ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart44g01 |
|---|---|
| Clone Library Name | barley_pub |
>PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homolog) (xSUG1)| Length = 461 Score = 159 bits (403), Expect = 4e-39 Identities = 79/119 (66%), Positives = 94/119 (78%) Frame = +1 Query: 211 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 390 LRQYYL I DLQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 15 LRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 74 Query: 391 MGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 M K KVLVKVHPEGK+VVD+DK+IDI +TP+ RVALRNDSY LH ILP+KVDPLV+LM Sbjct: 75 MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 133
>PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid hormone receptor-interacting protein 1) (TRIP1) Length = 406 Score = 157 bits (398), Expect = 2e-38 Identities = 78/119 (65%), Positives = 94/119 (78%) Frame = +1 Query: 211 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 390 LRQYYL I +LQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79 Query: 391 MGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 M K KVLVKVHPEGK+VVD+DK+IDI +TP+ RVALRNDSY LH ILP+KVDPLV+LM Sbjct: 80 MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 138
>PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (TAT-binding protein homolog 10) (TBP10) Length = 406 Score = 157 bits (398), Expect = 2e-38 Identities = 78/119 (65%), Positives = 94/119 (78%) Frame = +1 Query: 211 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 390 LRQYYL I +LQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79 Query: 391 MGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 M K KVLVKVHPEGK+VVD+DK+IDI +TP+ RVALRNDSY LH ILP+KVDPLV+LM Sbjct: 80 MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 138
>PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (mSUG1) Length = 406 Score = 157 bits (398), Expect = 2e-38 Identities = 78/119 (65%), Positives = 94/119 (78%) Frame = +1 Query: 211 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 390 LRQYYL I +LQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79 Query: 391 MGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 M K KVLVKVHPEGK+VVD+DK+IDI +TP+ RVALRNDSY LH ILP+KVDPLV+LM Sbjct: 80 MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 138
>PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid hormone receptor-interacting protein 1) (TRIP1) Length = 406 Score = 157 bits (398), Expect = 2e-38 Identities = 78/119 (65%), Positives = 94/119 (78%) Frame = +1 Query: 211 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 390 LRQYYL I +LQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79 Query: 391 MGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 M K KVLVKVHPEGK+VVD+DK+IDI +TP+ RVALRNDSY LH ILP+KVDPLV+LM Sbjct: 80 MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 138
>PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasome subunit p45)| (p45/SUG) (Proteasome 26S subunit ATPase 5) Length = 406 Score = 157 bits (398), Expect = 2e-38 Identities = 78/119 (65%), Positives = 94/119 (78%) Frame = +1 Query: 211 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 390 LRQYYL I +LQL + K+ NL RL+AQRN+LN++VR+LR GSYVGEVV+ Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79 Query: 391 MGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 M K KVLVKVHPEGK+VVD+DK+IDI +TP+ RVALRNDSY LH ILP+KVDPLV+LM Sbjct: 80 MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 138
>PRS8_DROME (O18413) 26S protease regulatory subunit 8| Length = 405 Score = 155 bits (392), Expect = 8e-38 Identities = 78/118 (66%), Positives = 92/118 (77%) Frame = +1 Query: 214 RQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVM 393 R YY+Q I +LQL + K NL RL+AQRN+LN++VRMLR GSYVGEVVK M Sbjct: 20 RSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPM 79 Query: 394 GKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 K KVLVKVHPEGK+VVDLDK+IDI +TP+ RVALRN+SY LH ILP+KVDPLV+LM Sbjct: 80 DKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLM 137
>PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (Protein let1)| Length = 403 Score = 154 bits (389), Expect = 2e-37 Identities = 79/117 (67%), Positives = 89/117 (76%) Frame = +1 Query: 217 QYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMG 396 QYY Q I D +L I KT NL RLEAQRN LN+RVR+LR PGSYVGEV+K MG Sbjct: 18 QYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMG 77 Query: 397 KSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 K+KVLVKVHPEGKYVVD+ IDI +I P+ RVALRNDSY L ILP+KVDPLV+LM Sbjct: 78 KNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLM 134
>PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 protein)| Length = 402 Score = 150 bits (378), Expect = 3e-36 Identities = 75/118 (63%), Positives = 91/118 (77%) Frame = +1 Query: 214 RQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVM 393 R YY+ I +LQL + K+ NL RL+AQRN+LN++VRMLR GSYVGEVVK M Sbjct: 17 RPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPM 76 Query: 394 GKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 K KVLVKVHPEGK+VVDLDK++DI +T + RVALRN+SY LH ILP+KVDPLV+LM Sbjct: 77 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLM 134
>PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (TAT-binding| protein homolog) Length = 414 Score = 149 bits (376), Expect = 5e-36 Identities = 71/120 (59%), Positives = 91/120 (75%) Frame = +1 Query: 211 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 390 L+ YY+ I + ++ +R K NL RL+AQRN+LN RVR L+ PGS+VGEVVKV Sbjct: 27 LKNYYIAKIQEKEIVLRDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVKV 86 Query: 391 MGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 MGK KVL+K+ EGKY+VD+DKSI++ +TP RVALRNDSY LH ILP+K+DPLV+LMK Sbjct: 87 MGKKKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMK 146
>PRS8_DICDI (P34124) 26S protease regulatory subunit 8 (TAT-binding protein| homolog 10) (Fragment) Length = 389 Score = 147 bits (370), Expect = 3e-35 Identities = 69/116 (59%), Positives = 93/116 (80%) Frame = +1 Query: 223 YLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKS 402 Y I +L++++ K +L RLEAQRN+LN+RVRML+ PGS+V EVVK+MGK+ Sbjct: 6 YCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKN 65 Query: 403 KVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 KVLVKV+PEGK+VVD+D ++DI K+TPSTR AL+++SY LH ILP+K+DPLV+LMK Sbjct: 66 KVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMK 121
>PRS8_YEAST (Q01939) 26S protease regulatory subunit 8 homolog (SUG1 protein)| (CIM3 protein) (TAT-binding protein TBY1) Length = 405 Score = 132 bits (332), Expect = 7e-31 Identities = 63/119 (52%), Positives = 86/119 (72%) Frame = +1 Query: 211 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 390 ++ Y+ Q I + +L+IR+KT N+ RLEAQRN LN +VR ++ PGSYVGEV+K+ Sbjct: 19 IKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKI 78 Query: 391 MGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 + KVLVKV PEGKY+VD+ K I++ + S RV LR+DSYMLH +L +K DPLV+LM Sbjct: 79 VSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLM 137
>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 396 Score = 56.2 bits (134), Expect = 6e-08 Identities = 35/113 (30%), Positives = 59/113 (52%) Frame = +1 Query: 220 YYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGK 399 Y + I L+LQ+R + RLE + + L S + LR P ++ G V++V+ Sbjct: 18 YLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQ-------PPAFAGSVIEVLDD 70 Query: 400 SKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLV 558 + +V+ + ++VV + ID +K+ P TRVAL + + ILP+ DP V Sbjct: 71 DRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAV 123
>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 399 Score = 55.5 bits (132), Expect = 1e-07 Identities = 35/113 (30%), Positives = 59/113 (52%) Frame = +1 Query: 220 YYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGK 399 Y + I L+LQ+R + RLE + + L S + LR P ++ G V++V+ + Sbjct: 21 YLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQ-------PPAFAGTVIEVLDE 73 Query: 400 SKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLV 558 + +V+ + ++VV + ID K+ P TRVAL + + ILP+ DP V Sbjct: 74 DRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTV 126
>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit| p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase domain protein 44) (CADp44) Length = 389 Score = 52.8 bits (125), Expect = 7e-07 Identities = 35/115 (30%), Positives = 51/115 (44%) Frame = +1 Query: 214 RQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVM 393 R LQ L+ + L L Q +L + G VGEV+K + Sbjct: 5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64 Query: 394 GKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLV 558 + K +VK +YVV + +D +K+ P TRVAL + + LP +VDPLV Sbjct: 65 TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLV 119
>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit| p42) (Proteasome 26S subunit ATPase 6) Length = 389 Score = 52.8 bits (125), Expect = 7e-07 Identities = 35/115 (30%), Positives = 51/115 (44%) Frame = +1 Query: 214 RQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVM 393 R LQ L+ + L L Q +L + G VGEV+K + Sbjct: 5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64 Query: 394 GKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLV 558 + K +VK +YVV + +D +K+ P TRVAL + + LP +VDPLV Sbjct: 65 TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLV 119
>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit| p42) (Proteasome 26S subunit ATPase 6) Length = 389 Score = 52.8 bits (125), Expect = 7e-07 Identities = 35/115 (30%), Positives = 51/115 (44%) Frame = +1 Query: 214 RQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVM 393 R LQ L+ + L L Q +L + G VGEV+K + Sbjct: 5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64 Query: 394 GKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLV 558 + K +VK +YVV + +D +K+ P TRVAL + + LP +VDPLV Sbjct: 65 TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLV 119
>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 399 Score = 52.0 bits (123), Expect = 1e-06 Identities = 33/113 (29%), Positives = 57/113 (50%) Frame = +1 Query: 220 YYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGK 399 Y + I L+LQ+R + RLE + + L S + LR P ++ G V++V+ Sbjct: 21 YLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQ-------PPAFAGTVIEVLDD 73 Query: 400 SKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLV 558 + +V+ + ++VV + I+ K+ P RVAL + + +LPS DP V Sbjct: 74 DRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTV 126
>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 397 Score = 51.6 bits (122), Expect = 2e-06 Identities = 32/110 (29%), Positives = 55/110 (50%) Frame = +1 Query: 229 QHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKSKV 408 + I L+LQ+RT LEA + L + LR P ++ G V++V+ + Sbjct: 22 RRIRQLELQVRT-------LEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERA 74 Query: 409 LVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLV 558 +V+ + ++VV + I+ K+ P RVAL + + +LPS+ DP V Sbjct: 75 IVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSV 124
>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 410 Score = 49.3 bits (116), Expect = 8e-06 Identities = 30/110 (27%), Positives = 54/110 (49%) Frame = +1 Query: 241 DLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKSKVLVKV 420 +L +IR + +E +R L+ V+ LR P + V +V+ +V VK Sbjct: 32 NLMWKIRKLEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKS 91 Query: 421 HPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 +V++ + ID ++ P RVAL ++ + +LPS+ DP+V M+ Sbjct: 92 TTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGME 141
>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)| (Proteasomal cap subunit) Length = 437 Score = 49.3 bits (116), Expect = 8e-06 Identities = 28/102 (27%), Positives = 51/102 (50%) Frame = +1 Query: 253 QIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKSKVLVKVHPEG 432 Q++ + N+ LE + + ++ L+ G +GEV+K + + K +VK Sbjct: 73 QLKQRRQNIRDLEKLYDKTENDIKALQSI-------GQLIGEVMKELSEEKYIVKASSGP 125 Query: 433 KYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLV 558 +Y+V + S+D +K+ RV L + + ILP + DPLV Sbjct: 126 RYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLV 167
>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 398 Score = 47.0 bits (110), Expect = 4e-05 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 7/121 (5%) Frame = +1 Query: 217 QYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSR-------VRMLRXXXXXXXXPGSYVG 375 QY L+ + L+ RLE ++ + S VR LR P VG Sbjct: 7 QYLLEKLKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVG 66 Query: 376 EVVKVMGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPL 555 V ++ +V+VK K+VV+ + I+ ++ P RVAL + + +LP+ DP+ Sbjct: 67 VVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPM 126 Query: 556 V 558 V Sbjct: 127 V 127
>PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7| Length = 435 Score = 46.2 bits (108), Expect = 6e-05 Identities = 22/56 (39%), Positives = 33/56 (58%) Frame = +1 Query: 403 KVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 + L+ V K+VVDL S+ T I RV + + Y +HL LP+K+DP V +M+ Sbjct: 112 RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQ 167
>PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4| Length = 388 Score = 45.1 bits (105), Expect = 1e-04 Identities = 31/115 (26%), Positives = 47/115 (40%) Frame = +1 Query: 214 RQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVM 393 R L+ LQ R L L DL + G +GEV+K + Sbjct: 4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQL 63 Query: 394 GKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLV 558 + +VK +YVV ++D + + RV+L + + ILP +VDPLV Sbjct: 64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLV 118
>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome| regulatory particle ATPase-like protein 4) Length = 406 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/69 (37%), Positives = 39/69 (56%) Frame = +1 Query: 361 GSYVGEVVKVMGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPS 540 G VGEV+K + + K +VK +YVV +SI+ ++ TRV+L + + LP Sbjct: 71 GQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPR 130 Query: 541 KVDPLVNLM 567 +VDPLV M Sbjct: 131 EVDPLVYKM 139
>PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 protein)| Length = 433 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/56 (35%), Positives = 31/56 (55%) Frame = +1 Query: 403 KVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 K ++ V K+VVDL + T I RV + + Y +H+ LP K+DP V +M+ Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQ 165
>PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)| Length = 432 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/56 (35%), Positives = 31/56 (55%) Frame = +1 Query: 403 KVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 K ++ V K+VVDL + T I RV + + Y +H+ LP K+DP V +M+ Sbjct: 109 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQ 164
>PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 protein)| Length = 432 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/56 (35%), Positives = 31/56 (55%) Frame = +1 Query: 403 KVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 K ++ V K+VVDL + T I RV + + Y +H+ LP K+DP V +M+ Sbjct: 109 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQ 164
>PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 protein)| Length = 432 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/56 (35%), Positives = 31/56 (55%) Frame = +1 Query: 403 KVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 K ++ V K+VVDL + T I RV + + Y +H+ LP K+DP V +M+ Sbjct: 109 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQ 164
>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 421 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/95 (23%), Positives = 46/95 (48%) Frame = +1 Query: 286 LEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDLDKSID 465 LE Q+ +R L+ +G V+ V+ +++V+ +++V++ + ID Sbjct: 55 LENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYID 114 Query: 466 ITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 K+ P +VAL + + ++PS +P V M+ Sbjct: 115 EKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAME 149
>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 420 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/95 (23%), Positives = 46/95 (48%) Frame = +1 Query: 286 LEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDLDKSID 465 LE Q+ +R L+ +G V+ V+ +++V+ +++V++ + ID Sbjct: 55 LENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYID 114 Query: 466 ITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 K+ P +VAL + + ++PS +P V M+ Sbjct: 115 EKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAME 149
>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 436 Score = 40.4 bits (93), Expect = 0.004 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 10/123 (8%) Frame = +1 Query: 232 HIHDLQLQIRTKTHNLNRLEAQRND---LNSRVRM-------LRXXXXXXXXPGSYVGEV 381 H L+++ R + LE +R++ L +R LR P VG V Sbjct: 47 HEEKLRIEARRRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTV 106 Query: 382 VKVMGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVN 561 +++ +V+VK K+V ++ ++D ++ P VAL S + +LPS+ D V Sbjct: 107 EEILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVL 166 Query: 562 LMK 570 M+ Sbjct: 167 AME 169
>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 409 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/107 (22%), Positives = 46/107 (42%) Frame = +1 Query: 250 LQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKSKVLVKVHPE 429 ++IR + L ++ L + + P V++V+ ++V+VK Sbjct: 23 VEIRILKDKVRSLTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTG 82 Query: 430 GKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 +V++ +D + P VAL N + +LP + DPLV M+ Sbjct: 83 PNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAME 129
>PRS7_SPIOL (Q41365) 26S protease regulatory subunit 7 (26S proteasome subunit| 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) Length = 426 Score = 38.1 bits (87), Expect = 0.018 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = +1 Query: 400 SKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 +K ++ V K+VV L + T I RV + + Y + + LP K+DP V +M Sbjct: 102 AKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMM 157
>PRS7_ORYSA (Q9FXT9) 26S protease regulatory subunit 7 (26S proteasome subunit| 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) Length = 426 Score = 38.1 bits (87), Expect = 0.018 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = +1 Query: 400 SKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 +K ++ V K+VV L + T I RV + + Y + + LP K+DP V +M Sbjct: 102 AKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMM 157
>PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S proteasome subunit| 7) (26S proteasome AAA-ATPase subunit RPT1a) (Regulatory particle triple-A ATPase subunit 1a) Length = 426 Score = 38.1 bits (87), Expect = 0.018 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = +1 Query: 400 SKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 +K ++ V K+VV L + T I RV + + Y + + LP K+DP V +M Sbjct: 102 AKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMM 157
>PRS7_PRUPE (O64982) 26S protease regulatory subunit 7 (26S proteasome subunit| 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) Length = 425 Score = 38.1 bits (87), Expect = 0.018 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = +1 Query: 400 SKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 +K ++ V K+VV L + T I RV + + Y + + LP K+DP V +M Sbjct: 101 AKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMM 156
>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 393 Score = 37.4 bits (85), Expect = 0.030 Identities = 25/105 (23%), Positives = 42/105 (40%) Frame = +1 Query: 256 IRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKVMGKSKVLVKVHPEGK 435 +R + L+ + +L + + P V+ V+ +VLV+ Sbjct: 20 VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPN 79 Query: 436 YVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 VV++ ID I P VAL + +LP K DP+V M+ Sbjct: 80 LVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTME 124
>PRS7_SCHPO (O42931) 26S protease regulatory subunit 7 homolog| Length = 438 Score = 37.4 bits (85), Expect = 0.030 Identities = 18/58 (31%), Positives = 30/58 (51%) Frame = +1 Query: 397 KSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 K+ ++ + K+VV L + + T I RV + Y + L LP K+DP V +M+ Sbjct: 112 KNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQ 169
>PRS7_YEAST (P33299) 26S protease regulatory subunit 7 homolog (CIM5 protein)| (TAT-binding homolog 3) Length = 467 Score = 35.8 bits (81), Expect = 0.088 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +1 Query: 400 SKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 +K ++ + K+VV L + + T I RV + Y + L LP ++DP V +M Sbjct: 143 AKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMM 198
>PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 392 Score = 34.3 bits (77), Expect = 0.26 Identities = 24/116 (20%), Positives = 45/116 (38%) Frame = +1 Query: 211 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 390 L Y +H + +R + L + L + + P V+ + Sbjct: 5 LDSYRAKHYNSDDPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDI 64 Query: 391 MGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLV 558 + KV+V+ +V++ +IDI K+ P + VAL + +LP + D V Sbjct: 65 LPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYV 120
>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog| Length = 423 Score = 33.9 bits (76), Expect = 0.33 Identities = 18/66 (27%), Positives = 36/66 (54%) Frame = +1 Query: 370 VGEVVKVMGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVD 549 +G+ ++ + ++ +V+ YVV + ++D K+ PS+ VAL S L ILP + D Sbjct: 90 IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEAD 149 Query: 550 PLVNLM 567 + ++ Sbjct: 150 SSIAML 155
>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)| Length = 448 Score = 33.1 bits (74), Expect = 0.57 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Frame = +1 Query: 211 LRQYYLQHIHDLQLQIRTKTHNLNRLEAQRNDLNSRVRMLRXXXXXXXXPGSYVGEVVKV 390 LR +Q IHD L N RL+ Q + R + R VG + ++ Sbjct: 67 LRLLKMQRIHDHLLMEEEYVQNQERLKPQ----DERTQEERNRVDEIRGTPMSVGTLEEI 122 Query: 391 MGKSKVLVKVH-PEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLM 567 + +V PE Y V + +D + P V L + + + +L DP++N+M Sbjct: 123 IDDDHAIVSTAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVM 180 Query: 568 K 570 K Sbjct: 181 K 181
>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog| Length = 389 Score = 32.7 bits (73), Expect = 0.74 Identities = 17/67 (25%), Positives = 36/67 (53%) Frame = +1 Query: 370 VGEVVKVMGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVD 549 +G+ ++ + ++ +V YVV + ++D + PS VAL+ S L ILP + D Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117 Query: 550 PLVNLMK 570 +++++ Sbjct: 118 SSISMLR 124
>PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog| Length = 387 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/66 (25%), Positives = 34/66 (51%) Frame = +1 Query: 370 VGEVVKVMGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVD 549 +G+ ++ + S +V +VV + ++D + P+T VAL S + +LP +VD Sbjct: 58 MGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVD 117 Query: 550 PLVNLM 567 + +M Sbjct: 118 STIPVM 123
>PR6AB_XENLA (O42586) 26S protease regulatory subunit 6A-B (TAT-binding protein| 10) (TBP-10) Length = 404 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = +1 Query: 409 LVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 ++K Y + + +D K+ P V + DSY++ LP++ D V M+ Sbjct: 88 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME 141
>PR6AA_XENLA (O42587) 26S protease regulatory subunit 6A-A (TAT-binding protein| 6) (TBP-6) Length = 405 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = +1 Query: 409 LVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 ++K Y + + +D K+ P V + DSY++ LP++ D V M+ Sbjct: 107 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME 160
>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)| Length = 415 Score = 29.3 bits (64), Expect = 8.2 Identities = 16/67 (23%), Positives = 34/67 (50%) Frame = +1 Query: 370 VGEVVKVMGKSKVLVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVD 549 +G+ ++ + ++ +V Y V + +ID + PS VAL S L +LP + D Sbjct: 86 IGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEAD 145 Query: 550 PLVNLMK 570 +++++ Sbjct: 146 SSISMLQ 152
>PRS6A_RAT (Q63569) 26S protease regulatory subunit 6A (TAT-binding protein 1)| (TBP-1) (Spermatogenic cell/sperm-associated TAT-binding protein homolog SATA) Length = 439 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = +1 Query: 409 LVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 ++K Y + + +D K+ P V + DSY++ LP++ D V M+ Sbjct: 123 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME 176
>PRS6A_HUMAN (P17980) 26S protease regulatory subunit 6A (TAT-binding protein 1)| (TBP-1) (Proteasome subunit P50) Length = 439 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = +1 Query: 409 LVKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMK 570 ++K Y + + +D K+ P V + DSY++ LP++ D V M+ Sbjct: 123 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME 176 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,993,901 Number of Sequences: 219361 Number of extensions: 762557 Number of successful extensions: 2750 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 2655 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2746 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
