ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart44f05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469419.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1219 Score = 369 bits (186), Expect = 6e-99 Identities = 375/438 (85%) Strand = Plus / Plus Query: 112 cctcccccttcgactgcctcctcatcgacctcgacgacacgctgtacccgggcaacaccg 171 ||||||| ||||||||| ||||| | |||||||||||||||||||||||||| | | | | Sbjct: 110 cctcccctttcgactgcgtcctctttgacctcgacgacacgctgtacccgggaagcgcgg 169 Query: 172 gcattggcccggcgctgaggcgcaacatcgacgagttccttgtggccaggttcggcctcg 231 |||| || | |||| || ||||||||||||||||||||| |||| ||| |||| || Sbjct: 170 gcatcgggctggcgacgaagcgcaacatcgacgagttcctcatggcacggtgcggcgtca 229 Query: 232 ccgccgacaaggccgccgcgctccgcgccgacctcttccgctcccacggcagcaccctcg 291 | || || ||||||||||||||||| ||| |||||||||||| |||||||| | |||| Sbjct: 230 cggcggagcgggccgccgcgctccgcgtcgagctcttccgctcctacggcagctcgctcg 289 Query: 292 ccggcctcatcgcgctcggccacgacgtgcaccccgacgagtaccacagctacgtgcacg 351 ||||||||||||| |||||| | ||||||||||| || |||||||||||||||||||||| Sbjct: 290 ccggcctcatcgctctcggctatgacgtgcacccggatgagtaccacagctacgtgcacg 349 Query: 352 ggaggctgccctacgacgtgatcgccgccgacccgcagctcgccgccgcgctccagagca 411 ||||||||||||||||| |||||||||||||||||||||||||| | || | ||||| Sbjct: 350 ggaggctgccctacgaccggatcgccgccgacccgcagctcgccggccttctgcggagca 409 Query: 412 tgccccagcgcaagatcctgttcaccaactctgaccgcgcgcacatgaggaggtcgctgg 471 | || |||||||| || ||||||||||||||||| |||||||||||||||| | ||||| Sbjct: 410 tcccgcagcgcaaaattctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgc 469 Query: 472 agcggctgggcctcgacgaggccctcttcgacggcgtcgtatgcttcgagaccatgaacc 531 |||||||| || ||||||||| | |||||||| |||||| ||||||||||||||||||| Sbjct: 470 agcggctgagcgtcgacgagggctgcttcgacgccgtcgtgtgcttcgagaccatgaacc 529 Query: 532 cgaatctcttcggcgagg 549 | | |||||||| |||| Sbjct: 530 ctcacctcttcggtgagg 547
>dbj|AK099563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034L20, full insert sequence Length = 1147 Score = 369 bits (186), Expect = 6e-99 Identities = 375/438 (85%) Strand = Plus / Plus Query: 112 cctcccccttcgactgcctcctcatcgacctcgacgacacgctgtacccgggcaacaccg 171 ||||||| ||||||||| ||||| | |||||||||||||||||||||||||| | | | | Sbjct: 109 cctcccctttcgactgcgtcctctttgacctcgacgacacgctgtacccgggaagcgcgg 168 Query: 172 gcattggcccggcgctgaggcgcaacatcgacgagttccttgtggccaggttcggcctcg 231 |||| || | |||| || ||||||||||||||||||||| |||| ||| |||| || Sbjct: 169 gcatcgggctggcgacgaagcgcaacatcgacgagttcctcatggcacggtgcggcgtca 228 Query: 232 ccgccgacaaggccgccgcgctccgcgccgacctcttccgctcccacggcagcaccctcg 291 | || || ||||||||||||||||| ||| |||||||||||| |||||||| | |||| Sbjct: 229 cggcggagcgggccgccgcgctccgcgtcgagctcttccgctcctacggcagctcgctcg 288 Query: 292 ccggcctcatcgcgctcggccacgacgtgcaccccgacgagtaccacagctacgtgcacg 351 ||||||||||||| |||||| | ||||||||||| || |||||||||||||||||||||| Sbjct: 289 ccggcctcatcgctctcggctatgacgtgcacccggatgagtaccacagctacgtgcacg 348 Query: 352 ggaggctgccctacgacgtgatcgccgccgacccgcagctcgccgccgcgctccagagca 411 ||||||||||||||||| |||||||||||||||||||||||||| | || | ||||| Sbjct: 349 ggaggctgccctacgaccggatcgccgccgacccgcagctcgccggccttctgcggagca 408 Query: 412 tgccccagcgcaagatcctgttcaccaactctgaccgcgcgcacatgaggaggtcgctgg 471 | || |||||||| || ||||||||||||||||| |||||||||||||||| | ||||| Sbjct: 409 tcccgcagcgcaaaattctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgc 468 Query: 472 agcggctgggcctcgacgaggccctcttcgacggcgtcgtatgcttcgagaccatgaacc 531 |||||||| || ||||||||| | |||||||| |||||| ||||||||||||||||||| Sbjct: 469 agcggctgagcgtcgacgagggctgcttcgacgccgtcgtgtgcttcgagaccatgaacc 528 Query: 532 cgaatctcttcggcgagg 549 | | |||||||| |||| Sbjct: 529 ctcacctcttcggtgagg 546
>dbj|AK061982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A11, full insert sequence Length = 1144 Score = 369 bits (186), Expect = 6e-99 Identities = 375/438 (85%) Strand = Plus / Plus Query: 112 cctcccccttcgactgcctcctcatcgacctcgacgacacgctgtacccgggcaacaccg 171 ||||||| ||||||||| ||||| | |||||||||||||||||||||||||| | | | | Sbjct: 110 cctcccctttcgactgcgtcctctttgacctcgacgacacgctgtacccgggaagcgcgg 169 Query: 172 gcattggcccggcgctgaggcgcaacatcgacgagttccttgtggccaggttcggcctcg 231 |||| || | |||| || ||||||||||||||||||||| |||| ||| |||| || Sbjct: 170 gcatcgggctggcgacgaagcgcaacatcgacgagttcctcatggcacggtgcggcgtca 229 Query: 232 ccgccgacaaggccgccgcgctccgcgccgacctcttccgctcccacggcagcaccctcg 291 | || || ||||||||||||||||| ||| |||||||||||| |||||||| | |||| Sbjct: 230 cggcggagcgggccgccgcgctccgcgtcgagctcttccgctcctacggcagctcgctcg 289 Query: 292 ccggcctcatcgcgctcggccacgacgtgcaccccgacgagtaccacagctacgtgcacg 351 ||||||||||||| |||||| | ||||||||||| || |||||||||||||||||||||| Sbjct: 290 ccggcctcatcgctctcggctatgacgtgcacccggatgagtaccacagctacgtgcacg 349 Query: 352 ggaggctgccctacgacgtgatcgccgccgacccgcagctcgccgccgcgctccagagca 411 ||||||||||||||||| |||||||||||||||||||||||||| | || | ||||| Sbjct: 350 ggaggctgccctacgaccggatcgccgccgacccgcagctcgccggccttctgcggagca 409 Query: 412 tgccccagcgcaagatcctgttcaccaactctgaccgcgcgcacatgaggaggtcgctgg 471 | || |||||||| || ||||||||||||||||| |||||||||||||||| | ||||| Sbjct: 410 tcccgcagcgcaaaattctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgc 469 Query: 472 agcggctgggcctcgacgaggccctcttcgacggcgtcgtatgcttcgagaccatgaacc 531 |||||||| || ||||||||| | |||||||| |||||| ||||||||||||||||||| Sbjct: 470 agcggctgagcgtcgacgagggctgcttcgacgccgtcgtgtgcttcgagaccatgaacc 529 Query: 532 cgaatctcttcggcgagg 549 | | |||||||| |||| Sbjct: 530 ctcacctcttcggtgagg 547
>dbj|AK061528.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D11, full insert sequence Length = 1112 Score = 369 bits (186), Expect = 6e-99 Identities = 375/438 (85%) Strand = Plus / Plus Query: 112 cctcccccttcgactgcctcctcatcgacctcgacgacacgctgtacccgggcaacaccg 171 ||||||| ||||||||| ||||| | |||||||||||||||||||||||||| | | | | Sbjct: 93 cctcccctttcgactgcgtcctctttgacctcgacgacacgctgtacccgggaagcgcgg 152 Query: 172 gcattggcccggcgctgaggcgcaacatcgacgagttccttgtggccaggttcggcctcg 231 |||| || | |||| || ||||||||||||||||||||| |||| ||| |||| || Sbjct: 153 gcatcgggctggcgacgaagcgcaacatcgacgagttcctcatggcacggtgcggcgtca 212 Query: 232 ccgccgacaaggccgccgcgctccgcgccgacctcttccgctcccacggcagcaccctcg 291 | || || ||||||||||||||||| ||| |||||||||||| |||||||| | |||| Sbjct: 213 cggcggagcgggccgccgcgctccgcgtcgagctcttccgctcctacggcagctcgctcg 272 Query: 292 ccggcctcatcgcgctcggccacgacgtgcaccccgacgagtaccacagctacgtgcacg 351 ||||||||||||| |||||| | ||||||||||| || |||||||||||||||||||||| Sbjct: 273 ccggcctcatcgctctcggctatgacgtgcacccggatgagtaccacagctacgtgcacg 332 Query: 352 ggaggctgccctacgacgtgatcgccgccgacccgcagctcgccgccgcgctccagagca 411 ||||||||||||||||| |||||||||||||||||||||||||| | || | ||||| Sbjct: 333 ggaggctgccctacgaccggatcgccgccgacccgcagctcgccggccttctgcggagca 392 Query: 412 tgccccagcgcaagatcctgttcaccaactctgaccgcgcgcacatgaggaggtcgctgg 471 | || |||||||| || ||||||||||||||||| |||||||||||||||| | ||||| Sbjct: 393 tcccgcagcgcaaaattctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgc 452 Query: 472 agcggctgggcctcgacgaggccctcttcgacggcgtcgtatgcttcgagaccatgaacc 531 |||||||| || ||||||||| | |||||||| |||||| ||||||||||||||||||| Sbjct: 453 agcggctgagcgtcgacgagggctgcttcgacgccgtcgtgtgcttcgagaccatgaacc 512 Query: 532 cgaatctcttcggcgagg 549 | | |||||||| |||| Sbjct: 513 ctcacctcttcggtgagg 530
>gb|AY108507.1| Zea mays PCO092437 mRNA sequence Length = 1277 Score = 363 bits (183), Expect = 4e-97 Identities = 374/435 (85%), Gaps = 2/435 (0%) Strand = Plus / Plus Query: 114 tcccccttcgactgcctcctcatcgacctcgacgacacgctgtacccgggcaacaccggc 173 ||||||||||||||| ||||| | |||||||||||||| |||||||||||| |||||||| Sbjct: 132 tcccccttcgactgcgtcctcctagacctcgacgacaccctgtacccgggcgacaccggc 191 Query: 174 attggcccggcgctgaggcgcaacatcgacgagttccttgtggccaggttcggcctcgcc 233 || ||| |||| |||||||||||||||||||||||||| ||||| | ||||| | | Sbjct: 192 atcggcgcggccctgaggcgcaacatcgacgagttcctccaggccaagctcggcgtgtcg 251 Query: 234 gccgacaaggccgccgcgctccgcgccgacctcttccgctcccacggcagcaccctcgcc 293 |||||| |||||||||| |||||||| ||||||||| | ||||||||| |||||||| Sbjct: 252 gccgacgaggccgccgccacgcgcgccgagctcttccgcgcgcacggcagctccctcgcc 311 Query: 294 ggcctcatcgcgctcggccacgacgtgcaccccgacgagtaccacagctacgtgcacggg 353 || ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct: 312 gggctcatcgcgctcggctacgacgtgcacccggacgagtaccacagctacgtgcacggc 371 Query: 354 aggctgccctacgacgtgatcgccgccgacccgcagctcgccgccgc-gctccagagcat 412 ||||| || |||||| |||||| |||||||||||| | ||| || ||| |||||||| Sbjct: 372 aggctaccgtacgacaggatcgcgcgcgacccgcagct-ggcgcggctgctgcagagcat 430 Query: 413 gccccagcgcaagatcctgttcaccaactctgaccgcgcgcacatgaggaggtcgctgga 472 || |||||||| | |||||||||||||| ||||||||||||||| | || ||||||| Sbjct: 431 cccgcagcgcaaagtgctgttcaccaactcggaccgcgcgcacatggagcgggcgctgga 490 Query: 473 gcggctgggcctcgacgaggccctcttcgacggcgtcgtatgcttcgagaccatgaaccc 532 |||||||||| | ||||||||| |||||||| |||||| |||||||||||||||||||| Sbjct: 491 gcggctgggcgtggacgaggccgccttcgacgccgtcgtgtgcttcgagaccatgaaccc 550 Query: 533 gaatctcttcggcga 547 | | || |||||||| Sbjct: 551 gcacctgttcggcga 565
>emb|X82617.1|ZMSSIP Z.mays mRNA for sugar-starvation induced protein Length = 1022 Score = 208 bits (105), Expect = 1e-50 Identities = 208/241 (86%), Gaps = 1/241 (0%) Strand = Plus / Plus Query: 255 cgcgccgacctcttccgctcccacggcagcaccctcgccggcctcatcgcgctcggccac 314 |||||||| ||||||||| | ||||||||| |||||||||| ||||||||||||||| || Sbjct: 32 cgcgccgagctcttccgcgcgcacggcagctccctcgccgggctcatcgcgctcggctac 91 Query: 315 gacgtgcaccccgacgagtaccacagctacgtgcacgggaggctgccctacgacgtgatc 374 ||||||||||| |||||||||||||||||||||||||| ||||| || |||||| |||| Sbjct: 92 gacgtgcacccggacgagtaccacagctacgtgcacggcaggctaccgtacgacaggatc 151 Query: 375 gccgccgacccgcagctcgccgc-cgcgctccagagcatgccccagcgcaagatcctgtt 433 || |||||||||||| | ||| | ||| |||||||| || |||||||| | ||||| Sbjct: 152 gcgcgcgacccgcagctgggcgcgcctgctgcagagcatcccgcagcgcaaagtgctgtt 211 Query: 434 caccaactctgaccgcgcgcacatgaggaggtcgctggagcggctgggcctcgacgaggc 493 ||||||||| ||||||||||||||| | || ||||||||||||||||| | |||||||| Sbjct: 212 caccaactcggaccgcgcgcacatggagcgggcgctggagcggctgggcgtggacgaggc 271 Query: 494 c 494 | Sbjct: 272 c 272
>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence Length = 127914 Score = 131 bits (66), Expect = 3e-27 Identities = 141/166 (84%) Strand = Plus / Plus Query: 138 gacctcgacgacacgctgtacccgggcaacaccggcattggcccggcgctgaggcgcaac 197 ||||| |||||||| ||||||||||||||||||||||| ||||| || |||| ||||||| Sbjct: 9499 gacctggacgacaccctgtacccgggcaacaccggcatcggccccgccctgaagcgcaac 9558 Query: 198 atcgacgagttccttgtggccaggttcggcctcgccgccgacaaggccgccgcgctccgc 257 |||||||||||||| ||||| | ||||| || | || || ||||||||||| | ||| Sbjct: 9559 atcgacgagttcctgcaggccaagctcggcgtctcggcggagaaggccgccgccatgcgc 9618 Query: 258 gccgacctcttccgctcccacggcagcaccctcgccggcctcatcg 303 | ||| ||||||||| | ||||||||| |||||||||| ||||||| Sbjct: 9619 gtcgagctcttccgcacgcacggcagctccctcgccggactcatcg 9664 Score = 125 bits (63), Expect = 2e-25 Identities = 102/115 (88%) Strand = Plus / Plus Query: 432 ttcaccaactctgaccgcgcgcacatgaggaggtcgctggagcggctgggcctcgacgag 491 ||||||||||| ||||| |||||||||| | || || |||||||||||||| | |||||| Sbjct: 10172 ttcaccaactcggaccgggcgcacatgaagcgggcgttggagcggctgggcgtggacgag 10231 Query: 492 gccctcttcgacggcgtcgtatgcttcgagaccatgaacccgaatctcttcggcg 546 ||| ||||||||| |||||| ||||||||||||||||||||| | |||||||||| Sbjct: 10232 gccgtcttcgacgccgtcgtgtgcttcgagaccatgaacccgcacctcttcggcg 10286 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 338 cagctacgtgcacgggaggctgccctacgacgtgatcgccgccgacccgcagct 391 ||||||||||||||| ||||| || |||||| ||||| |||||||||||||||| Sbjct: 9960 cagctacgtgcacggcaggctaccgtacgacatgatccccgccgacccgcagct 10013 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 303 gcgctcggccacgacgtgcaccccgacgagtaccacag 340 ||||||||| | ||||||||||| |||||||||||||| Sbjct: 9809 gcgctcggctatgacgtgcacccggacgagtaccacag 9846
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 121 bits (61), Expect = 3e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 429 ctgttcaccaactctgaccgcgcgcacatgaggaggtcgctggagcggctgggcctcgac 488 ||||||||||||||||| |||||||||||||||| | ||||| |||||||| || ||||| Sbjct: 96769 ctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgcagcggctgagcgtcgac 96828 Query: 489 gaggccctcttcgacggcgtcgtatgcttcgagaccatgaacccgaatctcttcggcgag 548 |||| | |||||||| |||||| |||||||||||||||||||| | |||||||| ||| Sbjct: 96829 gagggctgcttcgacgccgtcgtgtgcttcgagaccatgaaccctcacctcttcggtgag 96888 Query: 549 g 549 | Sbjct: 96889 g 96889 Score = 115 bits (58), Expect = 2e-22 Identities = 139/166 (83%) Strand = Plus / Plus Query: 138 gacctcgacgacacgctgtacccgggcaacaccggcattggcccggcgctgaggcgcaac 197 |||||||||||||||||||||||||| | | | ||||| || | |||| || ||||||| Sbjct: 96120 gacctcgacgacacgctgtacccgggaagcgcgggcatcgggctggcgacgaagcgcaac 96179 Query: 198 atcgacgagttccttgtggccaggttcggcctcgccgccgacaaggccgccgcgctccgc 257 |||||||||||||| |||| ||| |||| || | || || |||||||||||||||| Sbjct: 96180 atcgacgagttcctcatggcacggtgcggcgtcacggcggagcgggccgccgcgctccgc 96239 Query: 258 gccgacctcttccgctcccacggcagcaccctcgccggcctcatcg 303 | ||| |||||||||||| |||||||| | |||||||||||||||| Sbjct: 96240 gtcgagctcttccgctcctacggcagctcgctcgccggcctcatcg 96285 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Plus Query: 338 cagctacgtgcacgggaggctgccctacgacgtgatcgccgccgacccgcagctcgccg 396 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 96589 cagctacgtgcacgggaggctgccctacgaccggatcgccgccgacccgcagctcgccg 96647
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 3e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 429 ctgttcaccaactctgaccgcgcgcacatgaggaggtcgctggagcggctgggcctcgac 488 ||||||||||||||||| |||||||||||||||| | ||||| |||||||| || ||||| Sbjct: 27852639 ctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgcagcggctgagcgtcgac 27852698 Query: 489 gaggccctcttcgacggcgtcgtatgcttcgagaccatgaacccgaatctcttcggcgag 548 |||| | |||||||| |||||| |||||||||||||||||||| | |||||||| ||| Sbjct: 27852699 gagggctgcttcgacgccgtcgtgtgcttcgagaccatgaaccctcacctcttcggtgag 27852758 Query: 549 g 549 | Sbjct: 27852759 g 27852759 Score = 115 bits (58), Expect = 2e-22 Identities = 139/166 (83%) Strand = Plus / Plus Query: 138 gacctcgacgacacgctgtacccgggcaacaccggcattggcccggcgctgaggcgcaac 197 |||||||||||||||||||||||||| | | | ||||| || | |||| || ||||||| Sbjct: 27851990 gacctcgacgacacgctgtacccgggaagcgcgggcatcgggctggcgacgaagcgcaac 27852049 Query: 198 atcgacgagttccttgtggccaggttcggcctcgccgccgacaaggccgccgcgctccgc 257 |||||||||||||| |||| ||| |||| || | || || |||||||||||||||| Sbjct: 27852050 atcgacgagttcctcatggcacggtgcggcgtcacggcggagcgggccgccgcgctccgc 27852109 Query: 258 gccgacctcttccgctcccacggcagcaccctcgccggcctcatcg 303 | ||| |||||||||||| |||||||| | |||||||||||||||| Sbjct: 27852110 gtcgagctcttccgctcctacggcagctcgctcgccggcctcatcg 27852155 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Plus Query: 338 cagctacgtgcacgggaggctgccctacgacgtgatcgccgccgacccgcagctcgccg 396 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 27852459 cagctacgtgcacgggaggctgccctacgaccggatcgccgccgacccgcagctcgccg 27852517
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 3e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 429 ctgttcaccaactctgaccgcgcgcacatgaggaggtcgctggagcggctgggcctcgac 488 ||||||||||||||||| |||||||||||||||| | ||||| |||||||| || ||||| Sbjct: 27943963 ctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgcagcggctgagcgtcgac 27944022 Query: 489 gaggccctcttcgacggcgtcgtatgcttcgagaccatgaacccgaatctcttcggcgag 548 |||| | |||||||| |||||| |||||||||||||||||||| | |||||||| ||| Sbjct: 27944023 gagggctgcttcgacgccgtcgtgtgcttcgagaccatgaaccctcacctcttcggtgag 27944082 Query: 549 g 549 | Sbjct: 27944083 g 27944083 Score = 115 bits (58), Expect = 2e-22 Identities = 139/166 (83%) Strand = Plus / Plus Query: 138 gacctcgacgacacgctgtacccgggcaacaccggcattggcccggcgctgaggcgcaac 197 |||||||||||||||||||||||||| | | | ||||| || | |||| || ||||||| Sbjct: 27943314 gacctcgacgacacgctgtacccgggaagcgcgggcatcgggctggcgacgaagcgcaac 27943373 Query: 198 atcgacgagttccttgtggccaggttcggcctcgccgccgacaaggccgccgcgctccgc 257 |||||||||||||| |||| ||| |||| || | || || |||||||||||||||| Sbjct: 27943374 atcgacgagttcctcatggcacggtgcggcgtcacggcggagcgggccgccgcgctccgc 27943433 Query: 258 gccgacctcttccgctcccacggcagcaccctcgccggcctcatcg 303 | ||| |||||||||||| |||||||| | |||||||||||||||| Sbjct: 27943434 gtcgagctcttccgctcctacggcagctcgctcgccggcctcatcg 27943479 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Plus Query: 338 cagctacgtgcacgggaggctgccctacgacgtgatcgccgccgacccgcagctcgccg 396 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 27943783 cagctacgtgcacgggaggctgccctacgaccggatcgccgccgacccgcagctcgccg 27943841
>gb|AY106832.1| Zea mays PCO074808 mRNA sequence Length = 1378 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 120 ttcgactgcctcctcatcgacctcgacgacacgctgta 157 ||||||||||| ||| |||||||||||||||| ||||| Sbjct: 208 ttcgactgcctgctcttcgacctcgacgacaccctgta 245
>gb|AF421538.2| Crypthecodinium cohnii BiP (BiP) mRNA, partial cds Length = 2238 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 488 cgaggccctcttcgacggcgtcg 510 ||||||||||||||||||||||| Sbjct: 987 cgaggccctcttcgacggcgtcg 1009
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 365 cgacgtgatcgccgccgacccgcagctcgccgcc 398 ||||||||||||| ||||||||||| || ||||| Sbjct: 1049004 cgacgtgatcgcccccgacccgcaggtcaccgcc 1049037
>gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcomycin biosynthetic gene cluster, partial sequence Length = 85915 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 242 ggccgccgcgctccgcgccgac 263 |||||||||||||||||||||| Sbjct: 74167 ggccgccgcgctccgcgccgac 74146
>ref|XM_450329.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1835 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 384 ccgcagctcgccgccgcgctcc 405 |||||||||||||||||||||| Sbjct: 1175 ccgcagctcgccgccgcgctcc 1154
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 230 cgccgccgacaaggccgccgcg 251 |||||||||||||||||||||| Sbjct: 1212760 cgccgccgacaaggccgccgcg 1212781
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 373 tcgccgccgacccgcagctcgc 394 |||||||||||||||||||||| Sbjct: 1712464 tcgccgccgacccgcagctcgc 1712485
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 136 tcgacctcgacgacacgctgtacccg 161 ||||||||||| |||||||||||||| Sbjct: 345714 tcgacctcgacaacacgctgtacccg 345689
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 230 cgccgccgacaaggccgccgcg 251 |||||||||||||||||||||| Sbjct: 2528780 cgccgccgacaaggccgccgcg 2528801
>gb|AE005815.1| Caulobacter crescentus CB15 section 141 of 359 of the complete genome Length = 9132 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 233 cgccgacaaggccgccgcgctc 254 |||||||||||||||||||||| Sbjct: 6957 cgccgacaaggccgccgcgctc 6978
>gb|AC144374.5| Gallus gallus strain White Leghorn clone xx-37d21, complete sequence Length = 141874 Score = 44.1 bits (22), Expect = 0.48 Identities = 37/41 (90%), Gaps = 2/41 (4%) Strand = Plus / Plus Query: 224 cggcctcgccgccg--acaaggccgccgcgctccgcgccga 262 |||||||||| ||| |||| |||||||||||||||||||| Sbjct: 61987 cggcctcgccaccggcacaaagccgccgcgctccgcgccga 62027
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 230 cgccgccgacaaggccgccgcg 251 |||||||||||||||||||||| Sbjct: 234077 cgccgccgacaaggccgccgcg 234056
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 384 ccgcagctcgccgccgcgctcc 405 |||||||||||||||||||||| Sbjct: 4174909 ccgcagctcgccgccgcgctcc 4174888 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 cgactgcctcctcatcgacc 141 |||||||||||||||||||| Sbjct: 929679 cgactgcctcctcatcgacc 929698
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 381 gacccgcagctcgccgccgcgctccagagc 410 |||||||||||| ||| ||||||||||||| Sbjct: 453633 gacccgcagctcaccgtcgcgctccagagc 453604
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 384 ccgcagctcgccgccgcgctcc 405 |||||||||||||||||||||| Sbjct: 158390 ccgcagctcgccgccgcgctcc 158369
>dbj|AK106263.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F09, full insert sequence Length = 2025 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 384 ccgcagctcgccgccgcgctcc 405 |||||||||||||||||||||| Sbjct: 357 ccgcagctcgccgccgcgctcc 378
>dbj|AK101561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050D17, full insert sequence Length = 1833 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 384 ccgcagctcgccgccgcgctcc 405 |||||||||||||||||||||| Sbjct: 1173 ccgcagctcgccgccgcgctcc 1152
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 286 ccctcgccggcctcatcgcgctcggc 311 ||||||||| |||||||||||||||| Sbjct: 348670 ccctcgccgtcctcatcgcgctcggc 348645
>ref|NM_188345.1| Oryza sativa (japonica cultivar-group), Ozsa8096 predicted mRNA Length = 642 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 ggccgccgcgctccgcgccgacctc 266 |||||||||||||||||||| |||| Sbjct: 3 ggccgccgcgctccgcgccgccctc 27
>ref|XM_847960.1| PREDICTED: Canis familiaris hypothetical protein LOC610450 (LOC610450), mRNA Length = 792 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 457 tgaggaggtcgctggagcggctggg 481 |||||||||||||||||||| |||| Sbjct: 620 tgaggaggtcgctggagcggatggg 644
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 160 cgggcaacaccggcattggcccggcgctg 188 |||||||||||||||| |||| ||||||| Sbjct: 2982660 cgggcaacaccggcatgggcctggcgctg 2982688
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gccgacaaggccgccgcgctc 254 ||||||||||||||||||||| Sbjct: 546993 gccgacaaggccgccgcgctc 547013
>emb|AL732630.6| Mouse DNA sequence from clone RP23-315J17 on chromosome 11 Contains the 5' end of the Slit3 gene for slit homolog 3 (Drosophila) and a CpG island, complete sequence Length = 88592 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ctgcacatcaaaatcacccca 35 ||||||||||||||||||||| Sbjct: 16098 ctgcacatcaaaatcacccca 16118
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 278 cggcagcaccctcgccggcctcatc 302 ||||||||||||||||| ||||||| Sbjct: 1113552 cggcagcaccctcgccgacctcatc 1113528 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 496 tcttcgacggcgtcgtatgcttcg 519 |||||||| ||||||||||||||| Sbjct: 133798 tcttcgaccgcgtcgtatgcttcg 133821
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 ggccgccgcgctccgcgccgacctc 266 |||||||||||||||||||| |||| Sbjct: 5796596 ggccgccgcgctccgcgccgccctc 5796572
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 gatcgccgccgacccgcagct 391 ||||||||||||||||||||| Sbjct: 4464931 gatcgccgccgacccgcagct 4464911 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 cgacgaggccctcttcgacg 504 |||||||||||||||||||| Sbjct: 5355618 cgacgaggccctcttcgacg 5355599 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 agctcgccgccgcgctccag 407 |||||||||||||||||||| Sbjct: 3300726 agctcgccgccgcgctccag 3300745
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 cgccgacccgcagctcgccgc 397 ||||||||||||||||||||| Sbjct: 2642932 cgccgacccgcagctcgccgc 2642912 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 293 cggcctcatcgcgctcggccacgac 317 |||||||||||||||||||| |||| Sbjct: 1488396 cggcctcatcgcgctcggcctcgac 1488420 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ggccgccgcgctccgcgccg 261 |||||||||||||||||||| Sbjct: 1518378 ggccgccgcgctccgcgccg 1518397
>gb|AC151826.8| Monodelphis domestica, clone XX-25F7, complete sequence Length = 152619 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 36 actcttctcaagtttgaagaggctc 60 ||||||||| ||||||||||||||| Sbjct: 88173 actcttctccagtttgaagaggctc 88197
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 ggccgccgcgctccgcgccgacctc 266 |||||||||||||||||||| |||| Sbjct: 337 ggccgccgcgctccgcgccgccctc 313
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451C06 Length = 151773 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 ggccgccgcgctccgcgccgacctc 266 |||||||||||||||||||| |||| Sbjct: 121298 ggccgccgcgctccgcgccgccctc 121274
>ref|XM_319887.2| Anopheles gambiae str. PEST ENSANGP00000010636 (ENSANGG00000008147), partial mRNA Length = 2565 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 gctccgcgccgacctcttccg 271 ||||||||||||||||||||| Sbjct: 154 gctccgcgccgacctcttccg 134
>dbj|AK102840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109M13, full insert sequence Length = 1028 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 ggccgccgcgctccgcgccgacctc 266 |||||||||||||||||||| |||| Sbjct: 81 ggccgccgcgctccgcgccgccctc 105
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gccgacaaggccgccgcgctc 254 ||||||||||||||||||||| Sbjct: 268740 gccgacaaggccgccgcgctc 268760
>gb|AC169371.2| Sorghum bicolor clone SB_BBc0127F08, complete sequence Length = 70712 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 cgccgccgacaaggccgccgc 250 ||||||||||||||||||||| Sbjct: 28616 cgccgccgacaaggccgccgc 28636
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccgccgacccgcagctcgcc 395 ||||||||||||||||||||| Sbjct: 2744379 gccgccgacccgcagctcgcc 2744399
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 gccgcgctccagagcatgccccagc 420 ||||||||||||| ||||||||||| Sbjct: 3138366 gccgcgctccagaccatgccccagc 3138390
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccgccgacaaggccgccgcg 251 |||||||||||||||||||| Sbjct: 44772 ccgccgacaaggccgccgcg 44753
>ref|XM_483291.1| Oryza sativa (japonica cultivar-group), mRNA Length = 998 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 243 gccgccgcgctccgcgccgacctcttccgctc 274 |||||||||| ||||||||||| | ||||||| Sbjct: 201 gccgccgcgcgccgcgccgaccgcctccgctc 232
>ref|XM_450001.1| Oryza sativa (japonica cultivar-group), mRNA Length = 555 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 cgactgcctcctcatcgacc 141 |||||||||||||||||||| Sbjct: 366 cgactgcctcctcatcgacc 347
>ref|XM_479452.1| Oryza sativa (japonica cultivar-group), mRNA Length = 699 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 cgccgacccgcagctcgccgccgc 400 |||||||| ||||||||||||||| Sbjct: 282 cgccgacctgcagctcgccgccgc 305
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ccggcctcatcgcgctcggc 311 |||||||||||||||||||| Sbjct: 3179358 ccggcctcatcgcgctcggc 3179339
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ccggcctcatcgcgctcggc 311 |||||||||||||||||||| Sbjct: 1621493 ccggcctcatcgcgctcggc 1621512
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 tgatcgccgccgacccgcagctcg 393 ||||| |||||||||||||||||| Sbjct: 927171 tgatcaccgccgacccgcagctcg 927194
>gb|AF441790.2| Synechococcus sp. PCC 7942 plasmid pANL, complete sequence Length = 46366 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cgggcaacaccggcattggc 179 |||||||||||||||||||| Sbjct: 36335 cgggcaacaccggcattggc 36354
>gb|AF525691.2| Chlamydomonas reinhardtii RNA polymerase sigma factor (RpoD) gene, complete cds; nuclear gene for chloroplast product Length = 5013 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 acggcagcaccctcgccggc 296 |||||||||||||||||||| Sbjct: 863 acggcagcaccctcgccggc 882
>ref|XM_001002302.1| PREDICTED: Mus musculus similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16) (LOC672880), mRNA Length = 2347 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 atcctgttcaccaactctga 445 |||||||||||||||||||| Sbjct: 185 atcctgttcaccaactctga 166
>ref|XM_355900.4| PREDICTED: Mus musculus solute carrier family 6, member 16 (LOC381884), mRNA Length = 2392 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 atcctgttcaccaactctga 445 |||||||||||||||||||| Sbjct: 185 atcctgttcaccaactctga 166
>ref|XM_914689.2| PREDICTED: Mus musculus solute carrier family 6, member 16 (LOC381884), mRNA Length = 2392 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 atcctgttcaccaactctga 445 |||||||||||||||||||| Sbjct: 185 atcctgttcaccaactctga 166
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gccgccgacaaggccgccgc 250 |||||||||||||||||||| Sbjct: 658117 gccgccgacaaggccgccgc 658098
>ref|XM_503785.1| Yarrowia lipolytica CLIB122, YALI0E10549g predicted mRNA Length = 1959 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 tccttgtggccaggttcggcctcg 231 |||||||||||| ||||||||||| Sbjct: 488 tccttgtggccatgttcggcctcg 465
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 cgccgacaaggccgccgcgc 252 |||||||||||||||||||| Sbjct: 2983778 cgccgacaaggccgccgcgc 2983759 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 acgacgtgatcgccgccgac 383 |||||||||||||||||||| Sbjct: 1749166 acgacgtgatcgccgccgac 1749185 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 tcgccggcctcatcgcgctcggcc 312 |||||||||| ||||||||||||| Sbjct: 1135100 tcgccggcctgatcgcgctcggcc 1135077 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 ctcgccggcctcatcgcgctcggc 311 ||||||||||| |||||||||||| Sbjct: 379922 ctcgccggcctgatcgcgctcggc 379945
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ccgccgacaaggccgccgcg 251 |||||||||||||||||||| Sbjct: 72910 ccgccgacaaggccgccgcg 72929
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 224 cggcctcgccgccgacaaggccgccgcg 251 |||| |||||| |||||||||||||||| Sbjct: 550955 cggcttcgccgtcgacaaggccgccgcg 550928
>emb|X95444.1|SLRHOGENE S.lividans Rho gene Length = 2986 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gccgccgacaaggccgccgc 250 |||||||||||||||||||| Sbjct: 780 gccgccgacaaggccgccgc 799
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ccgacaaggccgccgcgctc 254 |||||||||||||||||||| Sbjct: 202309 ccgacaaggccgccgcgctc 202328
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ccgacaaggccgccgcgctc 254 |||||||||||||||||||| Sbjct: 205751 ccgacaaggccgccgcgctc 205770
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ccgacaaggccgccgcgctc 254 |||||||||||||||||||| Sbjct: 142093 ccgacaaggccgccgcgctc 142074
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ccggcctcatcgcgctcggc 311 |||||||||||||||||||| Sbjct: 1508641 ccggcctcatcgcgctcggc 1508660
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 cctcgccgccgacaaggccgccgc 250 ||||||||||| |||||||||||| Sbjct: 102290 cctcgccgccgccaaggccgccgc 102267
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gccgccgacaaggccgccgc 250 |||||||||||||||||||| Sbjct: 145654 gccgccgacaaggccgccgc 145673
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 cgacgaggccctcttcgacg 504 |||||||||||||||||||| Sbjct: 279842 cgacgaggccctcttcgacg 279861
>emb|AJ627180.1| Chlamydomonas reinhardtii sig1 gene for sigma-like transcription factor, exons 1-4 Length = 6047 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 acggcagcaccctcgccggc 296 |||||||||||||||||||| Sbjct: 2127 acggcagcaccctcgccggc 2146
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 cgccgacaaggccgccgcgctccg 256 ||||||||||| |||||||||||| Sbjct: 2571109 cgccgacaaggacgccgcgctccg 2571086
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 gcctcgccgccgacaaggccgccg 249 |||||||||||| ||||||||||| Sbjct: 1285189 gcctcgccgccgccaaggccgccg 1285166
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 cgccgacaaggccgccgcgc 252 |||||||||||||||||||| Sbjct: 53531 cgccgacaaggccgccgcgc 53512
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tcgccgccgacccgcagctc 392 |||||||||||||||||||| Sbjct: 5097835 tcgccgccgacccgcagctc 5097854 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 tcgccggcctcatcgcgctcggcc 312 |||||||||| ||||||||||||| Sbjct: 1022825 tcgccggcctgatcgcgctcggcc 1022802
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 377 cgccgacccgcagctcgccgccgcgctc 404 ||||||||||||| ||||||||| |||| Sbjct: 136368 cgccgacccgcagatcgccgccgggctc 136341
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 243 gccgccgcgctccgcgccgacctcttccgctc 274 |||||||||| ||||||||||| | ||||||| Sbjct: 25313276 gccgccgcgcgccgcgccgaccgcctccgctc 25313245
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 cgccgacccgcagctcgccgccgc 400 |||||||| ||||||||||||||| Sbjct: 28286414 cgccgacctgcagctcgccgccgc 28286437
>dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0646B04 Length = 178896 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 cgactgcctcctcatcgacc 141 |||||||||||||||||||| Sbjct: 93806 cgactgcctcctcatcgacc 93825
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 gcgctccgcgccgacctcttccgc 272 ||||||||||||||||||| |||| Sbjct: 3109281 gcgctccgcgccgacctctcccgc 3109304
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ccgacaaggccgccgcgctc 254 |||||||||||||||||||| Sbjct: 3096663 ccgacaaggccgccgcgctc 3096644
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 cgccgacccgcagctcgccgccgc 400 |||||||| ||||||||||||||| Sbjct: 141959 cgccgacctgcagctcgccgccgc 141982
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 cgccgacccgcagctcgccgccgc 400 |||||||| ||||||||||||||| Sbjct: 11977 cgccgacctgcagctcgccgccgc 12000
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 243 gccgccgcgctccgcgccgacctcttccgctc 274 |||||||||| ||||||||||| | ||||||| Sbjct: 88461 gccgccgcgcgccgcgccgaccgcctccgctc 88430
>dbj|AK111180.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-F12, full insert sequence Length = 3298 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 cggccacgacgtgcaccccgacga 331 ||||||||||||||| |||||||| Sbjct: 1407 cggccacgacgtgcagcccgacga 1430
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 cgccggcctcatcgcgctcggcca 313 |||||||||||| ||||||||||| Sbjct: 33587 cgccggcctcatggcgctcggcca 33564
>dbj|AK069393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012H05, full insert sequence Length = 998 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 243 gccgccgcgctccgcgccgacctcttccgctc 274 |||||||||| ||||||||||| | ||||||| Sbjct: 201 gccgccgcgcgccgcgccgaccgcctccgctc 232
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 cgccggcctcatcgcgctcggcca 313 |||||||||||| ||||||||||| Sbjct: 33587 cgccggcctcatggcgctcggcca 33564
>gb|AF176824.1|AF176824 Synechococcus PCC7942 plasmid pANL O-acetylserine(thiol)-lyase SrpD (srpD), gamma-glutamyltranspeptidase SrpE (srpE), alpha-helical coiled-coil protein SrpF (srpF), SrpJ (srpJ), ATP-binding protein of ABC transporter SrpK (srpK), membrane lipoprotein SrpL (srpL), and cytoplasmic membrane protein SrpM (srpM) genes, complete cds Length = 11239 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cgggcaacaccggcattggc 179 |||||||||||||||||||| Sbjct: 317 cgggcaacaccggcattggc 336
>gb|AC109197.9| Mus musculus chromosome 1, clone RP23-309A8, complete sequence Length = 255342 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 467 gctggagcggctgggcctcgacga 490 ||||||| |||||||||||||||| Sbjct: 150407 gctggagaggctgggcctcgacga 150430
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 gccgccgacccgcagctcgccgccgcgc 402 ||||||| || ||||||||||||||||| Sbjct: 750874 gccgccgcccagcagctcgccgccgcgc 750901
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gcgctcggccacgacgtgca 322 |||||||||||||||||||| Sbjct: 1654206 gcgctcggccacgacgtgca 1654187
>gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complete sequence Length = 227073 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 atcctgttcaccaactctga 445 |||||||||||||||||||| Sbjct: 87112 atcctgttcaccaactctga 87131
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 tccttgtggccaggttcggcctcg 231 |||||||||||| ||||||||||| Sbjct: 1310577 tccttgtggccatgttcggcctcg 1310600
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 tcgccgccgacccgcagctcgccg 396 ||||||||| |||||||||||||| Sbjct: 92502 tcgccgccggcccgcagctcgccg 92479
>gb|U75434.1|SAU75434 Streptomyces actuosus 23S rRNA methyltransferase (nshR) and NshA (nshA) genes, complete cds Length = 3444 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gatcgccgccgacccgcagc 390 |||||||||||||||||||| Sbjct: 2409 gatcgccgccgacccgcagc 2390
>gb|CP000101.1| Synechococcus elongatus PCC 7942 plasmid 1, complete sequence Length = 46366 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cgggcaacaccggcattggc 179 |||||||||||||||||||| Sbjct: 14635 cgggcaacaccggcattggc 14654 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,422,228 Number of Sequences: 3902068 Number of extensions: 3422228 Number of successful extensions: 79872 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72940 Number of HSP's gapped (non-prelim): 6917 length of query: 549 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 526 effective length of database: 17,143,297,704 effective search space: 9017374592304 effective search space used: 9017374592304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
