggcggcga 46
             ||||||||||||| ||||||||||
Sbjct: 23031 ccccaggggcgacgcgggcggcga 23054



to top

>emb|Z97653.14|HS380A1 Human DNA sequence from clone LA16c-380A1 on chromosome 16, complete
             sequence
          Length = 25042

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    ccccccaccctcctcctccc 89
             ||||||||||||||||||||
Sbjct: 11627 ccccccaccctcctcctccc 11646



to top

>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12,
             complete sequence
          Length = 144455

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    caggggcgacacgggcggcgaccc 49
             ||||||||||||||| ||||||||
Sbjct: 16569 caggggcgacacgggaggcgaccc 16546


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,031,122
Number of Sequences: 3902068
Number of extensions: 5031122
Number of successful extensions: 117419
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114864
Number of HSP's gapped (non-prelim): 2555
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top