ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart44g04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative class III chitinase RCB4 (OSJNBa0032I20.7), mRNA Length = 924 Score = 135 bits (68), Expect = 2e-28 Identities = 146/172 (84%) Strand = Plus / Plus Query: 161 aactctaaccccttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| |||| |||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 79 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 138 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 139 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 198 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggc 332 |||| ||| | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 199 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggc 250 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 437 cctggacggcatcgacatcgactacgagcagttccaggcggacccagccaccttcgccga 496 |||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| Sbjct: 435 cctggacggcatcgacatcgactacgagcagttccaggtcgacccggacaccttcaccga 494 Query: 497 gtgcgccggccgtctcgtggcggcgctcaagagcagcggcgtgatcagattcgcgtccat 556 ||||| |||||| ||| | ||| ||||||| || || ||||||| ||||| ||||| Sbjct: 495 gtgcgtcggccgcctcatcacggtgctcaaggccaagggggtgatcaagttcgcctccat 554 Query: 557 cgcgccgtacggcaacgccga 577 |||||| | |||||||||||| Sbjct: 555 cgcgcccttcggcaacgccga 575
>gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III chitinase RCB4 (Rcb4) mRNA, complete cds Length = 1158 Score = 135 bits (68), Expect = 2e-28 Identities = 146/172 (84%) Strand = Plus / Plus Query: 161 aactctaaccccttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| |||| |||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 131 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 190 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 191 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 250 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggc 332 |||| ||| | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 251 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggc 302 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 437 cctggacggcatcgacatcgactacgagcagttccaggcggacccagccaccttcgccga 496 |||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| Sbjct: 487 cctggacggcatcgacatcgactacgagcagttccaggtcgacccggacaccttcaccga 546 Query: 497 gtgcgccggccgtctcgtggcggcgctcaagagcagcggcgtgatcagattcgcgtccat 556 ||||| |||||| ||| | ||| ||||||| || || ||||||| ||||| ||||| Sbjct: 547 gtgcgtcggccgcctcatcacggtgctcaaggccaagggggtgatcaagttcgcctccat 606 Query: 557 cgcgccgtacggcaacgccga 577 |||||| | |||||||||||| Sbjct: 607 cgcgcccttcggcaacgccga 627
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 135 bits (68), Expect = 2e-28 Identities = 146/172 (84%) Strand = Plus / Plus Query: 161 aactctaaccccttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| |||| |||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 14044922 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 14044981 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 14044982 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 14045041 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggc 332 |||| ||| | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 14045042 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggc 14045093 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 437 cctggacggcatcgacatcgactacgagcagttccaggcggacccagccaccttcgccga 496 |||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| Sbjct: 14045278 cctggacggcatcgacatcgactacgagcagttccaggtcgacccggacaccttcaccga 14045337 Query: 497 gtgcgccggccgtctcgtggcggcgctcaagagcagcggcgtgatcagattcgcgtccat 556 ||||| |||||| ||| | ||| ||||||| || || ||||||| ||||| ||||| Sbjct: 14045338 gtgcgtcggccgcctcatcacggtgctcaaggccaagggggtgatcaagttcgcctccat 14045397 Query: 557 cgcgccgtacggcaacgccga 577 |||||| | |||||||||||| Sbjct: 14045398 cgcgcccttcggcaacgccga 14045418 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 14088741 tacggcctcgacggcgtcgacgtcgactacgagca 14088775 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 14076301 tacggcctcgacggcgtcgacgtcgactacgagca 14076335 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 14076023 acttcatcctcgccttcgccatcgactac 14076051
>gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds Length = 941 Score = 135 bits (68), Expect = 2e-28 Identities = 146/172 (84%) Strand = Plus / Plus Query: 161 aactctaaccccttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| |||| |||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 4 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 63 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 64 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 123 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggc 332 |||| ||| | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 124 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggc 175 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 437 cctggacggcatcgacatcgactacgagcagttccaggcggacccagccaccttcgccga 496 |||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| Sbjct: 360 cctggacggcatcgacatcgactacgagcagttccaggtcgacccggacaccttcaccga 419 Query: 497 gtgcgccggccgtctcgtggcggcgctcaagagcagcggcgtgatcagattcgcgtccat 556 ||||| |||||| ||| | ||| ||||||| || || ||||||| ||||| ||||| Sbjct: 420 gtgcgtcggccgcctcatcacggtgctcaaggccaagggggtgatcaagttcgcctccat 479 Query: 557 cgcgccgtacggcaacgccga 577 |||||| | |||||||||||| Sbjct: 480 cgcgcccttcggcaacgccga 500
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 135 bits (68), Expect = 2e-28 Identities = 146/172 (84%) Strand = Plus / Plus Query: 161 aactctaaccccttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| |||| |||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 61051 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 61110 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 61111 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 61170 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggc 332 |||| ||| | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 61171 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggc 61222 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 437 cctggacggcatcgacatcgactacgagcagttccaggcggacccagccaccttcgccga 496 |||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| Sbjct: 61407 cctggacggcatcgacatcgactacgagcagttccaggtcgacccggacaccttcaccga 61466 Query: 497 gtgcgccggccgtctcgtggcggcgctcaagagcagcggcgtgatcagattcgcgtccat 556 ||||| |||||| ||| | ||| ||||||| || || ||||||| ||||| ||||| Sbjct: 61467 gtgcgtcggccgcctcatcacggtgctcaaggccaagggggtgatcaagttcgcctccat 61526 Query: 557 cgcgccgtacggcaacgccga 577 |||||| | |||||||||||| Sbjct: 61527 cgcgcccttcggcaacgccga 61547 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 104870 tacggcctcgacggcgtcgacgtcgactacgagca 104904 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 92430 tacggcctcgacggcgtcgacgtcgactacgagca 92464 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 92152 acttcatcctcgccttcgccatcgactac 92180
>dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093F02, full insert sequence Length = 1211 Score = 135 bits (68), Expect = 2e-28 Identities = 146/172 (84%) Strand = Plus / Plus Query: 161 aactctaaccccttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| |||| |||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 132 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 191 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 192 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 251 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggc 332 |||| ||| | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 252 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggc 303 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 437 cctggacggcatcgacatcgactacgagcagttccaggcggacccagccaccttcgccga 496 |||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| Sbjct: 488 cctggacggcatcgacatcgactacgagcagttccaggtcgacccggacaccttcaccga 547 Query: 497 gtgcgccggccgtctcgtggcggcgctcaagagcagcggcgtgatcagattcgcgtccat 556 ||||| |||||| ||| | ||| ||||||| || || ||||||| ||||| ||||| Sbjct: 548 gtgcgtcggccgcctcatcacggtgctcaaggccaagggggtgatcaagttcgcctccat 607 Query: 557 cgcgccgtacggcaacgccga 577 |||||| | |||||||||||| Sbjct: 608 cgcgcccttcggcaacgccga 628
>dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E04, full insert sequence Length = 1096 Score = 135 bits (68), Expect = 2e-28 Identities = 146/172 (84%) Strand = Plus / Plus Query: 161 aactctaaccccttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| |||| |||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 17 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 76 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 77 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 136 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggc 332 |||| ||| | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 137 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggc 188 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 437 cctggacggcatcgacatcgactacgagcagttccaggcggacccagccaccttcgccga 496 |||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| Sbjct: 373 cctggacggcatcgacatcgactacgagcagttccaggtcgacccggacaccttcaccga 432 Query: 497 gtgcgccggccgtctcgtggcggcgctcaagagcagcggcgtgatcagattcgcgtccat 556 ||||| |||||| ||| | ||| ||||||| || || ||||||| ||||| ||||| Sbjct: 433 gtgcgtcggccgcctcatcacggtgctcaaggccaagggggtgatcaagttcgcctccat 492 Query: 557 cgcgccgtacggcaacgccga 577 |||||| | |||||||||||| Sbjct: 493 cgcgcccttcggcaacgccga 513
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 135 bits (68), Expect = 2e-28 Identities = 146/172 (84%) Strand = Plus / Plus Query: 161 aactctaaccccttccgcgactacatcggcgccctttacaacggcgtcaggttcgcggac 220 ||||| |||| |||||| ||||||||||||||| | | ||||||||| | |||| | ||| Sbjct: 14053164 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 14053223 Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280 ||||| ||||| ||| | ||||||||||||||||||||| ||| |||||||||||||| Sbjct: 14053224 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 14053283 Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggc 332 |||| ||| | || |||||||||||||||||| ||||||| ||||||||| Sbjct: 14053284 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggc 14053335 Score = 113 bits (57), Expect = 7e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 437 cctggacggcatcgacatcgactacgagcagttccaggcggacccagccaccttcgccga 496 |||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| Sbjct: 14053520 cctggacggcatcgacatcgactacgagcagttccaggtcgacccggacaccttcaccga 14053579 Query: 497 gtgcgccggccgtctcgtggcggcgctcaagagcagcggcgtgatcagattcgcgtccat 556 ||||| |||||| ||| | ||| ||||||| || || ||||||| ||||| ||||| Sbjct: 14053580 gtgcgtcggccgcctcatcacggtgctcaaggccaagggggtgatcaagttcgcctccat 14053639 Query: 557 cgcgccgtacggcaacgccga 577 |||||| | |||||||||||| Sbjct: 14053640 cgcgcccttcggcaacgccga 14053660 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 14096983 tacggcctcgacggcgtcgacgtcgactacgagca 14097017 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 14084543 tacggcctcgacggcgtcgacgtcgactacgagca 14084577 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 14084265 acttcatcctcgccttcgccatcgactac 14084293
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 431 gtacggcctggacggcatcgacatcgactacgag 464 |||||||||||||||| |||||||||||| |||| Sbjct: 192961 gtacggcctggacggcctcgacatcgacttcgag 192994
>dbj|D84193.1| Streptomyces lividans gene for chitinase, complete cds Length = 2097 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 431 gtacggcctggacggcatcgacatcgactacgag 464 |||||||||||||||| |||||||||||| |||| Sbjct: 1275 gtacggcctggacggcctcgacatcgacttcgag 1308
>dbj|AB017009.1| Streptomyces coelicolor gene for ChiB, partial cds Length = 2687 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 431 gtacggcctggacggcatcgacatcgactacgag 464 |||||||||||||||| |||||||||||| |||| Sbjct: 1711 gtacggcctggacggcctcgacatcgacttcgag 1744
>dbj|AB075593.1| Chamaecyparis obtusa chi2 gene for chitinase class III like, 3' UTR, partial sequence Length = 573 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 441 gacggcatcgacatcgactacgagca 466 |||||||||||||||||||||||||| Sbjct: 57 gacggcatcgacatcgactacgagca 82
>dbj|AB075590.1| Taxodium distichum chi2 gene for chitinase class III like, 3' UTR, partial sequence Length = 577 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 441 gacggcatcgacatcgactacgagca 466 |||||||||||||||||||||||||| Sbjct: 57 gacggcatcgacatcgactacgagca 82
>dbj|AB075589.1| Glyptostrobus lineatus chi2 gene for chitinase class III like, 3' UTR, partial sequence Length = 600 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 441 gacggcatcgacatcgactacgagca 466 |||||||||||||||||||||||||| Sbjct: 57 gacggcatcgacatcgactacgagca 82
>dbj|AB035668.1| Tulipa bakeri tbc1 mRNA for bulb chitinase-1, complete cds Length = 1106 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactacacc 280 ||||||||||||| |||| ||||||||||||| Sbjct: 175 acttcatcctcgctttcgccatcgactacacc 206
>ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.12), mRNA Length = 867 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 367 tacggcctcgacggcgtcgacgtcgactacgagca 401
>ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.10), mRNA Length = 861 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 373 tacggcctcgacggcgtcgacgtcgactacgagca 407 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 95 acttcatcctcgccttcgccatcgactac 123
>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0061K21 From Chromosome 10, complete sequence Length = 112721 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 28379 tacggcctcgacggcgtcgacgtcgactacgagca 28413 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 15939 tacggcctcgacggcgtcgacgtcgactacgagca 15973 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 15661 acttcatcctcgccttcgccatcgactac 15689
>gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III chitinase (chib1) gene, complete cds Length = 1038 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 424 tacggcctcgacggcgtcgacgtcgactacgagca 458 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 146 acttcatcctcgccttcgccatcgactac 174
>dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E12, full insert sequence Length = 1089 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 391 tacggcctcgacggcgtcgacgtcgactacgagca 425
>dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C10, full insert sequence Length = 989 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 429 tacggcctcgacggcgtcgacgtcgactacgagca 463 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
>dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F06, full insert sequence Length = 1108 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 386 tacggcctcgacggcgtcgacgtcgactacgagca 420
>dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E05, full insert sequence Length = 1069 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 391 tacggcctcgacggcgtcgacgtcgactacgagca 425
>dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C04, full insert sequence Length = 1053 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 429 tacggcctcgacggcgtcgacgtcgactacgagca 463 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
>dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G07, full insert sequence Length = 1026 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 429 tacggcctcgacggcgtcgacgtcgactacgagca 463 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
>dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I19, full insert sequence Length = 1068 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 390 tacggcctcgacggcgtcgacgtcgactacgagca 424
>dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H08, full insert sequence Length = 1134 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 391 tacggcctcgacggcgtcgacgtcgactacgagca 425
>dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G07, full insert sequence Length = 1069 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 432 tacggcctggacggcatcgacatcgactacgagca 466 |||||||| |||||| ||||| ||||||||||||| Sbjct: 429 tacggcctcgacggcgtcgacgtcgactacgagca 463 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 acttcatcctcgcgttcgtcatcgactac 277 ||||||||||||| |||| |||||||||| Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 431 gtacggcctggacggcatcgacatcgactacgag 464 |||||||||||||||| | |||||||||| |||| Sbjct: 3178412 gtacggcctggacggcctggacatcgacttcgag 3178379
>dbj|AB075592.1| Thujopsis dolabrata chi2 gene for chitinase class III like, 3' UTR, partial sequence Length = 593 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 441 gacggcatcgacatcgactacgagca 466 ||||| |||||||||||||||||||| Sbjct: 57 gacggaatcgacatcgactacgagca 82
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 499 gcgccggccgtctcgtggcggcgctcaag 527 ||||||||||||||| |||| |||||||| Sbjct: 642684 gcgccggccgtctcgcggcgacgctcaag 642712
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 499 gcgccggccgtctcgtggcggcgctcaag 527 ||||||||||||||| |||| |||||||| Sbjct: 3132393 gcgccggccgtctcgcggcgacgctcaag 3132365
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 499 gcgccggccgtctcgtggcggcgctcaag 527 ||||||||||||||| |||| |||||||| Sbjct: 2862467 gcgccggccgtctcgcggcgacgctcaag 2862439
>gb|AC119426.2| Homo sapiens chromosome 1 clone RP11-203A2, complete sequence Length = 52339 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 29 accaaacaaaagcaggagtaacaaa 53 ||||||||||||||| ||||||||| Sbjct: 12063 accaaacaaaagcagtagtaacaaa 12087
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 ccaccgccacggagcccccgaccccgacc 307 ||||||||| ||| ||||||||||||||| Sbjct: 8216685 ccaccgccaaggaacccccgaccccgacc 8216713
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 490 tcgccgagtgcgccggccgtc 510 ||||||||||||||||||||| Sbjct: 6442603 tcgccgagtgcgccggccgtc 6442623
>dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450F09 Length = 148752 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 ccaccgccacggagcccccgaccccgacc 307 ||||||||| ||| ||||||||||||||| Sbjct: 40607 ccaccgccaaggaacccccgaccccgacc 40635
>emb|CR376854.12| Zebrafish DNA sequence from clone DKEY-197C15 in linkage group 24, complete sequence Length = 201044 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 aacaaaagcaggagtaacaaa 53 ||||||||||||||||||||| Sbjct: 173168 aacaaaagcaggagtaacaaa 173148
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 ggcatcgacatcgactacgag 464 ||||||||||||||||||||| Sbjct: 854803 ggcatcgacatcgactacgag 854823
>gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosome 15, complete sequence Length = 189263 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aacaaaagcaggagtaacaa 52 |||||||||||||||||||| Sbjct: 167561 aacaaaagcaggagtaacaa 167580
>gb|AC124467.3| Mus musculus BAC clone RP24-163L18 from chromosome 15, complete sequence Length = 169366 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 aacaaaagcaggagtaacaa 52 |||||||||||||||||||| Sbjct: 135667 aacaaaagcaggagtaacaa 135648
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ggacggcatcgacatcgact 459 |||||||||||||||||||| Sbjct: 5446969 ggacggcatcgacatcgact 5446950
>gb|AC107746.9| Mus musculus chromosome 1, clone RP23-311K2, complete sequence Length = 202822 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 agcaggagtaacaaaagcta 58 |||||||||||||||||||| Sbjct: 93565 agcaggagtaacaaaagcta 93584
>gb|AC122382.4| Mus musculus BAC clone RP23-479D11 from 13, complete sequence Length = 190429 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctccaactctaaccccttcc 176 |||||||||||||||||||| Sbjct: 88347 ctccaactctaaccccttcc 88328
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 552 tccatcgcgccgtacggcaacgcc 575 ||||||||||||| |||||||||| Sbjct: 1704802 tccatcgcgccgtccggcaacgcc 1704825 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,003,531 Number of Sequences: 3902068 Number of extensions: 3003531 Number of successful extensions: 56855 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56052 Number of HSP's gapped (non-prelim): 795 length of query: 589 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 566 effective length of database: 17,143,297,704 effective search space: 9703106500464 effective search space used: 9703106500464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
