>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score =  113 bits (57), Expect = 3e-22
 Identities = 87/97 (89%)
 Strand = Plus / Plus

                                                                          
Query: 139    gcccacggtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgt 198
              |||||||||||||||||||||||||| |||  |||||||| |||||||||||||||||||
Sbjct: 199977 gcccacggtgctgacggtgtggcgcaggtcgctgctcttcaactgcgacggcttcaccgt 200036

                                                   
Query: 199    cttcgactccgccggcggtctcgctttccgcgtcgac 235
              ||||||| ||  |||||  ||||| ||||||||||||
Sbjct: 200037 cttcgacgccaacggcgacctcgccttccgcgtcgac 200073



 Score =  107 bits (54), Expect = 2e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                          
Query: 146    gtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgtcttcgac 205
              |||||||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||
Sbjct: 241096 gtgctgacggtgtggcgcaagtcgctgctcttcaactgcgacggcttcaccgtctacgac 241037

                                            
Query: 206    tccgccggcggtctcgctttccgcgtcgac 235
               ||| |||||  ||||| ||||||||||||
Sbjct: 241036 gccgacggcgacctcgccttccgcgtcgac 241007



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 80/90 (88%)
 Strand = Plus / Plus

                                                                          
Query: 146    gtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgtcttcgac 205
              |||||||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||
Sbjct: 184330 gtgctgacggtgtggcgcaagtcgctgctcttcaactgcgacggcttcaccgtctacgac 184389

                                            
Query: 206    tccgccggcggtctcgctttccgcgtcgac 235
               ||  |||||  ||||| ||||||||||||
Sbjct: 184390 gccaacggcgacctcgccttccgcgtcgac 184419

>gb|AY106227.1| Zea mays PCO085810 mRNA sequence
          Length = 424

 Score =  101 bits (51), Expect = 1e-18
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                       
Query: 139 gcccacggtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgt 198
           ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||
Sbjct: 153 gcccacggtgctgacggtgtggcgcaagtcgctgctcttcaactgcgacggcttcaccgt 212

                  
Query: 199 cttcgac 205
           || ||||
Sbjct: 213 ctacgac 219

>gb|AC136969.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0048P17, complete sequence
          Length = 149883

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 145   ggtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgtcttcga 204
             |||||| |||||||||||||||||| | |||||| ||||| |||||||||||||||||||
Sbjct: 63627 ggtgctcacggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcga 63568

              
Query: 205   c 205
             |
Sbjct: 63567 c 63567



 Score = 48.1 bits (24), Expect = 0.012
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 188   ggcttcaccgtcttcgactccgccggcggtctcgctttccgcgtcgac 235
             |||||| |||||| |||||||||||||   ||||| ||||||||||||
Sbjct: 78276 ggcttctccgtctacgactccgccggcaagctcgccttccgcgtcgac 78229

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                          
Query: 145    ggtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgtcttcga 204
              |||||| |||||||||||||||||| | |||||| ||||| |||||||||||||||||||
Sbjct: 954456 ggtgctcacggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcga 954397

               
Query: 205    c 205
              |
Sbjct: 954396 c 954396



 Score = 48.1 bits (24), Expect = 0.012
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                  
Query: 184    cgacggcttcaccgtcttcgactccgccggcggtctcgctttccgcgtcgac 235
              |||||||||| |||||| |||||||||||||   ||||| ||||| ||||||
Sbjct: 969465 cgacggcttctccgtctacgactccgccggcaagctcgccttccgtgtcgac 969414

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                          
Query: 145    ggtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgtcttcga 204
              |||||| |||||||||||||||||| | |||||| ||||| |||||||||||||||||||
Sbjct: 896751 ggtgctcacggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcga 896692

               
Query: 205    c 205
              |
Sbjct: 896691 c 896691



 Score = 48.1 bits (24), Expect = 0.012
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 188    ggcttcaccgtcttcgactccgccggcggtctcgctttccgcgtcgac 235
              |||||| |||||| |||||||||||||   ||||| ||||||||||||
Sbjct: 912281 ggcttctccgtctacgactccgccggcaagctcgccttccgcgtcgac 912234



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 188      ggcttcaccgtcttcgactccgccggcggtctcgctttccgcgtcgac 235
                |||||| |||||| |||||||||||||   ||||| ||||| ||||||
Sbjct: 18970291 ggcttctccgtctacgactccgccggcaagctcgcgttccgtgtcgac 18970338

>dbj|AK073422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044A06, full
           insert sequence
          Length = 1171

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                       
Query: 145 ggtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgtcttcga 204
           |||||| |||||||||||||||||| | |||||| ||||| |||||||||||||||||||
Sbjct: 207 ggtgctcacggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcga 266

            
Query: 205 c 205
           |
Sbjct: 267 c 267

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                          
Query: 145    ggtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgtcttcga 204
              |||||| |||||||||||||||||| | |||||| ||||| |||||||||||||||||||
Sbjct: 896057 ggtgctcacggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcga 895998

               
Query: 205    c 205
              |
Sbjct: 895997 c 895997



 Score = 48.1 bits (24), Expect = 0.012
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 188    ggcttcaccgtcttcgactccgccggcggtctcgctttccgcgtcgac 235
              |||||| |||||| |||||||||||||   ||||| ||||||||||||
Sbjct: 910706 ggcttctccgtctacgactccgccggcaagctcgccttccgcgtcgac 910659



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 188      ggcttcaccgtcttcgactccgccggcggtctcgctttccgcgtcgac 235
                |||||| |||||| |||||||||||||   ||||| ||||| ||||||
Sbjct: 19128940 ggcttctccgtctacgactccgccggcaagctcgcgttccgtgtcgac 19128987

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                          
Query: 145    ggtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgtcttcga 204
              |||||| |||||||||||||||||| | |||||| ||||| |||||||||||||||||||
Sbjct: 954456 ggtgctcacggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcga 954397

               
Query: 205    c 205
              |
Sbjct: 954396 c 954396



 Score = 48.1 bits (24), Expect = 0.012
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                  
Query: 184    cgacggcttcaccgtcttcgactccgccggcggtctcgctttccgcgtcgac 235
              |||||||||| |||||| |||||||||||||   ||||| ||||| ||||||
Sbjct: 969465 cgacggcttctccgtctacgactccgccggcaagctcgccttccgtgtcgac 969414

>emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126_F08 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 134217

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 145   ggtgctgacggtgtggcgcaagtctttgctcttccactgcgacggcttcaccgtcttcga 204
             |||||| |||||||||||||||||| | |||||| ||||| |||||||||||||||||||
Sbjct: 92041 ggtgctcacggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcga 91982

              
Query: 205   c 205
             |
Sbjct: 91981 c 91981



 Score = 48.1 bits (24), Expect = 0.012
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                  
Query: 184    cgacggcttcaccgtcttcgactccgccggcggtctcgctttccgcgtcgac 235
              |||||||||| |||||| |||||||||||||   ||||| ||||| ||||||
Sbjct: 107050 cgacggcttctccgtctacgactccgccggcaagctcgccttccgtgtcgac 106999

>ref|XM_381391.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01215.1)
           partial mRNA
          Length = 648

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 119 gccgtcgtcgaggtgcagcag 139
           |||||||||||||||||||||
Sbjct: 186 gccgtcgtcgaggtgcagcag 166

>gb|AE005108.1| Halobacterium sp. NRC-1 section 139 of 170 of the complete genome
          Length = 10914

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 183  gcgacggcttcaccgtcttcgactc 207
            |||||||| ||||||||||||||||
Sbjct: 9989 gcgacggcgtcaccgtcttcgactc 9965

>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0041J17, complete sequence
          Length = 148829

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 188   ggcttcaccgtcttcgactccgccggcggtctcgctttccgcgtcgac 235
             |||||| |||||| |||||||||||||   ||||| ||||| ||||||
Sbjct: 73489 ggcttctccgtctacgactccgccggcaagctcgcgttccgtgtcgac 73536

>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24
          Length = 299050

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 183   gcgacggcttcaccgtcttcgact 206
             ||||||||||| ||||||||||||
Sbjct: 26921 gcgacggcttctccgtcttcgact 26944

>emb|BX294142.1| Pirellula sp. strain 1 complete genome; segment 10/24
          Length = 294050

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   gtcttcgactccgccggcgg 216
             ||||||||||||||||||||
Sbjct: 29702 gtcttcgactccgccggcgg 29683

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 190    cttcaccgtcttcgactccgccgg 213
              |||| |||||||||||||||||||
Sbjct: 247382 cttctccgtcttcgactccgccgg 247359

>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 180     actgcgacggcttcaccgtc 199
               ||||||||||||||||||||
Sbjct: 1569306 actgcgacggcttcaccgtc 1569325

>dbj|AK109924.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D12, full
           insert sequence
          Length = 2609

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 188 ggcttcaccgtcttcgactccgccggcggtctcgctttccgcgtcgac 235
           |||||| |||||| |||||||||||||   ||||| ||||| ||||||
Sbjct: 156 ggcttctccgtctacgactccgccggcaagctcgcgttccgtgtcgac 203

>emb|AL732601.16| Mouse DNA sequence from clone RP23-154J12 on chromosome 2, complete
             sequence
          Length = 192345

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   caagtctttgctcttccact 182
             ||||||||||||||||||||
Sbjct: 58576 caagtctttgctcttccact 58557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,286,508
Number of Sequences: 3902068
Number of extensions: 1286508
Number of successful extensions: 25846
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25676
Number of HSP's gapped (non-prelim): 170
length of query: 237
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 215
effective length of database: 17,147,199,772
effective search space: 3686647950980
effective search space used: 3686647950980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)