ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YQJG_ECOLI (P42620) Hypothetical protein yqjG 75 8e-14
2ECM4_YEAST (P36156) Extracellular matrix protein 4 52 1e-06
3YM85_YEAST (Q04806) Hypothetical 42.4 kDa protein in FAA4-HOR7 i... 46 5e-05
4YK67_CAEEL (P34345) Hypothetical protein C29E4.7 in chromosome III 33 0.60
5IN21_MAIZE (P49248) IN2-1 protein 31 1.7
6GSTO1_RAT (Q9Z339) Glutathione transferase omega-1 (EC 2.5.1.18)... 31 2.3
7GSTO1_MOUSE (O09131) Glutathione transferase omega-1 (EC 2.5.1.1... 30 3.0
8GLRX2_SYNY3 (P73492) Probable glutaredoxin ssr2061 29 8.6

>YQJG_ECOLI (P42620) Hypothetical protein yqjG|
          Length = 328

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 50/129 (38%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
 Frame = +1

Query: 145 DEVTDTGAFDRTPSTFRSFVSSDGA------ARFPAVAGRYHLYVSYACPWASRCLAYLK 306
           D  +  G F R+ S FR+++++DGA        F A   RYHLYVS ACPWA R L   K
Sbjct: 15  DTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRK 74

Query: 307 LKGLDHAISFSSVKPIFERTRESDDHLGWVFPAAAGEVPGADPDPFNGARSVRDLYEIAS 486
           LKGL+  IS S V P+           GW F       PGA  D       +  LY  A 
Sbjct: 75  LKGLEPFISVSVVNPLMLEN-------GWTFD---DSFPGATGDTLYQNEFLYQLYLHAD 124

Query: 487 KNYTGKPTV 513
            +Y+G+ TV
Sbjct: 125 PHYSGRVTV 133



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>ECM4_YEAST (P36156) Extracellular matrix protein 4|
          Length = 370

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 31/61 (50%), Positives = 33/61 (54%)
 Frame = +1

Query: 163 GAFDRTPSTFRSFVSSDGAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFSS 342
           GAF R  S+FR  +S       PA  GRY LYVS ACPWA R L    LKGL   I  S 
Sbjct: 11  GAFKRQVSSFRETISKQHPIYKPA-KGRYWLYVSLACPWAHRTLITRALKGLTSVIGCSV 69

Query: 343 V 345
           V
Sbjct: 70  V 70



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>YM85_YEAST (Q04806) Hypothetical 42.4 kDa protein in FAA4-HOR7 intergenic|
           region
          Length = 366

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 27/57 (47%), Positives = 30/57 (52%)
 Frame = +1

Query: 169 FDRTPSTFRSFVSSDGAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFS 339
           F R  S FR  +S+D     PA  GRY LYV+  CPWA R L    LKGL   I  S
Sbjct: 13  FKRQSSPFREIISADHPIYKPA-KGRYWLYVALPCPWAQRTLITRALKGLAPIIGCS 68



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>YK67_CAEEL (P34345) Hypothetical protein C29E4.7 in chromosome III|
          Length = 250

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 214 GAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLD 321
           G A  P   G + +Y    CPWA R + Y+  KG++
Sbjct: 14  GDAEPPLSKGSFRVYNMRFCPWAERAMLYVAAKGIE 49



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>IN21_MAIZE (P49248) IN2-1 protein|
          Length = 243

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
 Frame = +1

Query: 229 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFSSVKPIFERTRESDDHLGWVFPA- 405
           P   G   LY+ Y CP+A R      LKGL   +   ++        +  D   W     
Sbjct: 27  PVFDGTTRLYICYFCPFAQRAWVTRNLKGLQDKMELVAI--------DLQDKPAWYKDKV 78

Query: 406 -AAGEVPGADPDPFNGARSVRDLYEIASKNYTG 501
            A G VP  + D      S+ DL      N+ G
Sbjct: 79  YAQGTVPSLEHDSEVRGESL-DLIRYIDSNFDG 110



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>GSTO1_RAT (Q9Z339) Glutathione transferase omega-1 (EC 2.5.1.18) (GSTO 1-1)|
           (Glutathione-dependent dehydroascorbate reductase)
          Length = 241

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 229 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAI 330
           P   G+  +Y    CP+A R L  LK KG+ H I
Sbjct: 18  PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEI 51



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>GSTO1_MOUSE (O09131) Glutathione transferase omega-1 (EC 2.5.1.18) (GSTO 1-1)|
           (p28)
          Length = 240

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 229 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAI 330
           P   G+  +Y    CP+A R L  LK KG+ H +
Sbjct: 18  PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEV 51



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>GLRX2_SYNY3 (P73492) Probable glutaredoxin ssr2061|
          Length = 88

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 232 AVAGRYHLYVSYACPWASRCLAYLKLKGLD 321
           AV+ +  +Y    CP+  R LA LK KG++
Sbjct: 2   AVSAKIEIYTWSTCPFCMRALALLKRKGVE 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,461,947
Number of Sequences: 219361
Number of extensions: 568236
Number of successful extensions: 2399
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2397
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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