ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart44e11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ628169.1| Hordeum vulgare bci3 gene for putative acid phosphatase Length = 2748 Score = 184 bits (93), Expect = 7e-44 Identities = 171/196 (87%), Gaps = 6/196 (3%) Strand = Plus / Plus Query: 8 gctctcctcgcggnctcatgcagcgcatgggaggtcaacatccgcatgccgacgtcggcg 67 |||||||| |||| ||||| ||||||||||||||| ||||||| |||||| |||||||| Sbjct: 1841 gctctcctggcggcctcatccagcgcatgggaggtgaacatccagatgccggcgtcggcg 1900 Query: 68 gcggacgtggacgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggc 127 || ||||||||| || |||| | ||||| |||||||||||||||||||| |||||| Sbjct: 1901 gc---cgtggacgatgctgtgg---caccgctcatccacgcgctgcggccgctcctgggc 1954 Query: 128 tccggcaagcacgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaac 187 ||||||||||| ||||| ||||||||||| |||||| |||||| ||||||||| ||||| Sbjct: 1955 tccggcaagcaagccggcgtggcgtgcgatagctggcggctgggcgtggaggcgtacaac 2014 Query: 188 gtgcgggactggaaga 203 |||||||||||||||| Sbjct: 2015 gtgcgggactggaaga 2030
>emb|AJ250282.2|HVU250282 Hordeum vulgare partial mRNA for putative acid phosphatase (bci-3 gene) Length = 1152 Score = 184 bits (93), Expect = 7e-44 Identities = 171/196 (87%), Gaps = 6/196 (3%) Strand = Plus / Plus Query: 8 gctctcctcgcggnctcatgcagcgcatgggaggtcaacatccgcatgccgacgtcggcg 67 |||||||| |||| ||||| ||||||||||||||| ||||||| |||||| |||||||| Sbjct: 245 gctctcctggcggcctcatccagcgcatgggaggtgaacatccagatgccggcgtcggcg 304 Query: 68 gcggacgtggacgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggc 127 || ||||||||| || |||| | ||||| |||||||||||||||||||| |||||| Sbjct: 305 gc---cgtggacgatgctgtgg---caccgctcatccacgcgctgcggccgctcctgggc 358 Query: 128 tccggcaagcacgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaac 187 ||||||||||| ||||| ||||||||||| |||||| |||||| ||||||||| ||||| Sbjct: 359 tccggcaagcaagccggcgtggcgtgcgatagctggcggctgggcgtggaggcgtacaac 418 Query: 188 gtgcgggactggaaga 203 |||||||||||||||| Sbjct: 419 gtgcgggactggaaga 434
>gb|AC145271.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1140B01, complete sequence Length = 135184 Score = 93.7 bits (47), Expect = 2e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 79 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 133 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 92304 cgaggccgtggtggcgccgctcatccacgcgctgcggccgctgctgggctccggc 92250 Score = 85.7 bits (43), Expect = 5e-14 Identities = 52/55 (94%) Strand = Plus / Minus Query: 79 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 133 |||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 105926 cgaggccgtggtggcgccgatcatccacgcgctgcggccgctgctgggctccggc 105872 Score = 71.9 bits (36), Expect = 7e-10 Identities = 48/52 (92%) Strand = Plus / Minus Query: 139 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtg 190 |||||| |||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 92232 cgccggcgtggcgtgcgacagctggaggctggcggtggaggcgcacaacgtg 92181 Score = 69.9 bits (35), Expect = 3e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 79 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 133 |||||| |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct: 84028 cgaggctgtggtggcgccgatcatacacgcgctacggccgctgctgggctccggc 83974 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 139 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtg 190 |||||| ||||| |||||||||||| |||||| |||||||||||||||||| Sbjct: 83956 cgccggcgtggcctgcgacagctggaggctgggcgtggaggcgcacaacgtg 83905 Score = 56.0 bits (28), Expect = 4e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 139 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtg 190 |||||| |||||||||||||||||| ||| || |||||||| ||||||||| Sbjct: 105854 cgccggcgtggcgtgcgacagctggaggctaggcgtggaggcacacaacgtg 105803
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 93.7 bits (47), Expect = 2e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 79 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 133 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 5559095 cgaggccgtggtggcgccgctcatccacgcgctgcggccgctgctgggctccggc 5559041 Score = 85.7 bits (43), Expect = 5e-14 Identities = 52/55 (94%) Strand = Plus / Minus Query: 79 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 133 |||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 5572717 cgaggccgtggtggcgccgatcatccacgcgctgcggccgctgctgggctccggc 5572663 Score = 71.9 bits (36), Expect = 7e-10 Identities = 48/52 (92%) Strand = Plus / Minus Query: 139 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtg 190 |||||| |||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 5559023 cgccggcgtggcgtgcgacagctggaggctggcggtggaggcgcacaacgtg 5558972 Score = 69.9 bits (35), Expect = 3e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 79 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 133 |||||| |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct: 5550819 cgaggctgtggtggcgccgatcatacacgcgctacggccgctgctgggctccggc 5550765 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 139 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtg 190 |||||| ||||| |||||||||||| |||||| |||||||||||||||||| Sbjct: 5550747 cgccggcgtggcctgcgacagctggaggctgggcgtggaggcgcacaacgtg 5550696 Score = 56.0 bits (28), Expect = 4e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 139 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtg 190 |||||| |||||||||||||||||| ||| || |||||||| ||||||||| Sbjct: 5572645 cgccggcgtggcgtgcgacagctggaggctaggcgtggaggcacacaacgtg 5572594
>dbj|AK061404.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A01, full insert sequence Length = 1131 Score = 85.7 bits (43), Expect = 5e-14 Identities = 52/55 (94%) Strand = Plus / Plus Query: 79 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 133 |||||| |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 145 cgaggccgtggtggcgccgatcatccacgcgctgcggccgctgctgggctccggc 199 Score = 56.0 bits (28), Expect = 4e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 139 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtg 190 |||||| |||||||||||||||||| ||| || |||||||| ||||||||| Sbjct: 217 cgccggcgtggcgtgcgacagctggaggctaggcgtggaggcacacaacgtg 268
>dbj|AK110669.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-F12, full insert sequence Length = 953 Score = 69.9 bits (35), Expect = 3e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 79 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 133 |||||| |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct: 172 cgaggctgtggtggcgccgatcatacacgcgctacggccgctgctgggctccggc 226 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 139 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtg 190 |||||| ||||| |||||||||||| |||||| |||||||||||||||||| Sbjct: 244 cgccggcgtggcctgcgacagctggaggctgggcgtggaggcgcacaacgtg 295
>dbj|AK066719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082K18, full insert sequence Length = 2143 Score = 69.9 bits (35), Expect = 3e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 79 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 133 |||||| |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct: 170 cgaggctgtggtggcgccgatcatacacgcgctacggccgctgctgggctccggc 224 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 139 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtg 190 |||||| ||||| |||||||||||| |||||| |||||||||||||||||| Sbjct: 242 cgccggcgtggcctgcgacagctggaggctgggcgtggaggcgcacaacgtg 293
>dbj|AK059825.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-F04, full insert sequence Length = 1076 Score = 69.9 bits (35), Expect = 3e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 79 cgaggcggtggtggcgccgctgatccacgcgctgcggccgctgctgggctccggc 133 |||||| |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct: 172 cgaggctgtggtggcgccgatcatacacgcgctacggccgctgctgggctccggc 226 Score = 63.9 bits (32), Expect = 2e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 139 cgccggagtggcgtgcgacagctgggtgctgggggtggaggcgcacaacgtg 190 |||||| ||||| |||||||||||| |||||| |||||||||||||||||| Sbjct: 244 cgccggcgtggcctgcgacagctggaggctgggcgtggaggcgcacaacgtg 295
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Plus Query: 87 tggtggcgccgctgatccacgcgctgcggccgc 119 ||||||||||||||||| ||||||||| ||||| Sbjct: 1077692 tggtggcgccgctgatcgacgcgctgctgccgc 1077724
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 46.1 bits (23), Expect = 0.042 Identities = 23/23 (100%) Strand = Plus / Minus Query: 83 gcggtggtggcgccgctgatcca 105 ||||||||||||||||||||||| Sbjct: 141389 gcggtggtggcgccgctgatcca 141367
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.17 Identities = 28/30 (93%) Strand = Plus / Plus Query: 109 gctgcggccgctgctgggctccggcaagca 138 |||||||||||||||||||| || |||||| Sbjct: 1858796 gctgcggccgctgctgggcttcgacaagca 1858825 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Plus Query: 55 gccgacgtcggcggcggacgtg 76 |||||||||||||||||||||| Sbjct: 90574 gccgacgtcggcggcggacgtg 90595
>ref|XM_477962.1| Oryza sativa (japonica cultivar-group), mRNA Length = 501 Score = 42.1 bits (21), Expect = 0.66 Identities = 27/29 (93%) Strand = Plus / Plus Query: 82 ggcggtggtggcgccgctgatccacgcgc 110 |||||||| ||||||||||||| |||||| Sbjct: 57 ggcggtggcggcgccgctgatcgacgcgc 85
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 0.66 Identities = 24/25 (96%) Strand = Plus / Minus Query: 110 ctgcggccgctgctgggctccggca 134 |||||||||||||||||||| |||| Sbjct: 4476736 ctgcggccgctgctgggctcgggca 4476712
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 0.66 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 gcgctgcggccgctgctgggctccg 131 ||||||||||||||||||| ||||| Sbjct: 966839 gcgctgcggccgctgctggactccg 966815
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.66 Identities = 27/29 (93%) Strand = Plus / Plus Query: 82 ggcggtggtggcgccgctgatccacgcgc 110 |||||||| ||||||||||||| |||||| Sbjct: 15937457 ggcggtggcggcgccgctgatcgacgcgc 15937485
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 ccacgcgctgcggccgctgct 123 ||||||||||||||||||||| Sbjct: 7463181 ccacgcgctgcggccgctgct 7463201
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 gcggcggacgtggacgaggcg 85 ||||||||||||||||||||| Sbjct: 4785906 gcggcggacgtggacgaggcg 4785886
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13 Length = 179669 Score = 42.1 bits (21), Expect = 0.66 Identities = 27/29 (93%) Strand = Plus / Plus Query: 82 ggcggtggtggcgccgctgatccacgcgc 110 |||||||| ||||||||||||| |||||| Sbjct: 176971 ggcggtggcggcgccgctgatcgacgcgc 176999
>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0040K22 Length = 155832 Score = 42.1 bits (21), Expect = 0.66 Identities = 27/29 (93%) Strand = Plus / Plus Query: 82 ggcggtggtggcgccgctgatccacgcgc 110 |||||||| ||||||||||||| |||||| Sbjct: 18859 ggcggtggcggcgccgctgatcgacgcgc 18887
>dbj|AK112061.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G08, full insert sequence Length = 903 Score = 42.1 bits (21), Expect = 0.66 Identities = 27/29 (93%) Strand = Plus / Plus Query: 82 ggcggtggtggcgccgctgatccacgcgc 110 |||||||| ||||||||||||| |||||| Sbjct: 123 ggcggtggcggcgccgctgatcgacgcgc 151
>ref|XM_508594.1| PREDICTED: Pan troglodytes similar to KIAA1394 protein (LOC451368), mRNA Length = 4191 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 gacgaggcggtggtggcgccgctg 100 ||||||||||||| |||||||||| Sbjct: 1987 gacgaggcggtggcggcgccgctg 2010
>ref|NM_188032.1| Oryza sativa (japonica cultivar-group), Ozsa8452 predicted mRNA Length = 1767 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gccgacgtcggcggcggacg 74 |||||||||||||||||||| Sbjct: 1617 gccgacgtcggcggcggacg 1636
>ref|NM_188686.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 369 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 cgaggcggtggtggcgccgc 98 |||||||||||||||||||| Sbjct: 304 cgaggcggtggtggcgccgc 285
>ref|XM_482470.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1806 Score = 40.1 bits (20), Expect = 2.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcggtggtggcg 94 |||||| ||||||||||| |||||||| |||| Sbjct: 275 cggcggaggacgtggacgcggcggtggcggcg 306
>ref|XM_469899.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3159 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cgtcggcggcggacgtggac 79 |||||||||||||||||||| Sbjct: 395 cgtcggcggcggacgtggac 414
>ref|NM_196414.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0060A14.4), mRNA Length = 537 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcgg 86 ||||||||| |||||||||||||| Sbjct: 86 cggcggcggtcgtggacgaggcgg 109
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ccgctgatccacgcgctgcggccg 118 ||||||||||||||||||| |||| Sbjct: 106983 ccgctgatccacgcgctgccgccg 107006
>gb|AY492273.1| Corynebacterium vitaeruminis strain CIP 827 RpoB (rpoB) gene, partial cds Length = 3296 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 gcacgccggagtggcgtgcg 155 |||||||||||||||||||| Sbjct: 127 gcacgccggagtggcgtgcg 146
>gb|AY658948.1| Synthetic construct Peudomonas aeruginosa clone FLH046900.01F PA1060 gene, partial cds Length = 906 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cacgcgctgcggccgctgctgggc 127 ||||||| |||||||||||||||| Sbjct: 439 cacgcgccgcggccgctgctgggc 462
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cgtcggcggcggacgtggac 79 |||||||||||||||||||| Sbjct: 31415004 cgtcggcggcggacgtggac 31415023
>ref|XM_756140.1| Ustilago maydis 521 hypothetical protein (UM05086.1) partial mRNA Length = 5505 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ggcggtggtggcgccgctga 101 |||||||||||||||||||| Sbjct: 2532 ggcggtggtggcgccgctga 2513
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0044A10, from chromosome 10, complete sequence Length = 173374 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcgg 86 ||||||||| |||||||||||||| Sbjct: 171752 cggcggcggtcgtggacgaggcgg 171775
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 cgtcggcggcggacgtggac 79 |||||||||||||||||||| Sbjct: 80796 cgtcggcggcggacgtggac 80777
>gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0044I14, from Chromosome 10, complete sequence Length = 63167 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 cggcggcggacgtggacgaggcgg 86 ||||||||| |||||||||||||| Sbjct: 4790 cggcggcggtcgtggacgaggcgg 4767
>emb|BX908809.1| Neurospora crassa DNA linkage group IV Cosmid contig 29E8 Length = 197698 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 ggacgtggacgaggcggtggtggc 93 |||||||| ||||||||||||||| Sbjct: 4142 ggacgtggtcgaggcggtggtggc 4119
>dbj|AK127616.1| Homo sapiens cDNA FLJ45714 fis, clone FEKID2002637, highly similar to Serine/threonine protein phosphatase PP1-alpha 1 catalytic subunit (EC 3.1.3.16) Length = 1685 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 gacgaggcggtggtggcgccgctg 100 ||||||||||||| |||||||||| Sbjct: 111 gacgaggcggtggcggcgccgctg 88
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cgctgcggccgctgctgggc 127 |||||||||||||||||||| Sbjct: 1724968 cgctgcggccgctgctgggc 1724987 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 catgccgacgtcggcggcgg 71 |||||||||||||||||||| Sbjct: 27426 catgccgacgtcggcggcgg 27407
>ref|XM_941962.1| PREDICTED: Homo sapiens KIAA1394 protein, transcript variant 3 (KIAA1394), mRNA Length = 5056 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 gacgaggcggtggtggcgccgctg 100 ||||||||||||| |||||||||| Sbjct: 2682 gacgaggcggtggcggcgccgctg 2705
>ref|XM_208522.5| PREDICTED: Homo sapiens KIAA1394 protein, transcript variant 1 (KIAA1394), mRNA Length = 5055 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 gacgaggcggtggtggcgccgctg 100 ||||||||||||| |||||||||| Sbjct: 2682 gacgaggcggtggcggcgccgctg 2705
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ggacgaggcggtggtggcgc 95 |||||||||||||||||||| Sbjct: 125683 ggacgaggcggtggtggcgc 125664
>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence Length = 151343 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcgg 86 ||||||||| |||||||||||||| Sbjct: 17880 cggcggcggtcgtggacgaggcgg 17903
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 84 cggtggtggcgccgctgatccacg 107 ||||||||||| |||||||||||| Sbjct: 429845 cggtggtggcggcgctgatccacg 429822
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcgg 86 |||||||||||||||||| ||||| Sbjct: 66182 cggcggcggacgtggacgcggcgg 66205
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcgg 86 ||||||||| |||||||||||||| Sbjct: 13325503 cggcggcggtcgtggacgaggcgg 13325526
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 2.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcggtggtggcg 94 |||||| ||||||||||| |||||||| |||| Sbjct: 20372954 cggcggaggacgtggacgcggcggtggcggcg 20372985
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cgtcggcggcggacgtggac 79 |||||||||||||||||||| Sbjct: 31505520 cgtcggcggcggacgtggac 31505539
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gccgacgtcggcggcggacg 74 |||||||||||||||||||| Sbjct: 9253184 gccgacgtcggcggcggacg 9253165 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgaggcggtggtggcgccgc 98 |||||||||||||||||||| Sbjct: 7627981 cgaggcggtggtggcgccgc 7628000
>gb|AE004950.1| Pseudomonas aeruginosa PAO1, section 511 of 529 of the complete genome Length = 11213 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cgcgctgcggccgctgctgg 125 |||||||||||||||||||| Sbjct: 5973 cgcgctgcggccgctgctgg 5954
>gb|AE004505.1| Pseudomonas aeruginosa PAO1, section 66 of 529 of the complete genome Length = 11421 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gccgctgatccacgcgctgc 113 |||||||||||||||||||| Sbjct: 511 gccgctgatccacgcgctgc 530
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086P08 Length = 145312 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgaggcggtggtggcgccgc 98 |||||||||||||||||||| Sbjct: 38557 cgaggcggtggtggcgccgc 38576
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0667A10 Length = 152237 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gccgacgtcggcggcggacg 74 |||||||||||||||||||| Sbjct: 29778 gccgacgtcggcggcggacg 29759
>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01 Length = 168655 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gccgacgtcggcggcggacg 74 |||||||||||||||||||| Sbjct: 153566 gccgacgtcggcggcggacg 153547
>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056L09 Length = 152910 Score = 40.1 bits (20), Expect = 2.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcggtggtggcg 94 |||||| ||||||||||| |||||||| |||| Sbjct: 120702 cggcggaggacgtggacgcggcggtggcggcg 120733
>emb|X87247.1|PVULSGENE Pseudorabies virus UL21, UL20 & UL19 genes Length = 3797 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcgg 86 |||||||||||||||||| ||||| Sbjct: 2450 cggcggcggacgtggacgcggcgg 2473
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 40.1 bits (20), Expect = 2.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcggtggtggcg 94 |||||| ||||||||||| |||||||| |||| Sbjct: 3584 cggcggaggacgtggacgcggcggtggcggcg 3615
>dbj|AK109991.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-E07, full insert sequence Length = 3419 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 ggacgaggcggtggtggcgc 95 |||||||||||||||||||| Sbjct: 2514 ggacgaggcggtggtggcgc 2533
>dbj|AK071221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C02, full insert sequence Length = 1807 Score = 40.1 bits (20), Expect = 2.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcggtggtggcg 94 |||||| ||||||||||| |||||||| |||| Sbjct: 275 cggcggaggacgtggacgcggcggtggcggcg 306
>dbj|AP003419.3| Homo sapiens genomic DNA, chromosome 11 clone:CTC-1337H24, complete sequence Length = 168565 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 gacgaggcggtggtggcgccgctg 100 ||||||||||||| |||||||||| Sbjct: 101538 gacgaggcggtggcggcgccgctg 101561
>dbj|AB096083.1| Oryza sativa (japonica cultivar-group) BADH2 mRNA for betaine aldehyde dehydrogenase, complete cds Length = 1512 Score = 40.1 bits (20), Expect = 2.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcggtggtggcg 94 |||||| ||||||||||| |||||||| |||| Sbjct: 128 cggcggaggacgtggacgcggcggtggcggcg 159
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcgg 86 ||||||||| |||||||||||||| Sbjct: 13332843 cggcggcggtcgtggacgaggcgg 13332866
>emb|AL844164.17| Mouse DNA sequence from clone RP23-300I3 on chromosome 4, complete sequence Length = 209214 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cagctgggtgctgggggtgg 176 |||||||||||||||||||| Sbjct: 36203 cagctgggtgctgggggtgg 36184
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 ggacgtggacgaggcggtggtggc 93 |||||||| ||||||||||||||| Sbjct: 1558061 ggacgtggccgaggcggtggtggc 1558084
>gb|L00676.1|SH1ULGNS Pseudorabies virus (Suid herpesvirus 1) UL18 through UL21 genes, complete cds and UL15 gene, 3' end Length = 9382 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cggcggcggacgtggacgaggcgg 86 |||||||||||||||||| ||||| Sbjct: 2450 cggcggcggacgtggacgcggcgg 2473
>gb|M95285.1|SH1UL2XA Suid herpesvirus 1 genes homologous to HSV1 UL20 and UL21 genes, complete cds; and major capsid protein gene, 3' end Length = 2510 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 cggcggcggacgtggacgaggcgg 86 |||||||||||||||||| ||||| Sbjct: 730 cggcggcggacgtggacgcggcgg 707
>dbj|AB037815.1| Homo sapiens mRNA for KIAA1394 protein, partial cds Length = 5065 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 gacgaggcggtggtggcgccgctg 100 ||||||||||||| |||||||||| Sbjct: 2688 gacgaggcggtggcggcgccgctg 2711 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,324,649 Number of Sequences: 3902068 Number of extensions: 1324649 Number of successful extensions: 120625 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116963 Number of HSP's gapped (non-prelim): 3660 length of query: 205 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 183 effective length of database: 17,147,199,772 effective search space: 3137937558276 effective search space used: 3137937558276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
