ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
2gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
4dbj|AK102073.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
6emb|AL512307.12| Human DNA sequence from clone RP11-285B6 on chr... 42 1.9
7gb|AC116386.9| Mus musculus chromosome 15, clone RP23-37B16, com... 40 7.6
8gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, co... 40 7.6
9gb|AC165072.13| Mus musculus chromosome 18, clone RP23-345E17, c... 40 7.6
10gb|AC146377.5| Pan troglodytes BAC clone RP43-79B6 from 7, compl... 40 7.6
11gb|AC124190.4| Mus musculus BAC clone RP23-267M9 from 3, complet... 40 7.6
12gb|AC010126.3| Homo sapiens BAC clone GS1-502B2 from 7, complete... 40 7.6
13gb|AC116120.6| Mus musculus chromosome 6, clone RP23-78P7, compl... 40 7.6
14emb|BX294027.1|NCB8G12 Neurospora crassa DNA linkage group V BAC... 40 7.6
15gb|AC104996.4| Homo sapiens chromosome 17, clone RP11-1148O4, co... 40 7.6
16gb|AC021086.4|AC021086 Homo sapiens chromosome 5 clone CTD-2001C... 40 7.6
17gb|AC107977.13| Homo sapiens chromosome 15, clone CTD-2611K5, co... 40 7.6
18gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.6
19gb|AC010382.4|AC010382 Homo sapiens chromosome 5 clone CTD-2068C... 40 7.6

>gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAb0050G15,
              complete sequence
          Length = 126156

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                 
Query: 349    ctagacctcagcctcggcatctccttgtctcccgg 383
              ||||||||||||||||||||||||||||| |||||
Sbjct: 107817 ctagacctcagcctcggcatctccttgtcacccgg 107851



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>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0052C03, complete sequence
          Length = 157178

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                
Query: 349   ctagacctcagcctcggcatctccttgtctcccgg 383
             ||||||||||||||||||||||||||||| |||||
Sbjct: 41661 ctagacctcagcctcggcatctccttgtcacccgg 41695



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                  
Query: 349     ctagacctcagcctcggcatctccttgtctcccgg 383
               ||||||||||||||||||||||||||||| |||||
Sbjct: 6258383 ctagacctcagcctcggcatctccttgtcacccgg 6258417



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>dbj|AK102073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082G16, full
           insert sequence
          Length = 2984

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 349 ctagacctcagcctcggcatctccttgtctcccgg 383
           ||||||||||||||||||||||||||||| |||||
Sbjct: 311 ctagacctcagcctcggcatctccttgtcacccgg 345



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                  
Query: 349     ctagacctcagcctcggcatctccttgtctcccgg 383
               ||||||||||||||||||||||||||||| |||||
Sbjct: 6324850 ctagacctcagcctcggcatctccttgtcacccgg 6324884



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>emb|AL512307.12| Human DNA sequence from clone RP11-285B6 on chromosome 1 Contains part of
              the RGS7 gene for regulator of G-protein signalling 7,
              complete sequence
          Length = 182323

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 125    cctcttctcatatctgttgcttcca 149
              |||||||||||||||||||| ||||
Sbjct: 162320 cctcttctcatatctgttgcatcca 162344



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>gb|AC116386.9| Mus musculus chromosome 15, clone RP23-37B16, complete sequence
          Length = 185556

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   cacccctcctcttctcatat 137
             ||||||||||||||||||||
Sbjct: 23582 cacccctcctcttctcatat 23563



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>gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, complete sequence
          Length = 170539

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   cacccctcctcttctcatat 137
             ||||||||||||||||||||
Sbjct: 20528 cacccctcctcttctcatat 20547



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>gb|AC165072.13| Mus musculus chromosome 18, clone RP23-345E17, complete sequence
          Length = 223019

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     ccatctttctgctcaccaac 103
              ||||||||||||||||||||
Sbjct: 150283 ccatctttctgctcaccaac 150264



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>gb|AC146377.5| Pan troglodytes BAC clone RP43-79B6 from 7, complete sequence
          Length = 195459

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 283   gcagtcaccggcatgaaggtggca 306
             ||||||||| ||||||||||||||
Sbjct: 16186 gcagtcaccagcatgaaggtggca 16209



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>gb|AC124190.4| Mus musculus BAC clone RP23-267M9 from 3, complete sequence
          Length = 167681

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 460   ggtcgggtgcagggcagtgg 479
             ||||||||||||||||||||
Sbjct: 82283 ggtcgggtgcagggcagtgg 82264



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>gb|AC010126.3| Homo sapiens BAC clone GS1-502B2 from 7, complete sequence
          Length = 56163

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 283   gcagtcaccggcatgaaggtggca 306
             ||||||||| ||||||||||||||
Sbjct: 45501 gcagtcaccagcatgaaggtggca 45524



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>gb|AC116120.6| Mus musculus chromosome 6, clone RP23-78P7, complete sequence
          Length = 174411

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tctgctcaccaactcactca 110
             ||||||||||||||||||||
Sbjct: 60421 tctgctcaccaactcactca 60402



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>emb|BX294027.1|NCB8G12 Neurospora crassa DNA linkage group V BAC contig B8G12
          Length = 154038

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    atcaaccactaccactgcaccatc 35
             ||||||||| ||||||||||||||
Sbjct: 26993 atcaaccaccaccactgcaccatc 26970



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>gb|AC104996.4| Homo sapiens chromosome 17, clone RP11-1148O4, complete sequence
          Length = 155848

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   tcttctcatatctgttgctt 146
             ||||||||||||||||||||
Sbjct: 97761 tcttctcatatctgttgctt 97780



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>gb|AC021086.4|AC021086 Homo sapiens chromosome 5 clone CTD-2001C12, complete sequence
          Length = 137063

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    tcaaccactaccactgcacc 32
             ||||||||||||||||||||
Sbjct: 87003 tcaaccactaccactgcacc 86984



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>gb|AC107977.13| Homo sapiens chromosome 15, clone CTD-2611K5, complete sequence
          Length = 152619

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   ctcctcttctcatatctgtt 142
             ||||||||||||||||||||
Sbjct: 94784 ctcctcttctcatatctgtt 94803



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 109     cattcagctcacccctcctcttct 132
               ||||||||||| ||||||||||||
Sbjct: 2109372 cattcagctcagccctcctcttct 2109395



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>gb|AC010382.4|AC010382 Homo sapiens chromosome 5 clone CTD-2068C11, complete sequence
          Length = 151365

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     tcaaccactaccactgcacc 32
              ||||||||||||||||||||
Sbjct: 120609 tcaaccactaccactgcacc 120590


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,536,078
Number of Sequences: 3902068
Number of extensions: 4536078
Number of successful extensions: 76161
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76037
Number of HSP's gapped (non-prelim): 124
length of query: 558
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 535
effective length of database: 17,143,297,704
effective search space: 9171664271640
effective search space used: 9171664271640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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