ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart44c03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK058531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A08, full insert sequence Length = 1618 Score = 305 bits (154), Expect = 8e-80 Identities = 294/341 (86%) Strand = Plus / Plus Query: 204 caggggcgactcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccc 263 |||||| | |||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 275 caggggaggctcatcaccgtgctgagcatcgacggcggcggcatccgcggcctcatcccg 334 Query: 264 tccaccatcctcgcatgtctcgagtccaagctccaggagctagacgggccggacgcgcgc 323 ||||||||||||| || |||||| |||||||||||||||| ||||||||||| ||| | Sbjct: 335 gccaccatcctcgcctgcctcgaggccaagctccaggagctggacgggccggaggcgagg 394 Query: 324 atcgcggactacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatg 383 |||||||||||||||||||||||||||||||||||||| || |||||| ||||||| ||| Sbjct: 395 atcgcggactacttcgacgtgatcgccgggacgagcaccggggcgctgatcacgtccatg 454 Query: 384 ctggcggcgccgggcgagaacaagcggccactcttcgaggccaaggacatcaacaacttc 443 ||||||||||||| ||| || |||||| ||||||| ||| ||| ||| ||||||| Sbjct: 455 ctggcggcgccggacgacgaccggcggccgctcttcgccgccggcgacctcaccaacttc 514 Query: 444 taccttgagaacgggcccaagatcttcccgcagaggaggttagggttcctgaccccgata 503 ||||| ||||||||||||||||||||||||||| ||||| | |||||| |||| || | Sbjct: 515 tacctcgagaacgggcccaagatcttcccgcagcggagggttgggttcttgacaccagtg 574 Query: 504 gcgaacctgttcggcgcggtngagggtcccaagtacgatgg 544 || |||||| |||||| ||| ||| |||||||||||||| Sbjct: 575 gcaaacctgatcggcgtggtgagggggcccaagtacgatgg 615
>dbj|AK067827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120O20, full insert sequence Length = 2434 Score = 256 bits (129), Expect = 7e-65 Identities = 264/309 (85%) Strand = Plus / Plus Query: 204 caggggcgactcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccc 263 |||||| | |||||||| ||||||||||||||||| ||| |||||||||| ||| |||| Sbjct: 133 caggggaggctcatcaccgtgctgagcatcgacggcggcagcatccgcggcctcgtcccg 192 Query: 264 tccaccatcctcgcatgtctcgagtccaagctccaggagctagacgggccggacgcgcgc 323 ||||||||||||| || |||||| |||||||||||||||| | ||||||||| ||| | Sbjct: 193 gccaccatcctcgcctgcctcgaggccaagctccaggagctgggcgggccggaggcgagg 252 Query: 324 atcgcggactacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatg 383 ||||||||||||||||| |||||||||||||||||||| || |||||| ||||||||||| Sbjct: 253 atcgcggactacttcgatgtgatcgccgggacgagcaccggggcgctgatcacgtcgatg 312 Query: 384 ctggcggcgccgggcgagaacaagcggccactcttcgaggccaaggacatcaacaacttc 443 ||||||||||||| ||| ||| || || ||||||| ||| | ||| ||| ||| ||| Sbjct: 313 ctggcggcgccggacgacaaccggcaaccgctcttcgccgccgacgacctcaccaagttc 372 Query: 444 taccttgagaacgggcccaagatcttcccgcagaggaggttagggttcctgaccccgata 503 ||||| |||||||||||||||||||||||||| |||| | |||||| |||| ||| | Sbjct: 373 tacctcgagaacgggcccaagatcttcccgcaacagagggttgggttcttgacgccggtg 432 Query: 504 gcgaacctg 512 ||||||||| Sbjct: 433 gcgaacctg 441
>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster Length = 162249 Score = 242 bits (122), Expect = 1e-60 Identities = 230/266 (86%) Strand = Plus / Minus Query: 213 ctcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatc 272 ||||||||| | |||||||||||||| |||||||||||||| || ||||| | |||||| Sbjct: 43069 ctcatcacgattctgagcatcgacggcggcggcatccgcggccttatcccggcgaccatc 43010 Query: 273 ctcgcatgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggac 332 |||||| |||||| |||||||||||||||| ||||| || ||||| |||||||| ||| Sbjct: 43009 atcgcatacctcgaggccaagctccaggagctggacggcccagacgcacgcatcgccgac 42950 Query: 333 tacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgctggcggcg 392 ||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||| Sbjct: 42949 tacttcgacgtgatcgccgggacgagcaccggcgccctgctcacgtccatgctggcggcg 42890 Query: 393 ccgggcgagaacaagcggccactcttcgaggccaaggacatcaacaacttctaccttgag 452 || | ||| ||||| ||||| || |||| ||||||||| ||| || ||||||||| ||| Sbjct: 42889 cccgacgacaacaaccggccgctgttcgccgccaaggacctcaccaccttctacctcgag 42830 Query: 453 aacgggcccaagatcttcccgcagag 478 ||||| ||||| |||||||| ||||| Sbjct: 42829 aacggccccaaaatcttcccacagag 42804 Score = 202 bits (102), Expect = 9e-49 Identities = 162/182 (89%) Strand = Plus / Plus Query: 297 caggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 356 |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 72885 caggagctggacgggccggacgcacgcatcgccgactacttcgacgtgatcgccgggacg 72944 Query: 357 agcacgggcgcgctggtcacgtcgatgctggcggcgccgggcgagaacaagcggccactc 416 ||||| ||||||||| | |||||||||||||||||||| | |||||||| |||||| || Sbjct: 72945 agcaccggcgcgctgctgacgtcgatgctggcggcgcccgacgagaacaggcggccgctg 73004 Query: 417 ttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttcccgcag 476 |||| ||||||||| ||| || ||||||||| |||||||| ||||| |||||||| ||| Sbjct: 73005 ttcgccgccaaggacctcaccaccttctacctcgagaacggccccaacatcttcccacag 73064 Query: 477 ag 478 || Sbjct: 73065 ag 73066 Score = 184 bits (93), Expect = 2e-43 Identities = 222/265 (83%) Strand = Plus / Plus Query: 213 ctcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatc 272 ||||||||| | || |||||||| || |||||||||||||| |||||||| | |||||| Sbjct: 56156 ctcatcacgattctcagcatcgatggcggcggcatccgcggcctcatcccggcgaccatc 56215 Query: 273 ctcgcatgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggac 332 ||||| |||||| ||||||| |||||||| ||||| || || || || || || ||| Sbjct: 56216 atcgcacacctcgaggccaagctgcaggagctggacggcccagatgctcggattgccgac 56275 Query: 333 tacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgctggcggcg 392 ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| Sbjct: 56276 tacttcgacgtgatcgccgggacgagcaccggcgccctgctcacgtcgatgctggcggcg 56335 Query: 393 ccgggcgagaacaagcggccactcttcgaggccaaggacatcaacaacttctaccttgag 452 || | ||| ||||| ||||| || ||| ||||||||| ||| || ||||||||| ||| Sbjct: 56336 cccgacgacaacaaccggccgctgttctccgccaaggacctcaccaccttctacctcgag 56395 Query: 453 aacgggcccaagatcttcccgcaga 477 ||||| ||||| || ||||| |||| Sbjct: 56396 aacggccccaaaattttcccacaga 56420 Score = 77.8 bits (39), Expect = 4e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 202 cgcaggggcgactcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcc 261 |||||||| | |||||||| || ||||||||||| || ||||||||||| || ||||||| Sbjct: 72690 cgcaggggaggctcatcaccgttctgagcatcgatggcggcggcatccgggggctcatcc 72749 Query: 262 cctccaccatcctcgcatgtctcgagtccaagctccagg 300 | |||||||| || | || |||||| |||||||||||| Sbjct: 72750 ctgccaccatcatcacctgcctcgagaccaagctccagg 72788 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 527 gggtcccaagtacgatggtaagttcctgcacgacaa 562 ||||||||||||||| || ||||||||||||||| Sbjct: 73199 gggtcccaagtacgacggcgtgttcctgcacgacaa 73234 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 527 gggtcccaagtacgatggtaagttcctgcacgacaa 562 ||||||||||||||| || ||||||||||||||| Sbjct: 56886 gggtcccaagtacgacggcgtgttcctgcacgacaa 56921 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 527 gggtcccaagtacgatggtaagttcctgcacgacaa 562 ||||||||||||||| || ||||||||||||||| Sbjct: 42660 gggtcccaagtacgacggcgtgttcctgcacgacaa 42625
>gb|AY105282.1| Zea mays PCO126203 mRNA sequence Length = 768 Score = 208 bits (105), Expect = 1e-50 Identities = 225/265 (84%) Strand = Plus / Plus Query: 213 ctcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatc 272 ||||||||| | ||||||||||| || |||||||||||||| || ||||| | |||||| Sbjct: 175 ctcatcacgatcctgagcatcgatggcggcggcatccgcggccttatcccggcgaccatc 234 Query: 273 ctcgcatgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggac 332 | || | |||||| |||||||||||||||| ||||| |||||||| || ||||| ||| Sbjct: 235 attgcgtacctcgaggccaagctccaggagctggacggcccggacgctcggatcgccgac 294 Query: 333 tacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgctggcggcg 392 |||||||| ||||| |||||||||||||| ||||| ||| || ||||||||||||||||| Sbjct: 295 tacttcgatgtgattgccgggacgagcaccggcgccctgctcgcgtcgatgctggcggcg 354 Query: 393 ccgggcgagaacaagcggccactcttcgaggccaaggacatcaacaacttctaccttgag 452 |||| ||||||||| ||||| || |||| ||||||||| ||| || |||||||| ||| Sbjct: 355 ccggacgagaacaaccggccgctgttcgccgccaaggacctcaccacgttctacctcgag 414 Query: 453 aacgggcccaagatcttcccgcaga 477 ||||| || ||||||||||| |||| Sbjct: 415 aacggcccaaagatcttcccacaga 439
>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0042J05, complete sequence Length = 150295 Score = 188 bits (95), Expect = 1e-44 Identities = 164/187 (87%) Strand = Plus / Plus Query: 297 caggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 356 |||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||| Sbjct: 7315 caggagctggacgggccggaggcgaggatcgcggactacttcgacgtgatcgccgggacg 7374 Query: 357 agcacgggcgcgctggtcacgtcgatgctggcggcgccgggcgagaacaagcggccactc 416 ||||| || |||||| ||||||| |||||||||||||||| ||| || |||||| ||| Sbjct: 7375 agcaccggggcgctgatcacgtccatgctggcggcgccggacgacgaccggcggccgctc 7434 Query: 417 ttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttcccgcag 476 |||| ||| ||| ||| |||||||||||| ||||||||||||||||||||||||||| Sbjct: 7435 ttcgccgccggcgacctcaccaacttctacctcgagaacgggcccaagatcttcccgcag 7494 Query: 477 aggaggt 483 |||||| Sbjct: 7495 cggaggt 7501 Score = 172 bits (87), Expect = 8e-40 Identities = 156/179 (87%) Strand = Plus / Plus Query: 297 caggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 356 |||||||| ||||||||||| ||| | ||||||||||||||||| ||||||||||||||| Sbjct: 15642 caggagctggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacg 15701 Query: 357 agcacgggcgcgctggtcacgtcgatgctggcggcgccgggcgagaacaagcggccactc 416 ||||| || |||||| |||||||||||||||||||||||| ||| ||| || || ||| Sbjct: 15702 agcaccggggcgctgatcacgtcgatgctggcggcgccggacgacaaccggcaaccgctc 15761 Query: 417 ttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttcccgca 475 |||| ||| | ||| ||| ||| |||||||| |||||||||||||||||||||||||| Sbjct: 15762 ttcgccgccgacgacctcaccaagttctacctcgagaacgggcccaagatcttcccgca 15820 Score = 113 bits (57), Expect = 6e-22 Identities = 87/97 (89%) Strand = Plus / Plus Query: 204 caggggcgactcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccc 263 |||||| | |||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 6857 caggggaggctcatcaccgtgctgagcatcgacggcggcggcatccgcggcctcatcccg 6916 Query: 264 tccaccatcctcgcatgtctcgagtccaagctccagg 300 ||||||||||||| || |||||| |||||||||||| Sbjct: 6917 gccaccatcctcgcctgcctcgaggccaagctccagg 6953 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 204 caggggcgactcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccc 263 |||||| | |||||||| ||||||||||||||||| ||| |||||||||| ||| |||| Sbjct: 14237 caggggaggctcatcaccgtgctgagcatcgacggcggcagcatccgcggcctcgtcccg 14296 Query: 264 tccaccatcctcgcatgtctcgagtccaagctccagg 300 ||||||||||||| || |||||| |||||||||||| Sbjct: 14297 gccaccatcctcgcctgcctcgaggccaagctccagg 14333
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 188 bits (95), Expect = 1e-44 Identities = 164/187 (87%) Strand = Plus / Plus Query: 297 caggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 356 |||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||| Sbjct: 22991312 caggagctggacgggccggaggcgaggatcgcggactacttcgacgtgatcgccgggacg 22991371 Query: 357 agcacgggcgcgctggtcacgtcgatgctggcggcgccgggcgagaacaagcggccactc 416 ||||| || |||||| ||||||| |||||||||||||||| ||| || |||||| ||| Sbjct: 22991372 agcaccggggcgctgatcacgtccatgctggcggcgccggacgacgaccggcggccgctc 22991431 Query: 417 ttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttcccgcag 476 |||| ||| ||| ||| |||||||||||| ||||||||||||||||||||||||||| Sbjct: 22991432 ttcgccgccggcgacctcaccaacttctacctcgagaacgggcccaagatcttcccgcag 22991491 Query: 477 aggaggt 483 |||||| Sbjct: 22991492 cggaggt 22991498 Score = 172 bits (87), Expect = 8e-40 Identities = 156/179 (87%) Strand = Plus / Plus Query: 297 caggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 356 |||||||| ||||||||||| ||| | ||||||||||||||||| ||||||||||||||| Sbjct: 22999639 caggagctggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacg 22999698 Query: 357 agcacgggcgcgctggtcacgtcgatgctggcggcgccgggcgagaacaagcggccactc 416 ||||| || |||||| |||||||||||||||||||||||| ||| ||| || || ||| Sbjct: 22999699 agcaccggggcgctgatcacgtcgatgctggcggcgccggacgacaaccggcaaccgctc 22999758 Query: 417 ttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttcccgca 475 |||| ||| | ||| ||| ||| |||||||| |||||||||||||||||||||||||| Sbjct: 22999759 ttcgccgccgacgacctcaccaagttctacctcgagaacgggcccaagatcttcccgca 22999817 Score = 113 bits (57), Expect = 6e-22 Identities = 87/97 (89%) Strand = Plus / Plus Query: 204 caggggcgactcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccc 263 |||||| | |||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 22990854 caggggaggctcatcaccgtgctgagcatcgacggcggcggcatccgcggcctcatcccg 22990913 Query: 264 tccaccatcctcgcatgtctcgagtccaagctccagg 300 ||||||||||||| || |||||| |||||||||||| Sbjct: 22990914 gccaccatcctcgcctgcctcgaggccaagctccagg 22990950 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 204 caggggcgactcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccc 263 |||||| | |||||||| ||||||||||||||||| ||| |||||||||| ||| |||| Sbjct: 22998234 caggggaggctcatcaccgtgctgagcatcgacggcggcagcatccgcggcctcgtcccg 22998293 Query: 264 tccaccatcctcgcatgtctcgagtccaagctccagg 300 ||||||||||||| || |||||| |||||||||||| Sbjct: 22998294 gccaccatcctcgcctgcctcgaggccaagctccagg 22998330
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 188 bits (95), Expect = 1e-44 Identities = 164/187 (87%) Strand = Plus / Plus Query: 297 caggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 356 |||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||| Sbjct: 23301222 caggagctggacgggccggaggcgaggatcgcggactacttcgacgtgatcgccgggacg 23301281 Query: 357 agcacgggcgcgctggtcacgtcgatgctggcggcgccgggcgagaacaagcggccactc 416 ||||| || |||||| ||||||| |||||||||||||||| ||| || |||||| ||| Sbjct: 23301282 agcaccggggcgctgatcacgtccatgctggcggcgccggacgacgaccggcggccgctc 23301341 Query: 417 ttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttcccgcag 476 |||| ||| ||| ||| |||||||||||| ||||||||||||||||||||||||||| Sbjct: 23301342 ttcgccgccggcgacctcaccaacttctacctcgagaacgggcccaagatcttcccgcag 23301401 Query: 477 aggaggt 483 |||||| Sbjct: 23301402 cggaggt 23301408 Score = 172 bits (87), Expect = 8e-40 Identities = 156/179 (87%) Strand = Plus / Plus Query: 297 caggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 356 |||||||| ||||||||||| ||| | ||||||||||||||||| ||||||||||||||| Sbjct: 23309549 caggagctggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacg 23309608 Query: 357 agcacgggcgcgctggtcacgtcgatgctggcggcgccgggcgagaacaagcggccactc 416 ||||| || |||||| |||||||||||||||||||||||| ||| ||| || || ||| Sbjct: 23309609 agcaccggggcgctgatcacgtcgatgctggcggcgccggacgacaaccggcaaccgctc 23309668 Query: 417 ttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttcccgca 475 |||| ||| | ||| ||| ||| |||||||| |||||||||||||||||||||||||| Sbjct: 23309669 ttcgccgccgacgacctcaccaagttctacctcgagaacgggcccaagatcttcccgca 23309727 Score = 113 bits (57), Expect = 6e-22 Identities = 87/97 (89%) Strand = Plus / Plus Query: 204 caggggcgactcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccc 263 |||||| | |||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 23300764 caggggaggctcatcaccgtgctgagcatcgacggcggcggcatccgcggcctcatcccg 23300823 Query: 264 tccaccatcctcgcatgtctcgagtccaagctccagg 300 ||||||||||||| || |||||| |||||||||||| Sbjct: 23300824 gccaccatcctcgcctgcctcgaggccaagctccagg 23300860 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 204 caggggcgactcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccc 263 |||||| | |||||||| ||||||||||||||||| ||| |||||||||| ||| |||| Sbjct: 23308144 caggggaggctcatcaccgtgctgagcatcgacggcggcagcatccgcggcctcgtcccg 23308203 Query: 264 tccaccatcctcgcatgtctcgagtccaagctccagg 300 ||||||||||||| || |||||| |||||||||||| Sbjct: 23308204 gccaccatcctcgcctgcctcgaggccaagctccagg 23308240
>dbj|AK109768.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A03, full insert sequence Length = 1931 Score = 172 bits (87), Expect = 8e-40 Identities = 156/179 (87%) Strand = Plus / Plus Query: 297 caggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 356 |||||||| ||||||||||| ||| | ||||||||||||||||| ||||||||||||||| Sbjct: 1611 caggagctggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacg 1670 Query: 357 agcacgggcgcgctggtcacgtcgatgctggcggcgccgggcgagaacaagcggccactc 416 ||||| || |||||| |||||||||||||||||||||||| ||| ||| || || ||| Sbjct: 1671 agcaccggggcgctgatcacgtcgatgctggcggcgccggacgacaaccggcaaccgctc 1730 Query: 417 ttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttcccgca 475 |||| ||| | ||| ||| ||| |||||||| |||||||||||||||||||||||||| Sbjct: 1731 ttcgccgccgacgacctcaccaagttctacctcgagaacgggcccaagatcttcccgca 1789 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 204 caggggcgactcatcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccc 263 |||||| | |||||||| ||||||||||||||||| ||| |||||||||| ||| |||| Sbjct: 208 caggggaggctcatcaccgtgctgagcatcgacggcggcagcatccgcggcctcgtcccg 267 Query: 264 tccaccatcctcgcatgtctcgagtccaagctccagg 300 ||||||||||||| || |||||| |||||||||||| Sbjct: 268 gccaccatcctcgcctgcctcgaggccaagctccagg 304
>ref|XM_482944.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1701 Score = 113 bits (57), Expect = 6e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 217 tcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcg 276 |||| ||||||||||||||||| |||||| ||||||| ||||||| ||||||||||| Sbjct: 328 tcaccgtgctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcg 387 Query: 277 catgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactact 336 | | |||||| ||||| ||| |||||||||| | |||||| | ||||| ||||||| Sbjct: 388 ccagcctcgaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactact 447 Query: 337 tcgacgtgatcgccgggacgagcacgggcgcgctggt 373 ||||||| ||||||||||||||||| |||| |||||| Sbjct: 448 tcgacgtaatcgccgggacgagcaccggcgggctggt 484 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 414 ctcttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttccc 472 ||||||| ||||||||||||||| |||||||||| || || | |||||||||||||| Sbjct: 525 ctcttcgccgccaaggacatcaacgacttctacctcaagcactgccccaagatcttccc 583
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 113 bits (57), Expect = 6e-22 Identities = 132/157 (84%) Strand = Plus / Minus Query: 217 tcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcg 276 |||| ||||||||||||||||| |||||| ||||||| ||||||| ||||||||||| Sbjct: 23497737 tcaccgtgctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcg 23497678 Query: 277 catgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactact 336 | | |||||| ||||| ||| |||||||||| | |||||| | ||||| ||||||| Sbjct: 23497677 ccagcctcgaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactact 23497618 Query: 337 tcgacgtgatcgccgggacgagcacgggcgcgctggt 373 ||||||| ||||||||||||||||| |||| |||||| Sbjct: 23497617 tcgacgtaatcgccgggacgagcaccggcgggctggt 23497581 Score = 105 bits (53), Expect = 2e-19 Identities = 185/229 (80%) Strand = Plus / Plus Query: 220 cggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcgcat 279 ||||||||||||||||||| |||||| | ||||| ||||||| |||||||| || | Sbjct: 17656545 cggtgctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgt 17656604 Query: 280 gtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactacttcg 339 || ||| ||||| |||||||| |||||||||| ||| | | ||||||||||||| Sbjct: 17656605 tcctggaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcg 17656664 Query: 340 acgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgctggcggcgccgggcg 399 |||| |||||||||||||||||||||| |||||| ||| | ||||| |||||||| |||| Sbjct: 17656665 acgtcatcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcg 17656724 Query: 400 agaacaagcggccactcttcgaggccaaggacatcaacaacttctacct 448 || ||||| ||||||| |||||||||||| | |||||||||| Sbjct: 17656725 ccgacggccggccgctcttcgccgccaaggacatcgtcgacttctacct 17656773 Score = 81.8 bits (41), Expect = 2e-12 Identities = 128/157 (81%) Strand = Plus / Minus Query: 217 tcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcg 276 |||| ||||||||||||||||| |||||| | ||||| ||||||| ||||||||||| Sbjct: 23487026 tcaccgtgctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcg 23486967 Query: 277 catgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactact 336 | | || ||| || || |||||||| ||||| || || || || |||| |||||| Sbjct: 23486966 cgttcctggaggagaaactgcaggagctggacggccccgaggctcggctcgccaactact 23486907 Query: 337 tcgacgtgatcgccgggacgagcacgggcgcgctggt 373 ||||||||||||||||||||||||| |||| |||||| Sbjct: 23486906 tcgacgtgatcgccgggacgagcaccggcgggctggt 23486870 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 414 ctcttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttccc 472 ||||||| ||||||||||||||| |||||||||| || || | |||||||||||||| Sbjct: 23497540 ctcttcgccgccaaggacatcaacgacttctacctcaagcactgccccaagatcttccc 23497482 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Minus Query: 324 atcgcggactacttcgacgtgatcgccgggacgagcac 361 ||||| |||||||||||||| ||||||| |||||||| Sbjct: 23541035 atcgctgactacttcgacgtcgtcgccggcacgagcac 23540998 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 225 ctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcgc 277 |||||||||||||| |||||| || | || ||||||| ||||||||||||| Sbjct: 23541229 ctgagcatcgacggcggcggcgtcagagggatcatcccggccaccatcctcgc 23541177
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_E05 Length = 126978 Score = 113 bits (57), Expect = 6e-22 Identities = 132/157 (84%) Strand = Plus / Minus Query: 217 tcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcg 276 |||| ||||||||||||||||| |||||| ||||||| ||||||| ||||||||||| Sbjct: 89152 tcaccgtgctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcg 89093 Query: 277 catgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactact 336 | | |||||| ||||| ||| |||||||||| | |||||| | ||||| ||||||| Sbjct: 89092 ccagcctcgaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactact 89033 Query: 337 tcgacgtgatcgccgggacgagcacgggcgcgctggt 373 ||||||| ||||||||||||||||| |||| |||||| Sbjct: 89032 tcgacgtaatcgccgggacgagcaccggcgggctggt 88996 Score = 81.8 bits (41), Expect = 2e-12 Identities = 128/157 (81%) Strand = Plus / Minus Query: 217 tcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcg 276 |||| ||||||||||||||||| |||||| | ||||| ||||||| ||||||||||| Sbjct: 78441 tcaccgtgctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcg 78382 Query: 277 catgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactact 336 | | || ||| || || |||||||| ||||| || || || || |||| |||||| Sbjct: 78381 cgttcctggaggagaaactgcaggagctggacggccccgaggctcggctcgccaactact 78322 Query: 337 tcgacgtgatcgccgggacgagcacgggcgcgctggt 373 ||||||||||||||||||||||||| |||| |||||| Sbjct: 78321 tcgacgtgatcgccgggacgagcaccggcgggctggt 78285 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 414 ctcttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttccc 472 ||||||| ||||||||||||||| |||||||||| || || | |||||||||||||| Sbjct: 88955 ctcttcgccgccaaggacatcaacgacttctacctcaagcactgccccaagatcttccc 88897
>dbj|AK108679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-B01, full insert sequence Length = 1701 Score = 113 bits (57), Expect = 6e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 217 tcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcg 276 |||| ||||||||||||||||| |||||| ||||||| ||||||| ||||||||||| Sbjct: 328 tcaccgtgctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcg 387 Query: 277 catgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactact 336 | | |||||| ||||| ||| |||||||||| | |||||| | ||||| ||||||| Sbjct: 388 ccagcctcgaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactact 447 Query: 337 tcgacgtgatcgccgggacgagcacgggcgcgctggt 373 ||||||| ||||||||||||||||| |||| |||||| Sbjct: 448 tcgacgtaatcgccgggacgagcaccggcgggctggt 484 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 414 ctcttcgaggccaaggacatcaacaacttctaccttgagaacgggcccaagatcttccc 472 ||||||| ||||||||||||||| |||||||||| || || | |||||||||||||| Sbjct: 525 ctcttcgccgccaaggacatcaacgacttctacctcaagcactgccccaagatcttccc 583
>ref|XM_482084.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1329 Score = 105 bits (53), Expect = 2e-19 Identities = 185/229 (80%) Strand = Plus / Plus Query: 220 cggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcgcat 279 ||||||||||||||||||| |||||| | ||||| ||||||| |||||||| || | Sbjct: 170 cggtgctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgt 229 Query: 280 gtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactacttcg 339 || ||| ||||| |||||||| |||||||||| ||| | | ||||||||||||| Sbjct: 230 tcctggaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcg 289 Query: 340 acgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgctggcggcgccgggcg 399 |||| |||||||||||||||||||||| |||||| ||| | ||||| |||||||| |||| Sbjct: 290 acgtcatcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcg 349 Query: 400 agaacaagcggccactcttcgaggccaaggacatcaacaacttctacct 448 || ||||| ||||||| |||||||||||| | |||||||||| Sbjct: 350 ccgacggccggccgctcttcgccgccaaggacatcgtcgacttctacct 398
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0436B06 Length = 148947 Score = 105 bits (53), Expect = 2e-19 Identities = 185/229 (80%) Strand = Plus / Plus Query: 220 cggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcgcat 279 ||||||||||||||||||| |||||| | ||||| ||||||| |||||||| || | Sbjct: 133195 cggtgctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgt 133254 Query: 280 gtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactacttcg 339 || ||| ||||| |||||||| |||||||||| ||| | | ||||||||||||| Sbjct: 133255 tcctggaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcg 133314 Query: 340 acgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgctggcggcgccgggcg 399 |||| |||||||||||||||||||||| |||||| ||| | ||||| |||||||| |||| Sbjct: 133315 acgtcatcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcg 133374 Query: 400 agaacaagcggccactcttcgaggccaaggacatcaacaacttctacct 448 || ||||| ||||||| |||||||||||| | |||||||||| Sbjct: 133375 ccgacggccggccgctcttcgccgccaaggacatcgtcgacttctacct 133423
>dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_C03 Length = 118339 Score = 105 bits (53), Expect = 2e-19 Identities = 185/229 (80%) Strand = Plus / Plus Query: 220 cggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcgcat 279 ||||||||||||||||||| |||||| | ||||| ||||||| |||||||| || | Sbjct: 41934 cggtgctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgt 41993 Query: 280 gtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactacttcg 339 || ||| ||||| |||||||| |||||||||| ||| | | ||||||||||||| Sbjct: 41994 tcctggaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcg 42053 Query: 340 acgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgctggcggcgccgggcg 399 |||| |||||||||||||||||||||| |||||| ||| | ||||| |||||||| |||| Sbjct: 42054 acgtcatcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcg 42113 Query: 400 agaacaagcggccactcttcgaggccaaggacatcaacaacttctacct 448 || ||||| ||||||| |||||||||||| | |||||||||| Sbjct: 42114 ccgacggccggccgctcttcgccgccaaggacatcgtcgacttctacct 42162
>ref|XM_482940.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1629 Score = 81.8 bits (41), Expect = 2e-12 Identities = 128/157 (81%) Strand = Plus / Plus Query: 217 tcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcg 276 |||| ||||||||||||||||| |||||| | ||||| ||||||| ||||||||||| Sbjct: 266 tcaccgtgctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcg 325 Query: 277 catgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactact 336 | | || ||| || || |||||||| ||||| || || || || |||| |||||| Sbjct: 326 cgttcctggaggagaaactgcaggagctggacggccccgaggctcggctcgccaactact 385 Query: 337 tcgacgtgatcgccgggacgagcacgggcgcgctggt 373 ||||||||||||||||||||||||| |||| |||||| Sbjct: 386 tcgacgtgatcgccgggacgagcaccggcgggctggt 422
>dbj|AK101432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038K22, full insert sequence Length = 1629 Score = 81.8 bits (41), Expect = 2e-12 Identities = 128/157 (81%) Strand = Plus / Plus Query: 217 tcacggtgctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcg 276 |||| ||||||||||||||||| |||||| | ||||| ||||||| ||||||||||| Sbjct: 266 tcaccgtgctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcg 325 Query: 277 catgtctcgagtccaagctccaggagctagacgggccggacgcgcgcatcgcggactact 336 | | || ||| || || |||||||| ||||| || || || || |||| |||||| Sbjct: 326 cgttcctggaggagaaactgcaggagctggacggccccgaggctcggctcgccaactact 385 Query: 337 tcgacgtgatcgccgggacgagcacgggcgcgctggt 373 ||||||||||||||||||||||||| |||| |||||| Sbjct: 386 tcgacgtgatcgccgggacgagcaccggcgggctggt 422
>ref|XM_470838.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1450 Score = 71.9 bits (36), Expect = 2e-09 Identities = 111/136 (81%) Strand = Plus / Plus Query: 231 atcgacgggggcggcatccgcggtctcatcccctccaccatcctcgcatgtctcgagtcc 290 |||||||| ||||||||| | || |||||||| |||||||||||| | |||||| || Sbjct: 124 atcgacggcggcggcatcaggggcctcatcccgggcaccatcctcgccttcctcgaggcc 183 Query: 291 aagctccaggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgcc 350 | ||| |||||||| || || || ||||||||| |||| || ||||||||| |||||| Sbjct: 184 aggctgcaggagctggatggccccgacgcgcgcctcgccgattacttcgactgcatcgcc 243 Query: 351 gggacgagcacgggcg 366 ||||| ||||| |||| Sbjct: 244 gggaccagcaccggcg 259
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 111/136 (81%) Strand = Plus / Plus Query: 231 atcgacgggggcggcatccgcggtctcatcccctccaccatcctcgcatgtctcgagtcc 290 |||||||| ||||||||| | || |||||||| |||||||||||| | |||||| || Sbjct: 15674992 atcgacggcggcggcatcaggggcctcatcccgggcaccatcctcgccttcctcgaggcc 15675051 Query: 291 aagctccaggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgcc 350 | ||| |||||||| || || || ||||||||| |||| || ||||||||| |||||| Sbjct: 15675052 aggctgcaggagctggatggccccgacgcgcgcctcgccgattacttcgactgcatcgcc 15675111 Query: 351 gggacgagcacgggcg 366 ||||| ||||| |||| Sbjct: 15675112 gggaccagcaccggcg 15675127 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 312 ccggacgcgcgcatcgcggactacttcgac 341 |||||||| ||| ||||||||||||||||| Sbjct: 8124240 ccggacgcccgcgtcgcggactacttcgac 8124269
>gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genomic sequence, complete sequence Length = 178748 Score = 71.9 bits (36), Expect = 2e-09 Identities = 111/136 (81%) Strand = Plus / Plus Query: 231 atcgacgggggcggcatccgcggtctcatcccctccaccatcctcgcatgtctcgagtcc 290 |||||||| ||||||||| | || |||||||| |||||||||||| | |||||| || Sbjct: 84946 atcgacggcggcggcatcaggggcctcatcccgggcaccatcctcgccttcctcgaggcc 85005 Query: 291 aagctccaggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgcc 350 | ||| |||||||| || || || ||||||||| |||| || ||||||||| |||||| Sbjct: 85006 aggctgcaggagctggatggccccgacgcgcgcctcgccgattacttcgactgcatcgcc 85065 Query: 351 gggacgagcacgggcg 366 ||||| ||||| |||| Sbjct: 85066 gggaccagcaccggcg 85081
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 111/136 (81%) Strand = Plus / Plus Query: 231 atcgacgggggcggcatccgcggtctcatcccctccaccatcctcgcatgtctcgagtcc 290 |||||||| ||||||||| | || |||||||| |||||||||||| | |||||| || Sbjct: 15669526 atcgacggcggcggcatcaggggcctcatcccgggcaccatcctcgccttcctcgaggcc 15669585 Query: 291 aagctccaggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgcc 350 | ||| |||||||| || || || ||||||||| |||| || ||||||||| |||||| Sbjct: 15669586 aggctgcaggagctggatggccccgacgcgcgcctcgccgattacttcgactgcatcgcc 15669645 Query: 351 gggacgagcacgggcg 366 ||||| ||||| |||| Sbjct: 15669646 gggaccagcaccggcg 15669661 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 312 ccggacgcgcgcatcgcggactacttcgac 341 |||||||| ||| ||||||||||||||||| Sbjct: 8122075 ccggacgcccgcgtcgcggactacttcgac 8122104
>dbj|AK069809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030J03, full insert sequence Length = 1526 Score = 71.9 bits (36), Expect = 2e-09 Identities = 111/136 (81%) Strand = Plus / Plus Query: 231 atcgacgggggcggcatccgcggtctcatcccctccaccatcctcgcatgtctcgagtcc 290 |||||||| ||||||||| | || |||||||| |||||||||||| | |||||| || Sbjct: 197 atcgacggcggcggcatcaggggcctcatcccgggcaccatcctcgccttcctcgaggcc 256 Query: 291 aagctccaggagctagacgggccggacgcgcgcatcgcggactacttcgacgtgatcgcc 350 | ||| |||||||| || || || ||||||||| |||| || ||||||||| |||||| Sbjct: 257 aggctgcaggagctggatggccccgacgcgcgcctcgccgattacttcgactgcatcgcc 316 Query: 351 gggacgagcacgggcg 366 ||||| ||||| |||| Sbjct: 317 gggaccagcaccggcg 332
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 330 gactacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgctggcg 389 |||||||||||| ||||||||||||||||| |||| |||| |||| |||||||||| Sbjct: 22405947 gactacttcgactacatcgccgggacgagcaccggcgggctgatcaccgcgatgctggcc 22406006 Query: 390 gcgccgggcg 399 ||||| |||| Sbjct: 22406007 gcgcccggcg 22406016 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 222 gtgctgagcatcgacgggggcggcatccg 250 ||||||| ||||||||| ||||||||||| Sbjct: 22451007 gtgctgaccatcgacggcggcggcatccg 22451035 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 219 acggtgctgagcatcgacgggggcggcatccg 250 |||||||||| |||||| || ||||||||||| Sbjct: 22405836 acggtgctgaccatcgatggcggcggcatccg 22405867 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 219 acggtgctgagcatcgacgggggcggcatccg 250 |||||||||| |||||| || ||||||||||| Sbjct: 22361102 acggtgctgaccatcgatggcggcggcatccg 22361071 Score = 40.1 bits (20), Expect = 7.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 330 gactacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgct 385 |||||||||||| |||||||| |||||||| |||| |||| |||| ||||||| Sbjct: 22360991 gactacttcgactacatcgccggcacgagcaccggcgggctgatcaccgcgatgct 22360936
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 330 gactacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgctggcg 389 |||||||||||| ||||||||||||||||| |||| |||| |||| |||||||||| Sbjct: 22334292 gactacttcgactacatcgccgggacgagcaccggcgggctgatcaccgcgatgctggcc 22334351 Query: 390 gcgccgggcg 399 ||||| |||| Sbjct: 22334352 gcgcccggcg 22334361 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 222 gtgctgagcatcgacgggggcggcatccg 250 ||||||| ||||||||| ||||||||||| Sbjct: 22379352 gtgctgaccatcgacggcggcggcatccg 22379380 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 219 acggtgctgagcatcgacgggggcggcatccg 250 |||||||||| |||||| || ||||||||||| Sbjct: 22334181 acggtgctgaccatcgatggcggcggcatccg 22334212 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 219 acggtgctgagcatcgacgggggcggcatccg 250 |||||||||| |||||| || ||||||||||| Sbjct: 22289447 acggtgctgaccatcgatggcggcggcatccg 22289416
>emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa0022K16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183414 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 330 gactacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgctggcg 389 |||||||||||| ||||||||||||||||| |||| |||| |||| |||||||||| Sbjct: 101587 gactacttcgactacatcgccgggacgagcaccggcgggctgatcaccgcgatgctggcc 101528 Query: 390 gcgccgggcg 399 ||||| |||| Sbjct: 101527 gcgcccggcg 101518 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 222 gtgctgagcatcgacgggggcggcatccg 250 ||||||| ||||||||| ||||||||||| Sbjct: 56527 gtgctgaccatcgacggcggcggcatccg 56499 Score = 40.1 bits (20), Expect = 7.6 Identities = 47/56 (83%) Strand = Plus / Plus Query: 330 gactacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgct 385 |||||||||||| |||||||| |||||||| |||| |||| |||| ||||||| Sbjct: 146543 gactacttcgactacatcgccggcacgagcaccggcgggctgatcaccgcgatgct 146598 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 219 acggtgctgagcatcgacgggggcggcatccg 250 |||||||||| |||||| || ||||||||||| Sbjct: 146432 acggtgctgaccatcgatggcggcggcatccg 146463 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 219 acggtgctgagcatcgacgggggcggcatccg 250 |||||||||| |||||| || ||||||||||| Sbjct: 101698 acggtgctgaccatcgatggcggcggcatccg 101667
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 363 ggcgcgctggtcacgtcgatgctggcg 389 ||||||||||||||| ||||||||||| Sbjct: 954092 ggcgcgctggtcacgccgatgctggcg 954066
>ref|XM_482956.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1218 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 324 atcgcggactacttcgacgtgatcgccgggacgagcac 361 ||||| |||||||||||||| ||||||| |||||||| Sbjct: 169 atcgctgactacttcgacgtcgtcgccggcacgagcac 206 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 225 ctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcgc 277 |||||||||||||| |||||| || | || ||||||| ||||||||||||| Sbjct: 70 ctgagcatcgacggcggcggcgtcagagggatcatcccggccaccatcctcgc 122
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 312 ccggacgcgcgcatcgcggactacttcgac 341 |||||||| ||| ||||||||||||||||| Sbjct: 55670 ccggacgcccgcgtcgcggactacttcgac 55699
>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1666_A04 Length = 90097 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Minus Query: 324 atcgcggactacttcgacgtgatcgccgggacgagcac 361 ||||| |||||||||||||| ||||||| |||||||| Sbjct: 20810 atcgctgactacttcgacgtcgtcgccggcacgagcac 20773 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 225 ctgagcatcgacgggggcggcatccgcggtctcatcccctccaccatcctcgc 277 |||||||||||||| |||||| || | || ||||||| ||||||||||||| Sbjct: 21004 ctgagcatcgacggcggcggcgtcagagggatcatcccggccaccatcctcgc 20952
>ref|XM_319089.2| Anopheles gambiae str. PEST ENSANGP00000022338 (ENSANGG00000019849), partial mRNA Length = 1098 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 225 ctgagcatcgacgggggcggcatccgcggt 254 |||||||| |||||||| |||||||||||| Sbjct: 127 ctgagcattgacgggggaggcatccgcggt 156
>gb|AC116600.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0036D19, complete sequence Length = 126686 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 ggaaagcacaagaacacaaga 24 ||||||||||||||||||||| Sbjct: 16130 ggaaagcacaagaacacaaga 16150
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 acgggccggacgcgcgcatcg 327 ||||||||||||||||||||| Sbjct: 1319525 acgggccggacgcgcgcatcg 1319505
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 acgggccggacgcgcgcatcg 327 ||||||||||||||||||||| Sbjct: 2142065 acgggccggacgcgcgcatcg 2142085
>gb|AC119166.16| Mus musculus chromosome 1, clone RP24-393L8, complete sequence Length = 163121 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 ccaagctccaggagctagacg 309 ||||||||||||||||||||| Sbjct: 79144 ccaagctccaggagctagacg 79164
>ref|XM_504286.1| Yarrowia lipolytica CLIB122, YALI0E22935g predicted mRNA Length = 1377 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 gccaaggacatcaacaacttc 443 ||||||||||||||||||||| Sbjct: 1327 gccaaggacatcaacaacttc 1347
>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence Length = 144359 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 ggaaagcacaagaacacaaga 24 ||||||||||||||||||||| Sbjct: 100489 ggaaagcacaagaacacaaga 100509
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 cgcatcgcggactacttcgac 341 ||||||||||||||||||||| Sbjct: 1338728 cgcatcgcggactacttcgac 1338748
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 375 acgtcgatgctggcggcgccgggcg 399 |||||||||||||||||||| |||| Sbjct: 364923 acgtcgatgctggcggcgcccggcg 364947
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 ggaaagcacaagaacacaaga 24 ||||||||||||||||||||| Sbjct: 3667648 ggaaagcacaagaacacaaga 3667668
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 caggcggacacgacgacgacgtgcc 192 ||||||| ||||||||||||||||| Sbjct: 6017999 caggcgggcacgacgacgacgtgcc 6018023 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 gatgctggcggcgccgggcg 399 |||||||||||||||||||| Sbjct: 3771663 gatgctggcggcgccgggcg 3771644 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cgacgacgtgcccgccgtcg 200 |||||||||||||||||||| Sbjct: 2992766 cgacgacgtgcccgccgtcg 2992747
>ref|XM_310468.2| Anopheles gambiae str. PEST ENSANGP00000019254 (ENSANGG00000016765), partial mRNA Length = 728 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 cgatgctggcggcgccgggcg 399 ||||||||||||||||||||| Sbjct: 340 cgatgctggcggcgccgggcg 360
>dbj|AK106375.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D02, full insert sequence Length = 1522 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 222 gtgctgagcatcgacgggggcggcatccg 250 ||||||| ||||||||| ||||||||||| Sbjct: 144 gtgctgaccatcgacggcggcggcatccg 172
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 ggactacttcgacgtgatcgc 349 ||||||||||||||||||||| Sbjct: 829450 ggactacttcgacgtgatcgc 829430
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 ggaaagcacaagaacacaaga 24 ||||||||||||||||||||| Sbjct: 3667569 ggaaagcacaagaacacaaga 3667589
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 gccaaggacatcaacaacttc 443 ||||||||||||||||||||| Sbjct: 2703679 gccaaggacatcaacaacttc 2703659
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 335 cttcgacgtgatcgccgggacgagcacg 362 ||||||||||| ||||||||||| |||| Sbjct: 2803805 cttcgacgtgaccgccgggacgatcacg 2803778
>emb|AL513304.27| Human DNA sequence from clone RP11-398B16 on chromosome 10 Contains part of the gene for double-stranded RNA specific adenosine deaminase (ADAR3), a novel gene and two CpG islands, complete sequence Length = 163243 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 agcagtgcagggcacaccccgtgc 148 |||| ||||||||||||||||||| Sbjct: 9602 agcaatgcagggcacaccccgtgc 9579
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gactacttcgacgtgatcgc 349 |||||||||||||||||||| Sbjct: 2174156 gactacttcgacgtgatcgc 2174137
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ccaggcggacacgacgacga 186 |||||||||||||||||||| Sbjct: 4144480 ccaggcggacacgacgacga 4144461
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 196 cgtcggcgcaggggcgactcatcacggt 223 |||||||||| |||| |||||||||||| Sbjct: 30361304 cgtcggcgcatgggcaactcatcacggt 30361277
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 cgtcgatgctggcggcgccgggcg 399 ||||||||||||||| |||||||| Sbjct: 1976807 cgtcgatgctggcggtgccgggcg 1976784
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 359 cacgggcgcgctggtcacgtcgat 382 ||||||||||||||||||| |||| Sbjct: 7018698 cacgggcgcgctggtcacgccgat 7018675
>gb|AF074603.2|AF074603 Streptomyces griseus subsp. griseus nonactin biosynthesis gene cluster, partial sequence Length = 15559 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 agacgggccggacgcgcgca 324 |||||||||||||||||||| Sbjct: 13203 agacgggccggacgcgcgca 13222
>emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298_D03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109610 Score = 40.1 bits (20), Expect = 7.6 Identities = 47/56 (83%) Strand = Plus / Plus Query: 330 gactacttcgacgtgatcgccgggacgagcacgggcgcgctggtcacgtcgatgct 385 |||||||||||| |||||||| |||||||| |||| |||| |||| ||||||| Sbjct: 763 gactacttcgactacatcgccggcacgagcaccggcgggctgatcaccgcgatgct 818 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 219 acggtgctgagcatcgacgggggcggcatccg 250 |||||||||| |||||| || ||||||||||| Sbjct: 652 acggtgctgaccatcgatggcggcggcatccg 683
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 196 cgtcggcgcaggggcgactcatcacggt 223 |||||||||| |||| |||||||||||| Sbjct: 111200 cgtcggcgcatgggcaactcatcacggt 111173
>gb|AC140948.1| Gallus gallus BAC clone TAM31-60A4 from chromosome ul, complete sequence Length = 91737 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 aggccaaggacatcaacaac 440 |||||||||||||||||||| Sbjct: 17829 aggccaaggacatcaacaac 17810
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tcgcggactacttcgacgtg 344 |||||||||||||||||||| Sbjct: 2627817 tcgcggactacttcgacgtg 2627798
>gb|L38827.1|CFIB14C Cellulomonas fimi ORF gene, 3' end of cds, beta-1, 4-cellobiohydrolase (CbhB) gene, complete cds Length = 3776 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tcgacgtgatcgccgggacg 356 |||||||||||||||||||| Sbjct: 2887 tcgacgtgatcgccgggacg 2868 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,132,222 Number of Sequences: 3902068 Number of extensions: 3132222 Number of successful extensions: 65862 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63787 Number of HSP's gapped (non-prelim): 2065 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
