>dbj|AK058988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F01, full
           insert sequence
          Length = 1528

 Score =  192 bits (97), Expect = 6e-46
 Identities = 199/233 (85%)
 Strand = Plus / Plus

                                                                       
Query: 132 atgtcgatccagggccagctcctcgaggtcagagtgacggggtgcaggaagctgcgggac 191
           |||||||| || |||||| ||||||| |||||||| || ||||||||||||||| |||||
Sbjct: 1   atgtcgatacaaggccagatcctcgaagtcagagtcactgggtgcaggaagctgagggac 60

                                                                       
Query: 192 accgagttcttctcgcgccaggacccctacgtcatcatcgactacgccaacaacaagctg 251
           || ||||||||| |||| ||||| |||||||||  |||||| || |||| ||||||| | 
Sbjct: 61  acggagttcttcacgcggcaggatccctacgtctgcatcgagtatgccaccaacaagttc 120

                                                                       
Query: 252 cgcaccaggacatgcaccgatggaggaaggaacccgtcctttgacgagaagtttcatata 311
           |||||| | || ||||||||||| |||||||||||  | |||||||||||||||||||||
Sbjct: 121 cgcacccgcacctgcaccgatgggggaaggaaccctacttttgacgagaagtttcatata 180

                                                                
Query: 312 ccactcatcgaggggctccgtgagctgagtatcaacgtgtggaacagcaacac 364
           || ||||| |||||||| |||||||| |   |||  |||||||||||||||||
Sbjct: 181 cctctcattgaggggcttcgtgagctaaccgtcacagtgtggaacagcaacac 233

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                            
Query: 270      gatggaggaaggaacccgtcctttgacgagaagtttcatataccactcatcgaggggctc 329
                ||||| |||||||||||  | ||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 25581794 gatgggggaaggaaccctacttttgacgagaagtttcatatacctctcattgaggggctt 25581735

                                                   
Query: 330      cgtgagctgagtatcaacgtgtggaacagcaacac 364
                |||||||| |   |||  |||||||||||||||||
Sbjct: 25581734 cgtgagctaaccgtcacagtgtggaacagcaacac 25581700



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                            
Query: 171      gggtgcaggaagctgcgggacaccgagttcttctcgcgccaggacccctacgtcatcatc 230
                ||||||||||||||| ||||||| ||||||||| |||| ||||| |||||||||  ||||
Sbjct: 25583511 gggtgcaggaagctgagggacacggagttcttcacgcggcaggatccctacgtctgcatc 25583452

                                                        
Query: 231      gactacgccaacaacaagctgcgcaccaggacatgcaccg 270
                || || |||| ||||||| | |||||| | || |||||||
Sbjct: 25583451 gagtatgccaccaacaagttccgcacccgcacctgcaccg 25583412

>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0523F01
          Length = 146419

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                          
Query: 270    gatggaggaaggaacccgtcctttgacgagaagtttcatataccactcatcgaggggctc 329
              ||||| |||||||||||  | ||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 100111 gatgggggaaggaaccctacttttgacgagaagtttcatatacctctcattgaggggctt 100052

                                                 
Query: 330    cgtgagctgagtatcaacgtgtggaacagcaacac 364
              |||||||| |   |||  |||||||||||||||||
Sbjct: 100051 cgtgagctaaccgtcacagtgtggaacagcaacac 100017



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                          
Query: 171    gggtgcaggaagctgcgggacaccgagttcttctcgcgccaggacccctacgtcatcatc 230
              ||||||||||||||| ||||||| ||||||||| |||| ||||| |||||||||  ||||
Sbjct: 101828 gggtgcaggaagctgagggacacggagttcttcacgcggcaggatccctacgtctgcatc 101769

                                                      
Query: 231    gactacgccaacaacaagctgcgcaccaggacatgcaccg 270
              || || |||| ||||||| | |||||| | || |||||||
Sbjct: 101768 gagtatgccaccaacaagttccgcacccgcacctgcaccg 101729

>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0458E02
          Length = 154458

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                        
Query: 270  gatggaggaaggaacccgtcctttgacgagaagtttcatataccactcatcgaggggctc 329
            ||||| |||||||||||  | ||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 5239 gatgggggaaggaaccctacttttgacgagaagtttcatatacctctcattgaggggctt 5180

                                               
Query: 330  cgtgagctgagtatcaacgtgtggaacagcaacac 364
            |||||||| |   |||  |||||||||||||||||
Sbjct: 5179 cgtgagctaaccgtcacagtgtggaacagcaacac 5145



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                        
Query: 171  gggtgcaggaagctgcgggacaccgagttcttctcgcgccaggacccctacgtcatcatc 230
            ||||||||||||||| ||||||| ||||||||| |||| ||||| |||||||||  ||||
Sbjct: 6956 gggtgcaggaagctgagggacacggagttcttcacgcggcaggatccctacgtctgcatc 6897

                                                    
Query: 231  gactacgccaacaacaagctgcgcaccaggacatgcaccg 270
            || || |||| ||||||| | |||||| | || |||||||
Sbjct: 6896 gagtatgccaccaacaagttccgcacccgcacctgcaccg 6857

>gb|AE009432.1| Agrobacterium tumefaciens str. C58 Ti plasmid, section 15 of 21 of
            the complete sequence
          Length = 6849

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 221  cgtcatcatcgactacgccaacaac 245
            |||||||||||||||||||| ||||
Sbjct: 5186 cgtcatcatcgactacgccatcaac 5162

>gb|AE007940.1| Agrobacterium tumefaciens str. C58 plasmid Ti, section 18 of 20 of
           the complete sequence
          Length = 12492

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 221 cgtcatcatcgactacgccaacaac 245
           |||||||||||||||||||| ||||
Sbjct: 532 cgtcatcatcgactacgccatcaac 508

>gb|AF010180.1| Agrobacterium tumefaciens plasmid pTiC58 TraI region, TraII region and
             acc operon, complete sequence; and unknown genes
          Length = 24708

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 221   cgtcatcatcgactacgccaacaac 245
             |||||||||||||||||||| ||||
Sbjct: 14969 cgtcatcatcgactacgccatcaac 14945

>dbj|AB016260.1| Agrobacterium tumefaciens plasmid pTi-SAKURA, complete sequence
          Length = 206479

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 221    cgtcatcatcgactacgccaacaac 245
              |||||||||||||||||||| ||||
Sbjct: 112416 cgtcatcatcgactacgccatcaac 112392

>dbj|AP002043.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJI6
          Length = 83912

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 3     cacggaccatcctttcgtcctcaag 27
             ||||||||||||||||||| |||||
Sbjct: 52255 cacggaccatcctttcgtcatcaag 52279

>gb|AC161043.9| Mus musculus chromosome 1, clone wi1-483A16, complete sequence
          Length = 31683

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  aacaccgatgacttcattgg 388
            ||||||||||||||||||||
Sbjct: 7936 aacaccgatgacttcattgg 7917

>gb|L41732.4|ABCLSDA Gluconacetobacter diazotrophicus levansucrase precursor (lsdA),
            levanase precursor (lsdB), pseudopilin G precursor
            (lsdG), prepilin peptidase and N-methyltransferase O
            (gspO), kinase E (lsdE), LsdF (lsdF), pseudopilin H
            precursor (lsdH), pseudopilin I precursor (lsdI),
            pseudopilin J precursor (lsdJ), LsdL (lsdL), LsdM (lsdM),
            and LsdN (lsdN) genes, complete cds; secretin D (lsdD)
            gene, partial cds; and unknown gene
          Length = 13897

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 206  gcgccaggacccctacgtcatcat 229
            ||||||||||||| ||||||||||
Sbjct: 7444 gcgccaggaccccgacgtcatcat 7467

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   ccgcgccgcccgcccatgtcgatc 140
             ||||||||||||||| ||||||||
Sbjct: 83170 ccgcgccgcccgcccgtgtcgatc 83193

>emb|CT025601.7| Mouse DNA sequence from clone RP23-424B7 on chromosome 17, complete
            sequence
          Length = 197841

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  cagggccagctcctcgaggt 160
            ||||||||||||||||||||
Sbjct: 8076 cagggccagctcctcgaggt 8095

>gb|BC032721.1| Homo sapiens HIR histone cell cycle regulation defective homolog A
           (S. cerevisiae), mRNA (cDNA clone IMAGE:5505105),
           containing frame-shift errors
          Length = 2188

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tcctcccgcgccgcccgccc 131
           ||||||||||||||||||||
Sbjct: 177 tcctcccgcgccgcccgccc 158

>gb|AC005816.6| Mus musculus strain 129/Sv clone ct7-326b16 map 16, complete sequence
          Length = 136687

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tcctcccgcgccgcccgccc 131
             ||||||||||||||||||||
Sbjct: 99213 tcctcccgcgccgcccgccc 99194

>emb|X92590.1|MMHIRAPRT M.musculus mRNA for HIRA protein
          Length = 4018

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tcctcccgcgccgcccgccc 131
           ||||||||||||||||||||
Sbjct: 148 tcctcccgcgccgcccgccc 129

>emb|X75295.1|MMTUPLE1 M.musculus TUP1-like enhancer of split gene 1 (TUPLE1) mRNA
          Length = 1991

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tcctcccgcgccgcccgccc 131
           ||||||||||||||||||||
Sbjct: 151 tcctcccgcgccgcccgccc 132

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 117     ccgcgccgcccgcccatgtcgatc 140
               ||||||||||||||| ||||||||
Sbjct: 1478724 ccgcgccgcccgcccgtgtcgatc 1478747

>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25, complete
              sequence
          Length = 216800

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    aacaccgatgacttcattgg 388
              ||||||||||||||||||||
Sbjct: 105647 aacaccgatgacttcattgg 105666

>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25,
              complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    aacaccgatgacttcattgg 388
              ||||||||||||||||||||
Sbjct: 140272 aacaccgatgacttcattgg 140253

>emb|X75296.1|HSTUPLE1 H.sapiens TUP1-like enhancer of split gene 1 (TUPLE1) mRNA
          Length = 3420

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tcctcccgcgccgcccgccc 131
           ||||||||||||||||||||
Sbjct: 146 tcctcccgcgccgcccgccc 127

>gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence
          Length = 157430

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   tcctcccgcgccgcccgccc 131
             ||||||||||||||||||||
Sbjct: 24600 tcctcccgcgccgcccgccc 24619

>gb|AC079222.17| Mus musculus chromosome 1, clone RP22-292L24, complete sequence
          Length = 159700

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    aacaccgatgacttcattgg 388
              ||||||||||||||||||||
Sbjct: 117422 aacaccgatgacttcattgg 117441

>gb|AC003062.2| Mouse Chromosome 16 Region Syntenic to DGCR BAC Clone b264n1, complete
             sequence
          Length = 89743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tcctcccgcgccgcccgccc 131
             ||||||||||||||||||||
Sbjct: 20238 tcctcccgcgccgcccgccc 20219

>emb|BX255948.4| Zebrafish DNA sequence from clone CH211-250J1, complete sequence
          Length = 194257

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   gaacagcaacacaatcaaca 372
             ||||||||||||||||||||
Sbjct: 83494 gaacagcaacacaatcaaca 83475

>emb|BX248087.9| Zebrafish DNA sequence from clone CH211-191J22, complete sequence
          Length = 150181

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   gaacagcaacacaatcaaca 372
             ||||||||||||||||||||
Sbjct: 43996 gaacagcaacacaatcaaca 43977

>ref|XM_344057.2| PREDICTED: Rattus norvegicus similar to histone cell cycle
           regulation defective homolog A isoform 1 (LOC363849),
           mRNA
          Length = 4507

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tcctcccgcgccgcccgccc 131
           ||||||||||||||||||||
Sbjct: 634 tcctcccgcgccgcccgccc 615

>gb|AC133573.11| Mus musculus strain C57BL/6J clone rp23-139f17, complete sequence
          Length = 224138

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    tcctcccgcgccgcccgccc 131
              ||||||||||||||||||||
Sbjct: 113545 tcctcccgcgccgcccgccc 113564

>gb|BC039835.1| Homo sapiens HIR histone cell cycle regulation defective homolog A
           (S. cerevisiae), mRNA (cDNA clone MGC:48803
           IMAGE:5491361), complete cds
          Length = 4024

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tcctcccgcgccgcccgccc 131
           ||||||||||||||||||||
Sbjct: 134 tcctcccgcgccgcccgccc 115

>gb|AF065246.1|AF065246 Agrobacterium tumefaciens strain Chry5 plasmid pTiChry5 scl
            pseudogene, complete sequence; conjugal transfer
            regulatory protein (traR) and VirH (virH) genes, complete
            cds; and unknown gene
          Length = 4168

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 221  cgtcatcatcgactacgcca 240
            ||||||||||||||||||||
Sbjct: 1107 cgtcatcatcgactacgcca 1126

>gb|AC113264.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-357j7, complete
              sequence
          Length = 222589

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    tcctcccgcgccgcccgccc 131
              ||||||||||||||||||||
Sbjct: 114282 tcctcccgcgccgcccgccc 114263

>gb|AC124442.3| Mus musculus BAC clone RP24-178G20 from 7, complete sequence
          Length = 177517

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    tcaacgtgtggaacagcaac 362
              ||||||||||||||||||||
Sbjct: 107495 tcaacgtgtggaacagcaac 107476

>gb|BC060181.1| Mus musculus cDNA clone IMAGE:6831824, containing frame-shift
           errors
          Length = 4236

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tcctcccgcgccgcccgccc 131
           ||||||||||||||||||||
Sbjct: 345 tcctcccgcgccgcccgccc 326

>ref|NM_010435.2| Mus musculus histone cell cycle regulation defective homolog A (S.
           cerevisiae) (Hira), transcript variant 1, mRNA
          Length = 4553

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tcctcccgcgccgcccgccc 131
           ||||||||||||||||||||
Sbjct: 661 tcctcccgcgccgcccgccc 642

>emb|X91501.1|HSHIRAHGN H.sapiens HIRAHs gene
          Length = 1212

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tcctcccgcgccgcccgccc 131
           ||||||||||||||||||||
Sbjct: 346 tcctcccgcgccgcccgccc 327

>emb|X89887.1|HSHIRAGN1 Homo sapiens mRNA for WD repeat protein (HIRA)
          Length = 4018

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 tcctcccgcgccgcccgccc 131
           ||||||||||||||||||||
Sbjct: 139 tcctcccgcgccgcccgccc 120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,664,756
Number of Sequences: 3902068
Number of extensions: 2664756
Number of successful extensions: 51430
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51267
Number of HSP's gapped (non-prelim): 159
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)