>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger|
            receptor expressed by endothelial cells 2 protein)
            (SREC-II)
          Length = 833

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
 Frame = -2

Query: 326  PTEA---PRSEPACPSRLPISTKEATATAGRSTPPPPTKGTAGSLMSKEMXXXXXXXXXX 156
            PT+A   PRS P   S L    ++ T + GR+  PPP +    S++              
Sbjct: 728  PTDAGGPPRSAPEAASMLAAELRDKTRSLGRAEKPPPPQKAKRSVLPAATVRTASASEAS 787

Query: 155  XXXXGCTWRRRPETPCASL*VRSCPCRCMPSSASREISMDYGESRDAG 12
                       PETP      +  P +  P   SRE +   GE   AG
Sbjct: 788  GSEKAAASAPAPETP-----RKKTPIQKPPRKKSREAA---GEPSRAG 827

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 347  DSCCT--APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPT 222
            D C T  +PPT  P   P   + LP +T  +  T   +TPPP T
Sbjct: 1393 DKCITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTT 1436



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 332  APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPT 222
            +PP   P + PA  + LP +T  +  T   +TPPP T
Sbjct: 1501 SPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTT 1537



 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 332  APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPT 222
            +PPT  P + P   + LP +T  +      +TPPP T
Sbjct: 1619 SPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT 1655



 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 332  APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPT 222
            +PPT  P + P   + LP +T  +      +TPPP T
Sbjct: 1540 SPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT 1576

>DDEF1_BOVIN (O97902) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 1129

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 329 PPTEAPRSEPACPSRLPISTK----EATATAGRSTPPPP 225
           PP  A +  P  PS LP+ST+     +T +  RS PPPP
Sbjct: 797 PPRNATKGPPGPPSTLPLSTQTSSGSSTLSKKRSPPPPP 835

>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1691

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGR--STPPPPTKGTAGSLMS 195
           AP  +AP S P   S+ P  T+ ++ +  R   TPPPP K +  S  S
Sbjct: 169 APSKQAPASTPKSASKKPTETRTSSRSTRRRSPTPPPPPKNSTRSRRS 216

>DDEF1_HUMAN (Q9ULH1) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 956

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
 Frame = -2

Query: 335 TAPPTEAPRSEP--------ACPSRLPISTK--EATATAGRSTPPPPTKG 216
           T+P TEAP   P          PS LP+ST+    ++T  +  PPPP  G
Sbjct: 611 TSPTTEAPPLPPRNAGKGPTGPPSTLPLSTQTSSGSSTLSKKRPPPPPPG 660

>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1|
           kinase) (SAD1A)
          Length = 794

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 326 PTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKG 216
           P  +PRS    P   P+ T  A+ T    T PPP+ G
Sbjct: 521 PPGSPRSSGGTPLHSPLHTPRASPTGTPGTTPPPSPG 557

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
 Frame = -2

Query: 326 PTEAPRSEPACPSRLPISTKEATATAGRST-------PPPPTKGTAG 207
           P   P   PA PS  P     +T ++G ST       PPPP  G AG
Sbjct: 141 PGPTPTPPPAVPSTAPGPPPPSTPSSGVSTTPPQTGGPPPPPAGGAG 187

>SPG7_DICDI (P22698) Spore germination protein 270-11|
          Length = 532

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 287 RLPISTKEATATAGRSTPPPPTKGTAGS 204
           ++PI+T  +T T G STP  PT  T+ S
Sbjct: 109 QIPITTTSSTTTDGSSTPSTPTSTTSAS 136

>VGLD_PRVRI (P07645) Protein gp50|
          Length = 402

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = -2

Query: 329 PPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGT 213
           P  E   + PA P RLP       A  GR TP PP   T
Sbjct: 279 PKPEPAPATPAPPDRLPEPATRDHAAGGRPTPRPPRPET 317

>DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 1147

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 329 PPTEAPRSEPACPSRLPISTK--EATATAGRSTPPPPTKG 216
           PP  A +     PS LP+ T+    ++T  +  PPPP  G
Sbjct: 809 PPRNAGKGPTGPPSTLPLGTQTSSGSSTLSKKRPPPPPPG 848

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 347  DSCCTAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPP 228
            +SCC  PP   P S+P   SR+P+S +  +++    TP P
Sbjct: 2118 ESCCALPPRSLP-SDPF--SRVPVSPQSQSSSQSPLTPRP 2154

>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
            (Trithorax homolog 2)
          Length = 2715

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
 Frame = -2

Query: 332  APPTEAP------RSEPACPSRLPISTKEATATAGRSTPPPP 225
            APP   P       S PA P R  I  K  +  +GRS P PP
Sbjct: 2252 APPPPPPPLTLVLSSGPASPPRQAIRVKRVSTFSGRSPPAPP 2293

>FAS2_PENPA (P15368) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:|
           Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase
           (EC 1.1.1.100) (Beta-ketoacyl reductase);
           3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)
           (Beta-ketoacyl synth
          Length = 1857

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 329 PPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTAGSL 201
           P  E P +    PS  P +   A A A  + PPPP+ G A S+
Sbjct: 94  PVEEEPEATEPAPSATPAAP--AAAPAAGAPPPPPSAGPAASV 134

>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor|
          Length = 307

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/77 (24%), Positives = 29/77 (37%)
 Frame = -2

Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTAGSLMSKEMXXXXXXXXXXX 153
           APPT+   ++P C +  P + K+ T T    T P  TK T     +K             
Sbjct: 56  APPTQQSTTQPPCTTSKPTTPKQ-TTTQLPCTTPTTTKATT----TKPTTTKATTTKATT 110

Query: 152 XXXGCTWRRRPETPCAS 102
                T +   + PC +
Sbjct: 111 TKPTTTKQTTTQLPCTT 127

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -2

Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPP 225
           APP+  P S PA PS  P S K        S PPPP
Sbjct: 240 APPSPVPPS-PAPPSPAPPSPKPPAPPPPPSPPPPP 274

>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)|
            (153 kDa nucleoporin)
          Length = 1468

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 308  SEPACPSRLPISTKEATATAGRSTPPPPTKGTAGS 204
            S+P  PS   IS+  A  +AG    PPPT GT  S
Sbjct: 1327 SQPNPPSFGSISSSTALFSAGSQPVPPPTFGTVSS 1361

>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,|
            muscle-specific form (Alpha-NAC, muscle-specific form)
          Length = 2187

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 329  PPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGT--AGS 204
            PP+     + A P   P  + E   TA    PP P KG+  AGS
Sbjct: 1349 PPSPRKAPKTAAPKETPAPSPEGATTAPVQIPPSPRKGSKKAGS 1392

>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3|
          Length = 299

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTA 210
           APP   P   P   + +P +T+  T T     PPPP   TA
Sbjct: 151 APPPPPPAPPPT--TEIPTATETQTVTVTPPPPPPPATTTA 189

>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3|
          Length = 299

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTA 210
           APP   P   P   + +P +T+  T T     PPPP   TA
Sbjct: 151 APPPPPPAPPPT--TEIPTATETQTVTVTPPPPPPPATTTA 189

>VE7_BPV2 (P11303) Protein E7|
          Length = 127

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -2

Query: 344 SCCTAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKG 216
           S C   PT  P +  A   RLP      T   G STPP  + G
Sbjct: 23  SPCAGTPTRVPAAPDAPDFRLPCHFGRPTRKRGPSTPPLSSPG 65

>TIM13_ARATH (Q9XH48) Mitochondrial import inner membrane translocase subunit|
           Tim13
          Length = 87

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 353 CRDSCCTAPPTEAPRSEPACPSRLPISTKEATATAGRS 240
           C D C T P +    SE +C SR      EATA   RS
Sbjct: 45  CFDKCVTKPGSSLGGSESSCISRCVERYMEATAIISRS 82

>LIME1_MOUSE (Q9EQR5) Lck-interacting transmembrane adapter 1 (Lck-interacting|
           molecule)
          Length = 269

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 329 PPTEAPRSEPACPSRLPISTKEAT 258
           PP + PR+ PA P+  P ++ EAT
Sbjct: 113 PPRQLPRAPPAAPATAPSTSSEAT 136

>OVGP1_SHEEP (Q28542) Oviduct-specific glycoprotein precursor (Oviductal|
           glycoprotein) (Oviductin) (Estrogen-dependent oviduct
           protein) (Estrus-associated oviducal glycoprotein)
           (OEGP)
          Length = 539

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 335 TAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTK 219
           +A  T  PR E A P+R P+S+   TA     T  P  K
Sbjct: 439 SATMTTTPRGETATPTRTPLSSGRRTAAPEGKTESPGEK 477

>AIPL1_PANPA (Q95MN9) Aryl-hydrocarbon-interacting protein-like 1|
          Length = 384

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 335 TAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKG 216
           T PP ++    PA P   P +   A   A  +T PPP+ G
Sbjct: 340 TEPPAQSSTEPPAEPPPAPSAELSAGPPAETATEPPPSPG 379

>AIPL1_HUMAN (Q9NZN9) Aryl-hydrocarbon-interacting protein-like 1|
          Length = 384

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 335 TAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKG 216
           T PP ++    PA P   P +   A   A  +T PPP+ G
Sbjct: 340 TEPPAQSSTEPPAEPPTAPSAELSAGPPAEPATEPPPSPG 379

>NAS15_CAEEL (P55115) Zinc metalloproteinase nas-15 precursor (EC 3.4.24.21)|
           (Nematode astacin 15)
          Length = 571

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 341 CCTAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGT 213
           C   PPTE P + P   +  P+ T        RS  PP +  T
Sbjct: 471 CFKPPPTEIPDNRPTVVTTRPLVTLPPAVIRSRSPAPPVSTTT 513

>SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/SNF complex|
           component SNF5) (Transcription factor TYE4)
          Length = 905

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 335 TAPPTEAPRSEPACPSRL-PISTKEATATAGRSTPPPP 225
           T+PP +  +S P  P +  PI+ + AT     STPPPP
Sbjct: 70  TSPPPQTHQSPPPPPQQSQPIANQSAT-----STPPPP 102

>DAF_CAVPO (Q60401) Complement decay-accelerating factor precursor (CD55|
           antigen) [Contains: Complement decay-accelerating
           factor, GPI-anchored isoform]
          Length = 507

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 329 PPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTAG 207
           PPT   +S P  P + P +T     T    T  P T  TAG
Sbjct: 279 PPTCRVKSPPVIPPQKPTTTSAPGTTTTLPTQKPTTVNTAG 319

>FOR3_SCHPO (O94532) Formin-3|
          Length = 1461

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -2

Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTAGS 204
           +PP   P      P+  PI         G   PPPP  G AG+
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGA 773

>PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 478

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 326 PTEAPRSEPACPSRLP-ISTKEATATAGRSTPPPPTKGTA 210
           P   PR  P    + P   TK   ATA +STPPP T GTA
Sbjct: 375 PETRPRQVPPSARQDPGPGTKAPWATASQSTPPPST-GTA 413

>ATPBM_MAIZE (P19023) ATP synthase beta chain, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 553

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
 Frame = -2

Query: 332 APPTEAPRSEPACPS-------RLPISTKEATATAGRSTPPPPTKGTAGSLMSKE 189
           +P    PR+ P  PS       R       A A A  +TPPP T  T G  ++ E
Sbjct: 21  SPAAPRPRAPPHRPSPAGYLFNRAAAYASSAAAQAAPATPPPATGKTGGGKITDE 75

>NFASC_RAT (P97685) Neurofascin precursor|
          Length = 1240

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -2

Query: 308  SEPACPSRLPISTKEATATAGRSTPPPPTKGTAGSLMSKE 189
            S  A     P    EAT TA   T PP T GT G + S +
Sbjct: 908  SGEAATEESPTPPNEATPTAAPPTLPPTTVGTTGLVSSTD 947

>NFASC_MOUSE (Q810U3) Neurofascin precursor|
          Length = 1240

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -2

Query: 308  SEPACPSRLPISTKEATATAGRSTPPPPTKGTAGSLMSKE 189
            S  A     P    EAT TA   T PP T GT G + S +
Sbjct: 908  SGEAATEESPAPPNEATPTAAPPTLPPTTVGTTGLVSSTD 947


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,042,850
Number of Sequences: 219361
Number of extensions: 533295
Number of successful extensions: 3579
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 3078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3537
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)