Clone Information

BLAST Search Result

Clone Name	bart44c04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC129919.9\| Homo sapiens chromosome 17, clone RP13-1277B16, c...	56	1e-04
2	gb\|AF258550.1\|AF258550 Homo sapiens PP13 mRNA, complete cds	56	1e-04
3	gb\|AF218021.1\|AF218021 Homo sapiens clone PP552 unknown mRNA	56	1e-04
4	gb\|AC127496.5\| Homo sapiens chromosome 17, clone CTD-2561B21, co...	56	1e-04
5	emb\|AL365315.8\| Human DNA sequence from clone RP11-275K8 on chro...	46	0.12
6	gb\|AC067922.7\| Homo sapiens chromosome 11, clone RP11-741H19, co...	46	0.12
7	gb\|AC092799.2\| Homo sapiens chromosome 1 clone RP11-5F19, comple...	46	0.12
8	gb\|AC109271.10\| Mus musculus chromosome 1, clone RP23-353I19, co...	44	0.47
9	gb\|CP000099.1\| Methanosarcina barkeri str. fusaro chromosome 1, ...	42	1.8
10	gb\|AC104275.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.8
11	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	1.8
12	emb\|AL157938.22\| Human DNA sequence from clone RP11-544A12 on ch...	42	1.8
13	gb\|AY152826.1\| Felis catus clone BAC 102h1 major histocompatibli...	42	1.8
14	gb\|AC099401.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.8
15	emb\|AJ271055.1\|MMU271055 Mus musculus mRNA for iroquois homeobox...	42	1.8
16	gb\|AC183299.2\| Pan troglodytes BAC clone CH251-263C8 from chromo...	42	1.8
17	gb\|AC025426.11\| Homo sapiens chromosome 10 clone RP11-242G20, co...	42	1.8
18	gb\|AC016938.24\| Homo sapiens 3 BAC RP11-196F13 (Roswell Park Can...	42	1.8
19	gb\|AC019315.9\| Homo sapiens chromosome , clone RP11-153A6, compl...	42	1.8
20	gb\|AC034268.4\| Homo sapiens chromosome 17, clone RP11-312B18, co...	42	1.8
21	gb\|BC036969.1\| Mus musculus Iroquois related homeobox 6 (Drosoph...	42	1.8
22	dbj\|AK035140.1\| Mus musculus 12 days embryo embryonic body betwe...	42	1.8
23	dbj\|AK053729.1\| Mus musculus 0 day neonate eyeball cDNA, RIKEN f...	42	1.8
24	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
25	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
26	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
27	dbj\|AB221658.1\| Mus musculus cDNA pooled tissues:(tissue_type=br...	42	1.8
28	gb\|AC116348.3\| Homo sapiens chromosome 16 clone RP11-297C4, comp...	42	1.8
29	gb\|AC016967.24\| Homo sapiens 3 BAC RP11-72E23 (Roswell Park Canc...	42	1.8
30	dbj\|AP004614.4\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.8
31	ref\|NM_022428.2\| Mus musculus Iroquois related homeobox 6 (Droso...	42	1.8
32	gb\|AC134337.3\| Mus musculus BAC clone RP23-252I24 from 8, comple...	42	1.8
33	gb\|AC110907.7\| Mus musculus chromosome 7, clone RP24-180J10, com...	40	7.3
34	ref\|XM_467486.1\| Oryza sativa (japonica cultivar-group), mRNA	40	7.3
35	gb\|AY684273.2\| Bos grunniens mitochondrion, complete genome	40	7.3
36	ref\|XM_363462.1\| Magnaporthe grisea 70-15 predicted protein (MG0...	40	7.3
37	ref\|XM_360553.1\| Magnaporthe grisea 70-15 predicted protein (MG1...	40	7.3
38	gb\|AC130714.3\| Mus musculus BAC clone RP23-367L18 from chromosom...	40	7.3
39	ref\|XM_981553.1\| PREDICTED: Mus musculus hypothetical protein LO...	40	7.3
40	gb\|CP000352.1\| Ralstonia metallidurans CH34, complete genome	40	7.3
41	ref\|XM_741527.1\| Aspergillus fumigatus Af293 hypothetical protei...	40	7.3
42	gb\|AC144399.2\| Oryctolagus cuniculus clone LBNL1-125D4, complete...	40	7.3
43	gb\|AC136740.10\| Mus musculus chromosome 7, clone RP23-137A24, co...	40	7.3
44	emb\|BX572100.1\| Prochlorococcus marinus MIT9313 complete genome;...	40	7.3
45	dbj\|AB205452.1\| Arripis trutta mitochondrial COI gene for cytoch...	40	7.3
46	gb\|AC093178.4\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.3
47	gb\|AC116349.2\| Homo sapiens chromosome 5 clone RP11-30F18, compl...	40	7.3
48	gb\|AC156391.6\| Mus musculus 10 BAC RP24-258P4 (Roswell Park Canc...	40	7.3
49	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
50	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
51	gb\|AC159137.8\| Mus musculus 10 BAC RP23-9N9 (Roswell Park Cancer...	40	7.3
52	gb\|AC147220.3\| Mus musculus BAC clone RP23-51A20 from chromosome...	40	7.3
53	dbj\|AP004098.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
54	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	7.3
55	gb\|AY937239.1\| Chlamydomonas incerta plus agglutinin (SAG1) gene...	40	7.3
56	dbj\|AK069653.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.3
57	dbj\|AK065635.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.3
58	gb\|AY662775.1\| Ptychochromis sp. 'Makira' cytochrome oxidase sub...	40	7.3
59	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.3
60	emb\|AL135904.11\| Human DNA sequence from clone RP5-1005H11 on ch...	40	7.3
61	gb\|AC005587.1\| Homo sapiens PAC clone RP5-988G15 from 6, complet...	40	7.3

>gb|AC129919.9| Homo sapiens chromosome 17, clone RP13-1277B16, complete sequence
          Length = 182735

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 30   tgcgccgccgcctgcttcccgcgccgcc 57
            ||||||||||||||||||||||||||||
Sbjct: 2799 tgcgccgccgcctgcttcccgcgccgcc 2772

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>gb|AF258550.1|AF258550 Homo sapiens PP13 mRNA, complete cds
          Length = 1784

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 30  tgcgccgccgcctgcttcccgcgccgcc 57
           ||||||||||||||||||||||||||||
Sbjct: 913 tgcgccgccgcctgcttcccgcgccgcc 886

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>gb|AF218021.1|AF218021 Homo sapiens clone PP552 unknown mRNA
          Length = 1786

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 30  tgcgccgccgcctgcttcccgcgccgcc 57
           ||||||||||||||||||||||||||||
Sbjct: 913 tgcgccgccgcctgcttcccgcgccgcc 886

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>gb|AC127496.5| Homo sapiens chromosome 17, clone CTD-2561B21, complete sequence
          Length = 166274

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 30    tgcgccgccgcctgcttcccgcgccgcc 57
             ||||||||||||||||||||||||||||
Sbjct: 44140 tgcgccgccgcctgcttcccgcgccgcc 44167

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>emb|AL365315.8| Human DNA sequence from clone RP11-275K8 on chromosome 1 Contains the 5'
              end of the KCTD3 gene for potassium channel tetramerisation
              domain containing 3, complete sequence
          Length = 139118

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 291    ctcctccctccctcatttctcat 313
              |||||||||||||||||||||||
Sbjct: 111005 ctcctccctccctcatttctcat 111027

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>gb|AC067922.7| Homo sapiens chromosome 11, clone RP11-741H19, complete sequence
          Length = 42868

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 291  ctcctccctccctcatttctcat 313
            |||||||||||||||||||||||
Sbjct: 2001 ctcctccctccctcatttctcat 2023

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>gb|AC092799.2| Homo sapiens chromosome 1 clone RP11-5F19, complete sequence
          Length = 162115

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 291    ctcctccctccctcatttctcat 313
              |||||||||||||||||||||||
Sbjct: 136284 ctcctccctccctcatttctcat 136262

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>gb|AC109271.10| Mus musculus chromosome 1, clone RP23-353I19, complete sequence
          Length = 221001

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 290   tctcctccctccctcatttctc 311
             ||||||||||||||||||||||
Sbjct: 79934 tctcctccctccctcatttctc 79955

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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 460     tgctcgaggctgtaggaggca 480
               |||||||||||||||||||||
Sbjct: 4121249 tgctcgaggctgtaggaggca 4121269

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>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10,
             complete sequence
          Length = 138209

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 166   ctcccatcagcgccgccgctcctcc 190
             ||||||| |||||||||||||||||
Sbjct: 64582 ctcccatgagcgccgccgctcctcc 64606

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 401     agggtttcttccaattcaacaaagtcagg 429
               ||||||||||||||| ||||||| |||||
Sbjct: 3147685 agggtttcttccaatgcaacaaaatcagg 3147713

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>emb|AL157938.22| Human DNA sequence from clone RP11-544A12 on chromosome 9q34.13-34.3
             Contains the 3' end of the LAMC3 gene for laminin gamma 3,
             the gene for ionized calcium binding adaptor (IBA2), the
             NUP214 gene for nucleoporin 214kDa, a novel gene, a
             ribosomal protein L13a (RPL13A) pseudogene, the gene for a
             novel protein (FLJ00024) and four CpG islands, complete
             sequence
          Length = 197019

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 292   tcctccctccctcatttctca 312
             |||||||||||||||||||||
Sbjct: 23300 tcctccctccctcatttctca 23280

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>gb|AY152826.1| Felis catus clone BAC 102h1 major histocompatiblity complex extended
             and classical class II region, partial sequence
          Length = 132445

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 407   tcttccaattcaacaaagtca 427
             |||||||||||||||||||||
Sbjct: 53354 tcttccaattcaacaaagtca 53334

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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
             complete sequence
          Length = 101799

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 401   agggtttcttccaattcaacaaagtcagg 429
             ||||||||||||||| ||||||| |||||
Sbjct: 70698 agggtttcttccaatgcaacaaaatcagg 70726

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>emb|AJ271055.1|MMU271055 Mus musculus mRNA for iroquois homeobox protein 6 (Irx6 gene)
          Length = 1750

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 21  cctgctccctgcgccgccgcc 41
           |||||||||||||||||||||
Sbjct: 869 cctgctccctgcgccgccgcc 889

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>gb|AC183299.2| Pan troglodytes BAC clone CH251-263C8 from chromosome 17, complete
             sequence
          Length = 170313

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 453   gtggagctgctcgaggctgtaggag 477
             |||||||||||||||||||| ||||
Sbjct: 78055 gtggagctgctcgaggctgtgggag 78031

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>gb|AC025426.11| Homo sapiens chromosome 10 clone RP11-242G20, complete sequence
          Length = 153645

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 289  atctcctccctccctcatttctcat 313
            |||||||||| ||||||||||||||
Sbjct: 8387 atctcctcccaccctcatttctcat 8411

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>gb|AC016938.24| Homo sapiens 3 BAC RP11-196F13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 41001

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 414  attcaacaaagtcaggcacta 434
            |||||||||||||||||||||
Sbjct: 4262 attcaacaaagtcaggcacta 4282

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>gb|AC019315.9| Homo sapiens chromosome , clone RP11-153A6, complete sequence
          Length = 152057

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 453   gtggagctgctcgaggctgtaggag 477
             |||||||||||| ||||||||||||
Sbjct: 57867 gtggagctgctcaaggctgtaggag 57891

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>gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, complete sequence
          Length = 198935

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 453   gtggagctgctcgaggctgtaggag 477
             |||||||||||||||||||| ||||
Sbjct: 86591 gtggagctgctcgaggctgtgggag 86615

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>gb|BC036969.1| Mus musculus Iroquois related homeobox 6 (Drosophila), mRNA (cDNA
           clone IMAGE:4512181), partial cds
          Length = 1041

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 21  cctgctccctgcgccgccgcc 41
           |||||||||||||||||||||
Sbjct: 199 cctgctccctgcgccgccgcc 219

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>dbj|AK035140.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430093B05 product:iroquois related homeobox 6
            (Drosophila), full insert sequence
          Length = 3373

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 21   cctgctccctgcgccgccgcc 41
            |||||||||||||||||||||
Sbjct: 1608 cctgctccctgcgccgccgcc 1628

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>dbj|AK053729.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130303E11 product:iroquois related
            homeobox 6 (Drosophila), full insert sequence
          Length = 2382

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 21   cctgctccctgcgccgccgcc 41
            |||||||||||||||||||||
Sbjct: 1493 cctgctccctgcgccgccgcc 1513

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 166     ctcccatcagcgccgccgctcctcc 190
               ||||||| |||||||||||||||||
Sbjct: 7628187 ctcccatgagcgccgccgctcctcc 7628211

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 401     agggtttcttccaattcaacaaagtcagg 429
               ||||||||||||||| ||||||| |||||
Sbjct: 3147796 agggtttcttccaatgcaacaaaatcagg 3147824

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 512      ggccatgccggcaccgatgct 532
                |||||||||||||||||||||
Sbjct: 20432298 ggccatgccggcaccgatgct 20432278

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>dbj|AB221658.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12
           days
           neonate,strain=BALB/c),(tissue_type=testis,
           dev_stage=adult, strain=C57BL/6J), clone:V01Y041C19
          Length = 1315

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 21  cctgctccctgcgccgccgcc 41
           |||||||||||||||||||||
Sbjct: 857 cctgctccctgcgccgccgcc 877

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>gb|AC116348.3| Homo sapiens chromosome 16 clone RP11-297C4, complete sequence
          Length = 149508

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 84     caccgcacctccacctaccgg 104
              |||||||||||||||||||||
Sbjct: 111285 caccgcacctccacctaccgg 111265

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>gb|AC016967.24| Homo sapiens 3 BAC RP11-72E23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 140971

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 397   aaggagggtttcttccaattcaaca 421
             ||||||||||| |||||||||||||
Sbjct: 44104 aaggagggtttgttccaattcaaca 44128

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>dbj|AP004614.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0042P21
          Length = 141230

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 512   ggccatgccggcaccgatgct 532
             |||||||||||||||||||||
Sbjct: 88413 ggccatgccggcaccgatgct 88393

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>ref|NM_022428.2| Mus musculus Iroquois related homeobox 6 (Drosophila) (Irx6), mRNA
          Length = 2380

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 21   cctgctccctgcgccgccgcc 41
            |||||||||||||||||||||
Sbjct: 1492 cctgctccctgcgccgccgcc 1512

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>gb|AC134337.3| Mus musculus BAC clone RP23-252I24 from 8, complete sequence
          Length = 169201

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    cctgctccctgcgccgccgcc 41
             |||||||||||||||||||||
Sbjct: 81808 cctgctccctgcgccgccgcc 81788

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>gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, complete sequence
          Length = 179750

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   cctcctccgcgccgcgcccc 130
             ||||||||||||||||||||
Sbjct: 15016 cctcctccgcgccgcgcccc 15035

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>ref|XM_467486.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1100

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  tccacctaccggccgcaccc 112
           ||||||||||||||||||||
Sbjct: 570 tccacctaccggccgcaccc 589

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>gb|AY684273.2| Bos grunniens mitochondrion, complete genome
          Length = 16322

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  ctcctccctccctcatttct 310
            ||||||||||||||||||||
Sbjct: 6528 ctcctccctccctcatttct 6547

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>ref|XM_363462.1| Magnaporthe grisea 70-15 predicted protein (MG01388.4) partial mRNA
          Length = 756

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 ccctcctccgcgccgcgccc 129
           ||||||||||||||||||||
Sbjct: 541 ccctcctccgcgccgcgccc 522

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>ref|XM_360553.1| Magnaporthe grisea 70-15 predicted protein (MG10865.4) partial mRNA
          Length = 2112

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 gcccccggtcgccgtcacca 145
           ||||||||||||||||||||
Sbjct: 771 gcccccggtcgccgtcacca 790

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>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete
             sequence
          Length = 193184

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 281   tctggtggatctcctccctccctc 304
             ||||||||||||||||| ||||||
Sbjct: 35033 tctggtggatctcctccttccctc 35010

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>ref|XM_981553.1| PREDICTED: Mus musculus hypothetical protein LOC670490 (LOC670490),
           mRNA
          Length = 768

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 cctcctccgcgccgcgcccc 130
           ||||||||||||||||||||
Sbjct: 524 cctcctccgcgccgcgcccc 543

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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     cagcgccgccgctcctccct 192
               ||||||||||||||||||||
Sbjct: 2444257 cagcgccgccgctcctccct 2444276

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>ref|XM_741527.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g04350) partial
            mRNA
          Length = 4257

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 500  ggagatgggaatggccatgc 519
            ||||||||||||||||||||
Sbjct: 1542 ggagatgggaatggccatgc 1523

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>gb|AC144399.2| Oryctolagus cuniculus clone LBNL1-125D4, complete sequence
          Length = 191541

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     cgccgcctgcttcccgcgccgccc 58
              |||||||||| |||||||||||||
Sbjct: 172335 cgccgcctgcctcccgcgccgccc 172358

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>gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, complete sequence
          Length = 219863

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    cctcctccgcgccgcgcccc 130
              ||||||||||||||||||||
Sbjct: 177863 cctcctccgcgccgcgcccc 177882

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>emb|BX572100.1| Prochlorococcus marinus MIT9313 complete genome; segment 6/7
          Length = 348071

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   gctgctcgaggctgtaggag 477
             ||||||||||||||||||||
Sbjct: 73370 gctgctcgaggctgtaggag 73389

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>dbj|AB205452.1| Arripis trutta mitochondrial COI gene for cytochrome c oxidase
           subunit I, complete cds
          Length = 1551

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 ctcctccctccctcatttct 310
           ||||||||||||||||||||
Sbjct: 310 ctcctccctccctcatttct 329

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>gb|AC093178.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0091B12, complete sequence
          Length = 137568

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    tgctccctgcgccgccgcct 42
             ||||||||||||||||||||
Sbjct: 51534 tgctccctgcgccgccgcct 51515

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>gb|AC116349.2| Homo sapiens chromosome 5 clone RP11-30F18, complete sequence
          Length = 164891

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   tcctccctccctcatttctc 311
             ||||||||||||||||||||
Sbjct: 32235 tcctccctccctcatttctc 32216

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>gb|AC156391.6| Mus musculus 10 BAC RP24-258P4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 186703

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 431   actactcttgttctttcctgttgt 454
             |||||| |||||||||||||||||
Sbjct: 78956 actacttttgttctttcctgttgt 78933

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 23      tgctccctgcgccgccgcct 42
               ||||||||||||||||||||
Sbjct: 6848507 tgctccctgcgccgccgcct 6848488

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 93       tccacctaccggccgcaccc 112
                ||||||||||||||||||||
Sbjct: 29818503 tccacctaccggccgcaccc 29818484

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>gb|AC159137.8| Mus musculus 10 BAC RP23-9N9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 207728

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 431    actactcttgttctttcctgttgt 454
              |||||| |||||||||||||||||
Sbjct: 155181 actacttttgttctttcctgttgt 155158

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>gb|AC147220.3| Mus musculus BAC clone RP23-51A20 from chromosome 18, complete sequence
          Length = 208705

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 281   tctggtggatctcctccctccctc 304
             ||||||||||||||||| ||||||
Sbjct: 39108 tctggtggatctcctccttccctc 39131

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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    tccacctaccggccgcaccc 112
             ||||||||||||||||||||
Sbjct: 74848 tccacctaccggccgcaccc 74829

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 28      cctgcgccgccgcctgcttc 47
               ||||||||||||||||||||
Sbjct: 7412412 cctgcgccgccgcctgcttc 7412431

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>gb|AY937239.1| Chlamydomonas incerta plus agglutinin (SAG1) gene, partial cds
          Length = 13081

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  ctcccccgcgccaccttccc 247
            ||||||||||||||||||||
Sbjct: 8255 ctcccccgcgccaccttccc 8274

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>dbj|AK069653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031J12, full
           insert sequence
          Length = 1100

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  tccacctaccggccgcaccc 112
           ||||||||||||||||||||
Sbjct: 570 tccacctaccggccgcaccc 589

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>dbj|AK065635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030N19, full
           insert sequence
          Length = 1502

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 401 agggtttcttccaattcaacaaagtcag 428
           ||||||||||||||| ||||||| ||||
Sbjct: 210 agggtttcttccaatgcaacaaaatcag 237

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>gb|AY662775.1| Ptychochromis sp. 'Makira' cytochrome oxidase subunit I gene,
           partial cds; mitochondrial
          Length = 649

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 ctcctccctccctcatttct 310
           ||||||||||||||||||||
Sbjct: 260 ctcctccctccctcatttct 279

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 23      tgctccctgcgccgccgcct 42
               ||||||||||||||||||||
Sbjct: 6851793 tgctccctgcgccgccgcct 6851774

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>emb|AL135904.11| Human DNA sequence from clone RP5-1005H11 on chromosome 6 Contains part
             of the gene for a 7 transmembrane receptor (rhodopsin
             family) (olfactory receptor like) protein, the gene for
             WUGSC:H_DJ0988G15.3 protein, part of the PDNP3
             (phosphodiesterase I/nucleotide pyrophosphatase 3) gene,
             ESTs, STSs and GSSs, complete sequence
          Length = 59130

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    gcccaccgcacctccacctaccgg 104
             |||||| |||||||||||||||||
Sbjct: 56398 gcccactgcacctccacctaccgg 56375

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>gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complete sequence
          Length = 140915

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    gcccaccgcacctccacctaccgg 104
             |||||| |||||||||||||||||
Sbjct: 68152 gcccactgcacctccacctaccgg 68175


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,279,712
Number of Sequences: 3902068
Number of extensions: 5279712
Number of successful extensions: 108297
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107583
Number of HSP's gapped (non-prelim): 714
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result