Clone Name | bart44g11 |
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Clone Library Name | barley_pub |
>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) Length = 833 Score = 35.8 bits (81), Expect = 0.069 Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 3/108 (2%) Frame = -2 Query: 326 PTEA---PRSEPACPSRLPISTKEATATAGRSTPPPPTKGTAGSLMSKEMXXXXXXXXXX 156 PT+A PRS P S L ++ T + GR+ PPP + S++ Sbjct: 728 PTDAGGPPRSAPEAASMLAAELRDKTRSLGRAEKPPPPQKAKRSVLPAATVRTASASEAS 787 Query: 155 XXXXGCTWRRRPETPCASL*VRSCPCRCMPSSASREISMDYGESRDAG 12 PETP + P + P SRE + GE AG Sbjct: 788 GSEKAAASAPAPETP-----RKKTPIQKPPRKKSREAA---GEPSRAG 827
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 34.7 bits (78), Expect = 0.15 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -2 Query: 347 DSCCT--APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPT 222 D C T +PPT P P + LP +T + T +TPPP T Sbjct: 1393 DKCITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTT 1436 Score = 31.6 bits (70), Expect = 1.3 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -2 Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPT 222 +PP P + PA + LP +T + T +TPPP T Sbjct: 1501 SPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTT 1537 Score = 30.0 bits (66), Expect = 3.8 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -2 Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPT 222 +PPT P + P + LP +T + +TPPP T Sbjct: 1619 SPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT 1655 Score = 30.0 bits (66), Expect = 3.8 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -2 Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPT 222 +PPT P + P + LP +T + +TPPP T Sbjct: 1540 SPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT 1576
>DDEF1_BOVIN (O97902) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent| ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differe Length = 1129 Score = 34.7 bits (78), Expect = 0.15 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Frame = -2 Query: 329 PPTEAPRSEPACPSRLPISTK----EATATAGRSTPPPP 225 PP A + P PS LP+ST+ +T + RS PPPP Sbjct: 797 PPRNATKGPPGPPSTLPLSTQTSSGSSTLSKKRSPPPPP 835
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 33.9 bits (76), Expect = 0.26 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = -2 Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGR--STPPPPTKGTAGSLMS 195 AP +AP S P S+ P T+ ++ + R TPPPP K + S S Sbjct: 169 APSKQAPASTPKSASKKPTETRTSSRSTRRRSPTPPPPPKNSTRSRRS 216
>DDEF1_HUMAN (Q9ULH1) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent| ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differe Length = 956 Score = 32.3 bits (72), Expect = 0.77 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 10/50 (20%) Frame = -2 Query: 335 TAPPTEAPRSEP--------ACPSRLPISTK--EATATAGRSTPPPPTKG 216 T+P TEAP P PS LP+ST+ ++T + PPPP G Sbjct: 611 TSPTTEAPPLPPRNAGKGPTGPPSTLPLSTQTSSGSSTLSKKRPPPPPPG 660
>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1| kinase) (SAD1A) Length = 794 Score = 31.2 bits (69), Expect = 1.7 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -2 Query: 326 PTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKG 216 P +PRS P P+ T A+ T T PPP+ G Sbjct: 521 PPGSPRSSGGTPLHSPLHTPRASPTGTPGTTPPPSPG 557
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 30.4 bits (67), Expect = 2.9 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 7/47 (14%) Frame = -2 Query: 326 PTEAPRSEPACPSRLPISTKEATATAGRST-------PPPPTKGTAG 207 P P PA PS P +T ++G ST PPPP G AG Sbjct: 141 PGPTPTPPPAVPSTAPGPPPPSTPSSGVSTTPPQTGGPPPPPAGGAG 187
>SPG7_DICDI (P22698) Spore germination protein 270-11| Length = 532 Score = 30.4 bits (67), Expect = 2.9 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -2 Query: 287 RLPISTKEATATAGRSTPPPPTKGTAGS 204 ++PI+T +T T G STP PT T+ S Sbjct: 109 QIPITTTSSTTTDGSSTPSTPTSTTSAS 136
>VGLD_PRVRI (P07645) Protein gp50| Length = 402 Score = 30.4 bits (67), Expect = 2.9 Identities = 16/39 (41%), Positives = 17/39 (43%) Frame = -2 Query: 329 PPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGT 213 P E + PA P RLP A GR TP PP T Sbjct: 279 PKPEPAPATPAPPDRLPEPATRDHAAGGRPTPRPPRPET 317
>DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent| ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differe Length = 1147 Score = 30.4 bits (67), Expect = 2.9 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = -2 Query: 329 PPTEAPRSEPACPSRLPISTK--EATATAGRSTPPPPTKG 216 PP A + PS LP+ T+ ++T + PPPP G Sbjct: 809 PPRNAGKGPTGPPSTLPLGTQTSSGSSTLSKKRPPPPPPG 848
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -2 Query: 347 DSCCTAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPP 228 +SCC PP P S+P SR+P+S + +++ TP P Sbjct: 2118 ESCCALPPRSLP-SDPF--SRVPVSPQSQSSSQSPLTPRP 2154
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 30.0 bits (66), Expect = 3.8 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 6/42 (14%) Frame = -2 Query: 332 APPTEAP------RSEPACPSRLPISTKEATATAGRSTPPPP 225 APP P S PA P R I K + +GRS P PP Sbjct: 2252 APPPPPPPLTLVLSSGPASPPRQAIRVKRVSTFSGRSPPAPP 2293
>FAS2_PENPA (P15368) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1857 Score = 30.0 bits (66), Expect = 3.8 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -2 Query: 329 PPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTAGSL 201 P E P + PS P + A A A + PPPP+ G A S+ Sbjct: 94 PVEEEPEATEPAPSATPAAP--AAAPAAGAPPPPPSAGPAASV 134
>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor| Length = 307 Score = 29.6 bits (65), Expect = 5.0 Identities = 19/77 (24%), Positives = 29/77 (37%) Frame = -2 Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTAGSLMSKEMXXXXXXXXXXX 153 APPT+ ++P C + P + K+ T T T P TK T +K Sbjct: 56 APPTQQSTTQPPCTTSKPTTPKQ-TTTQLPCTTPTTTKATT----TKPTTTKATTTKATT 110 Query: 152 XXXGCTWRRRPETPCAS 102 T + + PC + Sbjct: 111 TKPTTTKQTTTQLPCTT 127
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 29.6 bits (65), Expect = 5.0 Identities = 17/36 (47%), Positives = 18/36 (50%) Frame = -2 Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPP 225 APP+ P S PA PS P S K S PPPP Sbjct: 240 APPSPVPPS-PAPPSPAPPSPKPPAPPPPPSPPPPP 274
>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)| (153 kDa nucleoporin) Length = 1468 Score = 29.6 bits (65), Expect = 5.0 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -2 Query: 308 SEPACPSRLPISTKEATATAGRSTPPPPTKGTAGS 204 S+P PS IS+ A +AG PPPT GT S Sbjct: 1327 SQPNPPSFGSISSSTALFSAGSQPVPPPTFGTVSS 1361
>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,| muscle-specific form (Alpha-NAC, muscle-specific form) Length = 2187 Score = 29.6 bits (65), Expect = 5.0 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Frame = -2 Query: 329 PPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGT--AGS 204 PP+ + A P P + E TA PP P KG+ AGS Sbjct: 1349 PPSPRKAPKTAAPKETPAPSPEGATTAPVQIPPSPRKGSKKAGS 1392
>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3| Length = 299 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -2 Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTA 210 APP P P + +P +T+ T T PPPP TA Sbjct: 151 APPPPPPAPPPT--TEIPTATETQTVTVTPPPPPPPATTTA 189
>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3| Length = 299 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -2 Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTA 210 APP P P + +P +T+ T T PPPP TA Sbjct: 151 APPPPPPAPPPT--TEIPTATETQTVTVTPPPPPPPATTTA 189
>VE7_BPV2 (P11303) Protein E7| Length = 127 Score = 29.3 bits (64), Expect = 6.5 Identities = 16/43 (37%), Positives = 18/43 (41%) Frame = -2 Query: 344 SCCTAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKG 216 S C PT P + A RLP T G STPP + G Sbjct: 23 SPCAGTPTRVPAAPDAPDFRLPCHFGRPTRKRGPSTPPLSSPG 65
>TIM13_ARATH (Q9XH48) Mitochondrial import inner membrane translocase subunit| Tim13 Length = 87 Score = 29.3 bits (64), Expect = 6.5 Identities = 16/38 (42%), Positives = 18/38 (47%) Frame = -2 Query: 353 CRDSCCTAPPTEAPRSEPACPSRLPISTKEATATAGRS 240 C D C T P + SE +C SR EATA RS Sbjct: 45 CFDKCVTKPGSSLGGSESSCISRCVERYMEATAIISRS 82
>LIME1_MOUSE (Q9EQR5) Lck-interacting transmembrane adapter 1 (Lck-interacting| molecule) Length = 269 Score = 29.3 bits (64), Expect = 6.5 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -2 Query: 329 PPTEAPRSEPACPSRLPISTKEAT 258 PP + PR+ PA P+ P ++ EAT Sbjct: 113 PPRQLPRAPPAAPATAPSTSSEAT 136
>OVGP1_SHEEP (Q28542) Oviduct-specific glycoprotein precursor (Oviductal| glycoprotein) (Oviductin) (Estrogen-dependent oviduct protein) (Estrus-associated oviducal glycoprotein) (OEGP) Length = 539 Score = 29.3 bits (64), Expect = 6.5 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -2 Query: 335 TAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTK 219 +A T PR E A P+R P+S+ TA T P K Sbjct: 439 SATMTTTPRGETATPTRTPLSSGRRTAAPEGKTESPGEK 477
>AIPL1_PANPA (Q95MN9) Aryl-hydrocarbon-interacting protein-like 1| Length = 384 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -2 Query: 335 TAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKG 216 T PP ++ PA P P + A A +T PPP+ G Sbjct: 340 TEPPAQSSTEPPAEPPPAPSAELSAGPPAETATEPPPSPG 379
>AIPL1_HUMAN (Q9NZN9) Aryl-hydrocarbon-interacting protein-like 1| Length = 384 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -2 Query: 335 TAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKG 216 T PP ++ PA P P + A A +T PPP+ G Sbjct: 340 TEPPAQSSTEPPAEPPTAPSAELSAGPPAEPATEPPPSPG 379
>NAS15_CAEEL (P55115) Zinc metalloproteinase nas-15 precursor (EC 3.4.24.21)| (Nematode astacin 15) Length = 571 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = -2 Query: 341 CCTAPPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGT 213 C PPTE P + P + P+ T RS PP + T Sbjct: 471 CFKPPPTEIPDNRPTVVTTRPLVTLPPAVIRSRSPAPPVSTTT 513
>SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/SNF complex| component SNF5) (Transcription factor TYE4) Length = 905 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -2 Query: 335 TAPPTEAPRSEPACPSRL-PISTKEATATAGRSTPPPP 225 T+PP + +S P P + PI+ + AT STPPPP Sbjct: 70 TSPPPQTHQSPPPPPQQSQPIANQSAT-----STPPPP 102
>DAF_CAVPO (Q60401) Complement decay-accelerating factor precursor (CD55| antigen) [Contains: Complement decay-accelerating factor, GPI-anchored isoform] Length = 507 Score = 28.9 bits (63), Expect = 8.5 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = -2 Query: 329 PPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTAG 207 PPT +S P P + P +T T T P T TAG Sbjct: 279 PPTCRVKSPPVIPPQKPTTTSAPGTTTTLPTQKPTTVNTAG 319
>FOR3_SCHPO (O94532) Formin-3| Length = 1461 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/43 (32%), Positives = 17/43 (39%) Frame = -2 Query: 332 APPTEAPRSEPACPSRLPISTKEATATAGRSTPPPPTKGTAGS 204 +PP P P+ PI G PPPP G AG+ Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGA 773
>PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A activator 1 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1) (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl phosphatase activator 1) Length = 478 Score = 28.9 bits (63), Expect = 8.5 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = -2 Query: 326 PTEAPRSEPACPSRLP-ISTKEATATAGRSTPPPPTKGTA 210 P PR P + P TK ATA +STPPP T GTA Sbjct: 375 PETRPRQVPPSARQDPGPGTKAPWATASQSTPPPST-GTA 413
>ATPBM_MAIZE (P19023) ATP synthase beta chain, mitochondrial precursor (EC| 3.6.3.14) Length = 553 Score = 28.9 bits (63), Expect = 8.5 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 7/55 (12%) Frame = -2 Query: 332 APPTEAPRSEPACPS-------RLPISTKEATATAGRSTPPPPTKGTAGSLMSKE 189 +P PR+ P PS R A A A +TPPP T T G ++ E Sbjct: 21 SPAAPRPRAPPHRPSPAGYLFNRAAAYASSAAAQAAPATPPPATGKTGGGKITDE 75
>NFASC_RAT (P97685) Neurofascin precursor| Length = 1240 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = -2 Query: 308 SEPACPSRLPISTKEATATAGRSTPPPPTKGTAGSLMSKE 189 S A P EAT TA T PP T GT G + S + Sbjct: 908 SGEAATEESPTPPNEATPTAAPPTLPPTTVGTTGLVSSTD 947
>NFASC_MOUSE (Q810U3) Neurofascin precursor| Length = 1240 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = -2 Query: 308 SEPACPSRLPISTKEATATAGRSTPPPPTKGTAGSLMSKE 189 S A P EAT TA T PP T GT G + S + Sbjct: 908 SGEAATEESPAPPNEATPTAAPPTLPPTTVGTTGLVSSTD 947 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,042,850 Number of Sequences: 219361 Number of extensions: 533295 Number of successful extensions: 3579 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3078 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3537 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)