ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2... 29 2.9
2AAS_ECO57 (Q8X6J8) AAS bifunctional protein [Includes: 2-acylgly... 28 6.6

>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1081

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 95  PLIHALRPLLGSGKHAGVACDSWVLGVEAHN 187
           PLI   RPL+G+G  A +A DS ++ +   N
Sbjct: 552 PLIFPERPLVGTGLEAQIAKDSGIMAISRSN 582



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>AAS_ECO57 (Q8X6J8) AAS bifunctional protein [Includes:|
           2-acylglycerophosphoethanolamine acyltransferase (EC
           2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid
           O-acyltransferase) (2-acyl-GPE acyltransferase);
           Acyl-[acyl-carrier-protein] synthetase (EC 6
          Length = 719

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 116 PLLGSGKHAGVACDSWVLGVEAHN 187
           PLLGSGK   V   SWV  VE H+
Sbjct: 695 PLLGSGKPDFVTLKSWVDEVEQHD 718


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,277,236
Number of Sequences: 219361
Number of extensions: 240361
Number of successful extensions: 791
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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