ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CH60_BACFO (P81284) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 29 7.7
2DRPE_CRAPL (P22242) Desiccation-related protein PCC13-62 precursor 29 7.7
3PLXB1_HUMAN (O43157) Plexin-B1 precursor (Semaphorin receptor SEP) 29 7.7

>CH60_BACFO (P81284) 60 kDa chaperonin (Protein Cpn60) (groEL protein)|
          Length = 543

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 156 SKIAIHKATVELHGSAYVRATPALLGDQGED 248
           ++ AI + TV   G AY+RA PAL G +GE+
Sbjct: 402 TRAAIEEGTVPGGGVAYLRAIPALEGLKGEN 432



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>DRPE_CRAPL (P22242) Desiccation-related protein PCC13-62 precursor|
          Length = 313

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 385 VQSAGSSAFLRGLGHEPEMKSAGEKTAIQSSAEGFSHP 272
           VQ A  S F+R +  +   +  G   AIQSS EGF  P
Sbjct: 83  VQKANLSPFIRDIIAQFAYQEFGHVRAIQSSVEGFPRP 120



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>PLXB1_HUMAN (O43157) Plexin-B1 precursor (Semaphorin receptor SEP)|
          Length = 2135

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
 Frame = +3

Query: 135  PEGIQPLSKIAIHKATVELHGSAYVRATPALLGDQGEDTVWVTVKYGWENPSADDWIA-- 308
            PE + P   + +  ATV           P  +G       W+T + G E P AD+W    
Sbjct: 807  PEALHPTVPLDLPPATVP------ATTFPGAMGSVKPALDWLT-REGGELPEADEWTGGD 859

Query: 309  --VFSPADFISGSCPNPR-RNADEPALCTAPIKYQY 407
               FS +  +SG   +        P +  + + YQY
Sbjct: 860  APAFSTSTLLSGDGDSAELEGPPAPLILPSSLDYQY 895


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,714,340
Number of Sequences: 219361
Number of extensions: 971636
Number of successful extensions: 3012
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3012
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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