ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart44c03 |
|---|---|
| Clone Library Name | barley_pub |
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 130 bits (327), Expect = 3e-30 Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 1/129 (0%) Frame = +3 Query: 171 ADTTTTCPPSAQGRLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 347 A T++TC + G ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTC--ATLGEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 348 AGTSTGALVTSMLAAPGENKRPLFEAKDINNFYLENGPKIFPQRRLGFLTPIANLFGAVE 527 GTSTG L+T+M+ P EN RP AKDI FY E+GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIF 121 Query: 528 GPKYDGKFL 554 GP+YDGK+L Sbjct: 122 GPRYDGKYL 130
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 129 bits (325), Expect = 4e-30 Identities = 68/126 (53%), Positives = 85/126 (67%), Gaps = 1/126 (0%) Frame = +3 Query: 180 TTTCPPSAQGRLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVIAGT 356 TT+ + G ++TVLSIDGGGI+G+IP+TIL LE +LQE+D DAR+ADYFDVI GT Sbjct: 17 TTSSTFATLGEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGT 76 Query: 357 STGALVTSMLAAPGENKRPLFEAKDINNFYLENGPKIFPQRRLGFLTPIANLFGAVEGPK 536 STG L+T+M+ P E RP AKDI FY E+GPKIF G++ GPK Sbjct: 77 STGGLLTAMITTPNETNRPFAAAKDIVPFYFEHGPKIFQSS------------GSIFGPK 124 Query: 537 YDGKFL 554 YDGK+L Sbjct: 125 YDGKYL 130
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 127 bits (319), Expect = 2e-29 Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 1/129 (0%) Frame = +3 Query: 171 ADTTTTCPPSAQGRLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 347 A T++TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 7 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 64 Query: 348 AGTSTGALVTSMLAAPGENKRPLFEAKDINNFYLENGPKIFPQRRLGFLTPIANLFGAVE 527 GTSTG L+T+M+ P EN RP AKDI FY E+GP IF N G++ Sbjct: 65 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIF 112 Query: 528 GPKYDGKFL 554 GP+YDGK+L Sbjct: 113 GPRYDGKYL 121
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 126 bits (316), Expect = 5e-29 Identities = 68/129 (52%), Positives = 86/129 (66%), Gaps = 1/129 (0%) Frame = +3 Query: 171 ADTTTTCPPSAQGRLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 347 A T++TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 348 AGTSTGALVTSMLAAPGENKRPLFEAKDINNFYLENGPKIFPQRRLGFLTPIANLFGAVE 527 GTSTG L+T+M+ P EN RP AKDI FY E+GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSII 121 Query: 528 GPKYDGKFL 554 GP YDGK+L Sbjct: 122 GPMYDGKYL 130
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 126 bits (316), Expect = 5e-29 Identities = 68/129 (52%), Positives = 86/129 (66%), Gaps = 1/129 (0%) Frame = +3 Query: 171 ADTTTTCPPSAQGRLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 347 A T++TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 348 AGTSTGALVTSMLAAPGENKRPLFEAKDINNFYLENGPKIFPQRRLGFLTPIANLFGAVE 527 GTSTG L+T+M+ P EN RP AKDI FY E+GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIL 121 Query: 528 GPKYDGKFL 554 GP YDGK+L Sbjct: 122 GPMYDGKYL 130
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 36.6 bits (83), Expect = 0.050 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +3 Query: 222 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALV 374 +L +DGGG++GLI +L +E D FD +AGTSTG ++ Sbjct: 480 LLCLDGGGVKGLIIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGIL 524
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 36.2 bits (82), Expect = 0.066 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 222 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALV 374 +L +DGGG++GL+ +L +E D FD +AGTSTG ++ Sbjct: 425 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGIL 469
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 36.2 bits (82), Expect = 0.066 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 222 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALV 374 +L +DGGG++GL+ +L +E D FD +AGTSTG ++ Sbjct: 426 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGIL 470
>YLBK_BACSU (O34731) Hypothetical UPF0028 protein ylbK| Length = 260 Score = 30.0 bits (66), Expect = 4.7 Identities = 21/56 (37%), Positives = 28/56 (50%) Frame = +3 Query: 225 LSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVTSMLAA 392 L++ GG RGL +L+ L E+D +IAG+S GALV S AA Sbjct: 8 LALGSGGARGLAHLGVLSSLHKHQIEVD-----------MIAGSSMGALVGSFYAA 52
>MTG8R_MOUSE (O70374) Protein CBFA2T2 (MTG8-like protein) (MTG8-related protein| 1) Length = 574 Score = 30.0 bits (66), Expect = 4.7 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Frame = +3 Query: 255 LIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVTS---MLAAPGENKRPLFEA 425 L+ +L C + Q P +A + ++ TS + S ++ G KRP E Sbjct: 155 LLQRELLHCARAAKQT---PSQYLAQHEHLLLNTSIASPADSSELLMEVHGNGKRPSPER 211 Query: 426 KDINNFYLENGPKIFPQRRLGFLTP 500 +D NNF + P P +R+ ++P Sbjct: 212 RDENNFERDTVPPEPPAKRVCTISP 236
>HYPA_GEOSL (Q74G73) Probable hydrogenase nickel incorporation protein hypA| Length = 110 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +3 Query: 189 CPPSAQGRLITVLSIDGGGIRGLIPSTILACLESKLQELDGPDARIA 329 C SA+GR I + ++ G + G++P + C E+ AR+A Sbjct: 14 CEKSAEGRRILAVVLEIGELSGVVPEAVEFCFEACTAGTLAEGARLA 60
>COAD_BDEBA (Q6MQ60) Phosphopantetheine adenylyltransferase (EC 2.7.7.3)| (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase) Length = 160 Score = 29.3 bits (64), Expect = 8.0 Identities = 9/31 (29%), Positives = 23/31 (74%) Frame = +3 Query: 210 RLITVLSIDGGGIRGLIPSTILACLESKLQE 302 R + ++I+GG ++GL+P ++ +E+K+++ Sbjct: 130 RGVKEVAINGGALKGLVPDVVVEAMENKIRK 160 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,263,727 Number of Sequences: 219361 Number of extensions: 1225993 Number of successful extensions: 3544 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3525 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
