ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 101 2e-38
2CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 98 5e-36
3RUAP_SOYBN (P39657) RuBisCO-associated protein 55 1e-07
4CHIX_STROI (Q05638) Exochitinase 1 precursor (EC 3.2.1.14) 32 1.4
5SRC_AVIS2 (P15054) Tyrosine-protein kinase transforming protein ... 32 1.8
6Y2415_ARCFU (O30256) UPF0219 protein AF2415 30 5.2
7EBAG_FLASP (P80036) Endo-beta-N-acetylglucosaminidase (EC 3.2.1.... 30 6.7
8Y1471_METMP (Q6LX81) Hypothetical UPF0348 protein MMP1471 30 6.7

>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score =  101 bits (251), Expect(2) = 2e-38
 Identities = 52/85 (61%), Positives = 62/85 (72%)
 Frame = +3

Query: 330 GATVNGRPVFFNATSGVDSWVRYAVDSLTGIIQRYGLDGIDIDYEQFQADPATFAECAGR 509
           G +V G  VFFN +S V SWV  AV SLT II++Y LDGIDIDYE F+ DP TFAEC G+
Sbjct: 82  GNSVGGERVFFNPSS-VSSWVDNAVSSLTKIIKQYHLDGIDIDYEHFKGDPNTFAECIGQ 140

Query: 510 LVAALKSSGVIRFASIAPYGNADVQ 584
           LV  LK +GV+ F SIAP+ +A VQ
Sbjct: 141 LVTRLKKNGVVSFVSIAPFDDAQVQ 165



 Score = 77.4 bits (189), Expect(2) = 2e-38
 Identities = 35/53 (66%), Positives = 41/53 (77%)
 Frame = +2

Query: 173 FRDYIGALYNGVRFADVPINPRARFDFILAFVIDYTTATEPPTPTNGRFNVFW 331
           FR+YIGA +N V+F+DVPINP   F FILAF IDYT+ +  PTPTNG FN FW
Sbjct: 3   FREYIGAQFNDVKFSDVPINPNVDFHFILAFAIDYTSGSS-PTPTNGNFNPFW 54



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>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 97.8 bits (242), Expect(2) = 5e-36
 Identities = 50/85 (58%), Positives = 62/85 (72%)
 Frame = +3

Query: 330 GATVNGRPVFFNATSGVDSWVRYAVDSLTGIIQRYGLDGIDIDYEQFQADPATFAECAGR 509
           G +V G+ VFF+ +S V SWV  AV SLT II++Y LDGIDIDYE F+ DP TFAEC G+
Sbjct: 108 GDSVGGKNVFFSPSS-VSSWVENAVSSLTRIIKQYHLDGIDIDYEHFKGDPNTFAECIGQ 166

Query: 510 LVAALKSSGVIRFASIAPYGNADVQ 584
           LV  LK + V+ F SIAP+ +A VQ
Sbjct: 167 LVTRLKKNEVVSFVSIAPFDDAQVQ 191



 Score = 73.2 bits (178), Expect(2) = 5e-36
 Identities = 33/53 (62%), Positives = 40/53 (75%)
 Frame = +2

Query: 173 FRDYIGALYNGVRFADVPINPRARFDFILAFVIDYTTATEPPTPTNGRFNVFW 331
           FR+YIG+ +N V+F+DVPINP   F FILAF IDYT+ +  PTPTNG F  FW
Sbjct: 29  FREYIGSQFNDVKFSDVPINPDVDFHFILAFAIDYTSGSS-PTPTNGNFKPFW 80



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>RUAP_SOYBN (P39657) RuBisCO-associated protein|
          Length = 283

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 30/75 (40%), Positives = 39/75 (52%)
 Frame = +3

Query: 351 PVFFNATSGVDSWVRYAVDSLTGIIQRYGLDGIDIDYEQFQADPATFAECAGRLVAALKS 530
           P    + S  ++WV  A  SL  II+ Y LDGID+ YE   A+ A F    G LV  LK 
Sbjct: 91  PFTIGSDSNSEAWVSEATASLKSIIKTYNLDGIDVSYEDIAANEADFVNSVGGLVRNLKQ 150

Query: 531 SGVIRFASIAPYGNA 575
           + +I  AS A   +A
Sbjct: 151 NKLITVASFATSADA 165



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>CHIX_STROI (Q05638) Exochitinase 1 precursor (EC 3.2.1.14)|
          Length = 597

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 402 VDSLTGIIQRYGLDGIDIDYE 464
           V S++ II  YGLDG+DID+E
Sbjct: 364 VSSVSKIIDEYGLDGLDIDFE 384



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>SRC_AVIS2 (P15054) Tyrosine-protein kinase transforming protein Src (EC|
           2.7.10.2) (p60-Src) (v-Src) (pp60v-src)
          Length = 586

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 236 RARFDFILAFVIDYTTATEPPTP 304
           R  F+++ AF+ DY T+TEPP P
Sbjct: 505 RPTFEYLQAFLEDYFTSTEPPVP 527



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>Y2415_ARCFU (O30256) UPF0219 protein AF2415|
          Length = 343

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 372 SGVDSWVRYAVDSLTGIIQRYGLDGIDIDYEQFQADPATFAECAGRLV 515
           +G+ ++ R+ + +  G++++YG    D DY  F    A F   A +++
Sbjct: 200 TGLPAYFRHVISAAKGLMEKYGYKVEDFDYAVFHMPNAKFPVRAAKML 247



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>EBAG_FLASP (P80036) Endo-beta-N-acetylglucosaminidase (EC 3.2.1.96)|
           (Mannosyl-glycoprotein
           endo-beta-N-acetyl-glucosaminidase)
           (DI-N-acetylchitobiosyl beta-N-acetylglucosaminidase)
          Length = 267

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +3

Query: 411 LTGIIQRYGLDGIDIDYEQ----FQADPATFAECAGRLVAALKS---SGVIRFASIAPYG 569
           ++  + +YGLDG+D+D E         P    +  G L++AL++     +I F  I P  
Sbjct: 111 VSATVSKYGLDGVDLDDEYSDYGTNGTPQPNQQSIGGLISALRADVPGKLISFYDIGPAS 170

Query: 570 NA 575
           +A
Sbjct: 171 SA 172



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>Y1471_METMP (Q6LX81) Hypothetical UPF0348 protein MMP1471|
          Length = 349

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 232 VDRHVREPDAVVKGADVVAEGVRVGVSCRG 143
           V+RH+R   A++ GAD+V EG  +G+   G
Sbjct: 91  VNRHIRAEMALLAGADLVVEGPPMGIMGSG 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,580,602
Number of Sequences: 219361
Number of extensions: 973277
Number of successful extensions: 2820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2818
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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