ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart44e07 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 126 bits (316), Expect = 5e-29 Identities = 64/117 (54%), Positives = 81/117 (69%), Gaps = 1/117 (0%) Frame = +2 Query: 203 GQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVIAGTSTGALVASM 379 G+++TVLSIDGGGI+G+IP+TIL LE +LQE+D DAR+ADYFDVI GTSTG L+ +M Sbjct: 26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAM 85 Query: 380 LAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLTPIGNLFGAVNGPKYDGKFL 550 + P E RP AKDI FY ++GPKIF G++ GPKYDGK+L Sbjct: 86 ITTPNETNRPFAAAKDIVPFYFEHGPKIFQSS------------GSIFGPKYDGKYL 130
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 126 bits (316), Expect = 5e-29 Identities = 67/129 (51%), Positives = 86/129 (66%), Gaps = 1/129 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 343 A T TC + G+++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCA--TLGEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLTPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIF 121 Query: 524 GPKYDGKFL 550 GP+YDGK+L Sbjct: 122 GPRYDGKYL 130
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 122 bits (307), Expect = 5e-28 Identities = 66/129 (51%), Positives = 84/129 (65%), Gaps = 1/129 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 343 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 7 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 64 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLTPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 65 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIF 112 Query: 524 GPKYDGKFL 550 GP+YDGK+L Sbjct: 113 GPRYDGKYL 121
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 121 bits (304), Expect = 1e-27 Identities = 66/129 (51%), Positives = 83/129 (64%), Gaps = 1/129 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 343 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLTPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSII 121 Query: 524 GPKYDGKFL 550 GP YDGK+L Sbjct: 122 GPMYDGKYL 130
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 121 bits (304), Expect = 1e-27 Identities = 66/129 (51%), Positives = 83/129 (64%), Gaps = 1/129 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 343 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLTPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIL 121 Query: 524 GPKYDGKFL 550 GP YDGK+L Sbjct: 122 GPMYDGKYL 130
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 38.1 bits (87), Expect = 0.018 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = +2 Query: 218 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 373 +L +DGGG++GLI +L +E D FD +AGTSTG ++A Sbjct: 480 LLCLDGGGVKGLIIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 525
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +2 Query: 218 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 373 +L +DGGG++GL+ +L +E D FD +AGTSTG ++A Sbjct: 426 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 471
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +2 Query: 218 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 373 +L +DGGG++GL+ +L +E D FD +AGTSTG ++A Sbjct: 425 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 470
>RPOZ_MYCLE (Q9CCQ6) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 110 Score = 34.7 bits (78), Expect = 0.20 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = -1 Query: 571 EALDLVVQELAVVLGTVHGAEQVPDRGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLA 392 E LD V + A+V+ A Q+ D + + EY+GP+VE GL+E+PL +A Sbjct: 42 ELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEP------GLQEKPLSIA 95
>RPOZ_MYCTU (P66721) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 110 Score = 33.9 bits (76), Expect = 0.33 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = -1 Query: 571 EALDLVVQELAVVLGTVHGAEQVPDRGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLA 392 E LD V + A+V+ A Q+ D + + EY+GP+VE GL+E+PL +A Sbjct: 42 ELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEP------GLQEKPLSIA 95
>RPOZ_MYCBO (P66722) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 110 Score = 33.9 bits (76), Expect = 0.33 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = -1 Query: 571 EALDLVVQELAVVLGTVHGAEQVPDRGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLA 392 E LD V + A+V+ A Q+ D + + EY+GP+VE GL+E+PL +A Sbjct: 42 ELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEP------GLQEKPLSIA 95
>YLBK_BACSU (O34731) Hypothetical UPF0028 protein ylbK| Length = 260 Score = 30.8 bits (68), Expect = 2.8 Identities = 21/56 (37%), Positives = 28/56 (50%) Frame = +2 Query: 221 LSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVASMLAA 388 L++ GG RGL +L+ L E+D +IAG+S GALV S AA Sbjct: 8 LALGSGGARGLAHLGVLSSLHKHQIEVD-----------MIAGSSMGALVGSFYAA 52
>VG75_ICHV1 (Q00129) Hypothetical gene 75 protein| Length = 423 Score = 29.6 bits (65), Expect = 6.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 149 MCSHGHAPTCVTCPPPSQGQLITV 220 +CSHG +C+T PP QG T+ Sbjct: 139 LCSHGVTASCITMGPPVQGMPETI 162
>ACRO_RAT (P29293) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light| chain; Acrosin heavy chain] Length = 437 Score = 29.6 bits (65), Expect = 6.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 192 GGQVTHVGAWPWLHMVSLAPSHCS 121 GGQ + GAWPW+ + + SH S Sbjct: 45 GGQTSSPGAWPWMVSLQIFTSHNS 68
>YK69_YEAST (P36165) Hypothetical 102.7 kDa protein in PRP16-SRP40 intergenic| region Length = 910 Score = 29.6 bits (65), Expect = 6.3 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 3/115 (2%) Frame = +2 Query: 215 TVLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVASMLAAPG 394 T L + GGG GL +L L ELD VI+G+S GA+VAS+L+ Sbjct: 280 TALVLSGGGTFGLFHIGVLGTLF----ELDLLPR-------VISGSSAGAIVASILSVHH 328 Query: 395 ENKRPLFQAKDINK---FYLDNGPKIFPQRSWGFLTPIGNLFGAVNGPKYDGKFL 550 + + P+ ++K + D+ K S L I F NG +D K L Sbjct: 329 KEEIPVLLNHILDKEFNIFKDDKQK---SESENLLIKISRFF--KNGTWFDNKHL 378
>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3| Length = 1620 Score = 29.3 bits (64), Expect = 8.2 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -2 Query: 423 LAWKSGRLFSPGAASMDATSAPVLVPAITSK*SAMRASGPSSSWSLDSRQ 274 L W RL P AS T P P+ S + + + GPS WSL R+ Sbjct: 1487 LQWPPPRLPGPPPASPAPTEGPR--PSRPSGPALLNSEGPSGKWSLGGRK 1534 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,279,019 Number of Sequences: 219361 Number of extensions: 1194829 Number of successful extensions: 4182 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4041 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4167 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
