>DHX9_BOVIN (Q28141) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
           helicase II) (NDH II) (DEAH box protein 9)
          Length = 1287

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +3

Query: 228 DGICEGICDGEHGSKSVLSMSRLKCALRGFDLKALLFLLI---GVPIIIFVIYVHGQKVT 398
           D  C  IC  E+G+++ +SM++L      F+L   L L I    VP  + ++++ G  + 
Sbjct: 602 DANCNLICGDEYGAETRISMAQLNEKETPFELIEALLLYIETLNVPGAV-LVFLPGWNLI 660

Query: 399 YFLRPIWEKPPKPFTVLPHYYHENVSMANLCKLHGWKVREAPRRVFDAV 545
           Y ++   E  P          H       +  LH    RE  R+VFD V
Sbjct: 661 YTMQKHLEMNP----------HFGSHRYQILPLHSQIPREEQRKVFDPV 699

>DHX9_PONPY (Q5R874) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
           helicase II) (NDH II) (DEAH box protein 9)
          Length = 1269

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
 Frame = +3

Query: 228 DGICEGICDGEHGSKSVLSMSRLKCALRGFDL-KALLFLL--IGVPIIIFVIYVHGQKVT 398
           D  C  IC  E+G ++ LSMS+L      F+L +ALL  +  + VP  + ++++ G  + 
Sbjct: 605 DANCNLICGDEYGPETRLSMSQLNEKETPFELIEALLKYIETLNVPGAV-LVFLPGWNLI 663

Query: 399 YFLRPIWEKPPKPFTVLPHYYHENVSMANLCKLHGWKVREAPRRVFDAV 545
           Y ++   E  P          H       +  LH    RE  R+VFD V
Sbjct: 664 YTMQKHLEMNP----------HFGSHRYQILPLHSQIPREEQRKVFDPV 702

>DHX9_HUMAN (Q08211) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
           helicase II) (NDH II) (DEAH box protein 9)
          Length = 1270

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
 Frame = +3

Query: 228 DGICEGICDGEHGSKSVLSMSRLKCALRGFDL-KALLFLL--IGVPIIIFVIYVHGQKVT 398
           D  C  IC  E+G ++ LSMS+L      F+L +ALL  +  + VP  + ++++ G  + 
Sbjct: 605 DANCNLICGDEYGPETRLSMSQLNEKETPFELIEALLKYIETLNVPGAV-LVFLPGWNLI 663

Query: 399 YFLRPIWEKPPKPFTVLPHYYHENVSMANLCKLHGWKVREAPRRVFDAV 545
           Y ++   E  P          H       +  LH    RE  R+VFD V
Sbjct: 664 YTMQKHLEMNP----------HFGSHRYQILPLHSQIPREEQRKVFDPV 702

>DHX9_MOUSE (O70133) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
           helicase II) (NDH II) (DEAH box protein 9) (mHEL-5)
          Length = 1380

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
 Frame = +3

Query: 228 DGICEGICDGEHGSKSVLSMSRLKCALRGFDL-KALLFLL--IGVPIIIFVIYVHGQKVT 398
           D  C  IC  E+G ++ LSMS+L      F+L +ALL  +  + VP  + ++++ G  + 
Sbjct: 607 DANCNLICGDEYGPETKLSMSQLNEKETPFELIEALLKYIETLNVPGAV-LVFLPGWNLI 665

Query: 399 YFLRPIWEKPPKPFTVLPHYYHENVSMANLCKLHGWKVREAPRRVFDAV 545
           Y ++            L +  H       +  LH    RE  R+VFD V
Sbjct: 666 YTMQ----------KHLENNSHFGSHRYQILPLHSQIPREEQRKVFDPV 704

>NADB_PYRHO (O57765) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate|
           synthetase B)
          Length = 464

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 198 AGYYTNCKKTDGICEGICDGEHGSKSVLSMSRLKCALRGFDL 323
           A Y T  K    I E  C+G HG+  + S S L+C + G ++
Sbjct: 318 AFYRTRIKGLYAIGESACNGFHGANRLASNSLLECVVSGLEV 359

>RK19_PORPU (P51331) Chloroplast 50S ribosomal protein L19|
          Length = 123

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 219 KKTDGICEGICDGEHGSKSVLSMSRLKCALRGFDLKALLFLLIGVPIIIFVIYVHGQKV- 395
           K  + +CEG+       KS+ +   L+C+ +G  ++ + FL    P + FV  +   KV 
Sbjct: 44  KTREQLCEGVVLSRKKRKSLNTSLTLRCSFQGVGVERVFFL--NSPRVTFVKVIRRAKVR 101

Query: 396 ---TYFLRPIWEK 425
               Y+LR +  K
Sbjct: 102 RAKLYYLRDLLGK 114

>NADB_PYRFU (Q8TZL4) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate|
           synthetase B)
          Length = 464

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 204 YYTNCKKTDGICEGICDGEHGSKSVLSMSRLKCALRGFDL 323
           Y T  K    I E  C+G HG+  + S S L+C + G ++
Sbjct: 317 YRTPIKGLYAIGEAACNGFHGANRLASNSLLECIVSGIEV 356

>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)|
          Length = 1845

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = +3

Query: 30  PTPRGHQRKNTARHRGAQETAAGRSEHHWSRARLSPPAPRVRALTRSSGRAAAMDAAGY 206
           P P+   RK+   H      +  R      R   +PP P      RS+ +A A   A Y
Sbjct: 254 PPPKAPARKSATTHETRPSASRSRRRSPSPRRPATPPKPAAVGTRRSTRQALAHSRASY 312

>STAN_DROME (Q9V5N8) Protocadherin-like wing polarity protein stan precursor|
            (Protein starry night) (Protein flamingo)
          Length = 3574

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
 Frame = +3

Query: 30   PTPRGHQRKNTARHRGAQETAAGRSEH-HWSRARLSPPAPRVRALTRSSGRAAAMDAAGY 206
            P   G  R NT+  RG        S H  +    L  P P      R  G      A GY
Sbjct: 2007 PCASGVCRANTSLPRGYDCECNSSSRHGDYCEKELQQPCPGGWWGERVCGPCRCDLAQGY 2066

Query: 207  YTNCKKTDGIC 239
            + +C KT G C
Sbjct: 2067 HPDCNKTTGQC 2077


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,870,824
Number of Sequences: 219361
Number of extensions: 1519817
Number of successful extensions: 4505
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4504
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)