Clone Name | bart44c01 |
---|---|
Clone Library Name | barley_pub |
>gb|AY105780.1| Zea mays PCO081534 mRNA sequence Length = 1009 Score = 325 bits (164), Expect = 8e-86 Identities = 304/351 (86%), Gaps = 6/351 (1%) Strand = Plus / Plus Query: 136 tcggcgctggacgaggtgaccgacaccggcgccttcgaccggacgccgtccaccttccgg 195 ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| Sbjct: 124 tcggcgctggacgaggtcaccgacacgggcgccttcgaccggtcgccgtccaccttccgg 183 Query: 196 agcttcgtgtccagcgacggcgccgcccgcttcccggccgtggccggcaggtaccacctc 255 |||| ||| ||||| ||||| || ||||| |||||||| || ||||||||||| Sbjct: 184 agctccgtttccagggacggg------cggttccccgccgtggcggggcggtaccacctc 237 Query: 256 tacgtctcctacgcctgcccctgggcctcccgctgcctcgcctacctcaagctcaagggc 315 |||||||| ||||| ||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct: 238 tacgtctcgtacgcgtgcccctgggcgtcccggtgcctcgccttcctcaagctcaagggc 297 Query: 316 ctcgaccacgccatctccttctcgtcggtgaagcccatcttcgagcggaccagggagtcg 375 ||||||||||||||| | || || | |||||||| |||||||||||||||| |||| Sbjct: 298 ctcgaccacgccatcggcgtcacggccgtgaagcctatcttcgagcggaccaaggagagc 357 Query: 376 gacgaccacctggggtgggtgttcccggccgccgccggcgaggtgcccggcgccgacccc 435 ||||| || ||||| ||||||||||| |||||||||| ||||| |||||||||||| ||| Sbjct: 358 gacgagcatctgggctgggtgttccccgccgccgccgacgaggagcccggcgccgagccc 417 Query: 436 gaccccttcaacggcgccaggagcgtcagggacctctacgagatcgccagc 486 ||||| ||||||||||| ||||||| ||||| || ||||||||||||||| Sbjct: 418 gaccctctcaacggcgcccggagcgtgagggagctatacgagatcgccagc 468
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 242 bits (122), Expect = 9e-61 Identities = 185/206 (89%) Strand = Plus / Minus Query: 125 agatggcccgctcggcgctggacgaggtgaccgacaccggcgccttcgaccggacgccgt 184 ||||||| || |||||||| |||||||| |||||| ||||||||||||||||| |||||| Sbjct: 12733790 agatggctcggtcggcgctcgacgaggtcaccgacgccggcgccttcgaccggtcgccgt 12733731 Query: 185 ccaccttccggagcttcgtgtccagcgacggcgccgcccgcttcccggccgtggccggca 244 ||||||||||||||| | ||||| ||| || ||||||| ||||| |||||| | || | Sbjct: 12733730 ccaccttccggagctctatctccagggacagctccgcccggttccccgccgtgccgggga 12733671 Query: 245 ggtaccacctctacgtctcctacgcctgcccctgggcctcccgctgcctcgcctacctca 304 ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 12733670 ggtaccacctctacgtctcctacgcgtgcccctgggcgtcacgctgcctcgcctacctca 12733611 Query: 305 agctcaagggcctcgaccacgccatc 330 |||||||||||||||||||||||||| Sbjct: 12733610 agctcaagggcctcgaccacgccatc 12733585 Score = 87.7 bits (44), Expect = 3e-14 Identities = 119/144 (82%) Strand = Plus / Minus Query: 343 gtgaagcccatcttcgagcggaccagggagtcggacgaccacctggggtgggtgttcccg 402 |||||||||||||| ||| ||||||||||| |||||||||| || |||||||| || ||| Sbjct: 12733475 gtgaagcccatctttgagaggaccagggagacggacgaccatcttgggtgggtttttccg 12733416 Query: 403 gccgccgccggcgaggtgcccggcgccgaccccgaccccttcaacggcgccaggagcgtc 462 ||| ||| | ||| | ||||||||| ||||| || || |||||||| |||| || | || Sbjct: 12733415 gccaccggagacgaagagcccggcgcagacccggatcctttcaacggagccaagaccatc 12733356 Query: 463 agggacctctacgagatcgccagc 486 ||||| || || ||||| |||||| Sbjct: 12733355 agggagctatatgagattgccagc 12733332 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 195 gagcttcgtgtccagcgacggcgccgcc 222 |||||||||||||| || |||||||||| Sbjct: 19917631 gagcttcgtgtccatcggcggcgccgcc 19917658 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 63 cgccgccgccaggacgctctccgccgcc 90 |||||||||| ||||||||||| ||||| Sbjct: 12733957 cgccgccgcccggacgctctccaccgcc 12733930
>dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0086N11 Length = 146185 Score = 242 bits (122), Expect = 9e-61 Identities = 185/206 (89%) Strand = Plus / Minus Query: 125 agatggcccgctcggcgctggacgaggtgaccgacaccggcgccttcgaccggacgccgt 184 ||||||| || |||||||| |||||||| |||||| ||||||||||||||||| |||||| Sbjct: 82067 agatggctcggtcggcgctcgacgaggtcaccgacgccggcgccttcgaccggtcgccgt 82008 Query: 185 ccaccttccggagcttcgtgtccagcgacggcgccgcccgcttcccggccgtggccggca 244 ||||||||||||||| | ||||| ||| || ||||||| ||||| |||||| | || | Sbjct: 82007 ccaccttccggagctctatctccagggacagctccgcccggttccccgccgtgccgggga 81948 Query: 245 ggtaccacctctacgtctcctacgcctgcccctgggcctcccgctgcctcgcctacctca 304 ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct: 81947 ggtaccacctctacgtctcctacgcgtgcccctgggcgtcacgctgcctcgcctacctca 81888 Query: 305 agctcaagggcctcgaccacgccatc 330 |||||||||||||||||||||||||| Sbjct: 81887 agctcaagggcctcgaccacgccatc 81862 Score = 87.7 bits (44), Expect = 3e-14 Identities = 119/144 (82%) Strand = Plus / Minus Query: 343 gtgaagcccatcttcgagcggaccagggagtcggacgaccacctggggtgggtgttcccg 402 |||||||||||||| ||| ||||||||||| |||||||||| || |||||||| || ||| Sbjct: 81752 gtgaagcccatctttgagaggaccagggagacggacgaccatcttgggtgggtttttccg 81693 Query: 403 gccgccgccggcgaggtgcccggcgccgaccccgaccccttcaacggcgccaggagcgtc 462 ||| ||| | ||| | ||||||||| ||||| || || |||||||| |||| || | || Sbjct: 81692 gccaccggagacgaagagcccggcgcagacccggatcctttcaacggagccaagaccatc 81633 Query: 463 agggacctctacgagatcgccagc 486 ||||| || || ||||| |||||| Sbjct: 81632 agggagctatatgagattgccagc 81609 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 63 cgccgccgccaggacgctctccgccgcc 90 |||||||||| ||||||||||| ||||| Sbjct: 82234 cgccgccgcccggacgctctccaccgcc 82207
>gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the complete genome Length = 12204 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 247 taccacctctacgtctcctacgcctgcccctgggcc 282 ||||||||||||||||||||||||||||| |||||| Sbjct: 7026 taccacctctacgtctcctacgcctgcccgtgggcc 6991
>ref|XM_363484.1| Magnaporthe grisea 70-15 hypothetical protein (MG01410.4) partial mRNA Length = 1035 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 303 caagctcaagggcctcgaccacgccatctccttctcgtcggtg 345 |||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 201 caagctcaagggcctcgaggacgtcatctccttctcgtcggtg 243 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 247 taccacctctacgtctcctacgcctgcccctgggc 281 |||||||| ||||| || ||||||||||||||||| Sbjct: 145 taccacctgtacgtgtcgtacgcctgcccctgggc 179
>gb|AE009175.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 201 of 256 of the complete sequence Length = 12407 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 247 taccacctctacgtctcctacgcctgcccctgggc 281 ||||||||||| ||||||| ||||||||| ||||| Sbjct: 9916 taccacctctatgtctccttcgcctgcccgtgggc 9950
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 247 taccacctctacgtctcctacgcctgcccctgggc 281 ||||||||||| ||||||| ||||||||| ||||| Sbjct: 2233890 taccacctctatgtctccttcgcctgcccgtgggc 2233924 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 149 aggtgaccgacaccggcgccttcga 173 |||||||||||||||||||| |||| Sbjct: 1313557 aggtgaccgacaccggcgccatcga 1313581
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Plus Query: 224 gcttcccggccgtggccggcaggtaccacctctacgtctcctacgcctgcccctgggcc 282 |||| ||||||| ||||||| | |||| || ||||| ||||| ||||||||||||||| Sbjct: 450916 gctttccggccgaggccggccgctaccggctttacgtgtcctatgcctgcccctgggcc 450974 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gccgccggcgaggtgcccggc 426 ||||||||||||||||||||| Sbjct: 3078721 gccgccggcgaggtgcccggc 3078701
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 401 cggccgccgccggcgaggtgcccggcg 427 |||||||||||||| |||||||||||| Sbjct: 3536850 cggccgccgccggcaaggtgcccggcg 3536824 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 cgacggcgccgcccgcttcc 229 |||||||||||||||||||| Sbjct: 841138 cgacggcgccgcccgcttcc 841119
>ref|XM_478656.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2985 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 324 cgccatctccttctcgtcggtg 345 |||||||||||||||||||||| Sbjct: 352 cgccatctccttctcgtcggtg 331
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 153 gaccgacaccggcgccttcgac 174 |||||||||||||||||||||| Sbjct: 144408 gaccgacaccggcgccttcgac 144387
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 401 cggccgccgccggcgaggtgcccggc 426 ||||||||||| |||||||||||||| Sbjct: 1448370 cggccgccgccagcgaggtgcccggc 1448345
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 324 cgccatctccttctcgtcggtg 345 |||||||||||||||||||||| Sbjct: 21861355 cgccatctccttctcgtcggtg 21861376 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gccgccgccggcgaggtgcccggc 426 |||||||||||||||| ||||||| Sbjct: 18674467 gccgccgccggcgaggagcccggc 18674490
>dbj|AK067424.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107C16, full insert sequence Length = 2986 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 324 cgccatctccttctcgtcggtg 345 |||||||||||||||||||||| Sbjct: 352 cgccatctccttctcgtcggtg 331
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041B22 Length = 142446 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 324 cgccatctccttctcgtcggtg 345 |||||||||||||||||||||| Sbjct: 75031 cgccatctccttctcgtcggtg 75052
>gb|AE009094.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 120 of 256 of the complete sequence Length = 10902 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 149 aggtgaccgacaccggcgccttcga 173 |||||||||||||||||||| |||| Sbjct: 2503 aggtgaccgacaccggcgccatcga 2527
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 ccggcgccttcgaccggacgc 181 ||||||||||||||||||||| Sbjct: 75059 ccggcgccttcgaccggacgc 75079
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 421 cccggcgccgaccccgacccc 441 ||||||||||||||||||||| Sbjct: 65433 cccggcgccgaccccgacccc 65413
>gb|AE005951.1| Caulobacter crescentus CB15 section 277 of 359 of the complete genome Length = 10783 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 gggtgttcccggccgccgccg 412 ||||||||||||||||||||| Sbjct: 3667 gggtgttcccggccgccgccg 3687
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 ccggcgccgaccccgacccct 442 ||||||||||||||||||||| Sbjct: 568892 ccggcgccgaccccgacccct 568872
>gb|U27302.2|CCU27302 Caulobacter crescentus FLAR protein (flaR) and FLAZ protein (flaZ) genes, complete cds; and unknown genes Length = 5081 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 gggtgttcccggccgccgccg 412 ||||||||||||||||||||| Sbjct: 4281 gggtgttcccggccgccgccg 4301
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 cccggccgccgccggcgagg 418 |||||||||||||||||||| Sbjct: 3779496 cccggccgccgccggcgagg 3779477
>ref|NM_125710.2| Arabidopsis thaliana unknown protein AT5G63150 mRNA, complete cds Length = 645 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctcttcctcctcctccaacg 121 |||||||||||||||||||| Sbjct: 350 ctcttcctcctcctccaacg 331
>ref|XM_493912.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 879 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 411 cggcgaggtgcccggcgccgaccccgac 438 ||||||||| |||||||||||| ||||| Sbjct: 579 cggcgaggtccccggcgccgacgccgac 552
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 gctcaagggcctcgaccacg 325 |||||||||||||||||||| Sbjct: 1785348 gctcaagggcctcgaccacg 1785329
>ref|XM_478223.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1635 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gccgccgccggcgaggtgcccggc 426 |||||||||||||||| ||||||| Sbjct: 60 gccgccgccggcgaggagcccggc 83
>ref|XM_471398.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2313 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ccggcgccgaccccgacccc 441 |||||||||||||||||||| Sbjct: 61 ccggcgccgaccccgacccc 42
>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16, complete sequence Length = 139615 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tcaagctcaagggcctcgac 321 |||||||||||||||||||| Sbjct: 131613 tcaagctcaagggcctcgac 131594
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, complete sequence Length = 166052 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tcaagctcaagggcctcgac 321 |||||||||||||||||||| Sbjct: 50733 tcaagctcaagggcctcgac 50714
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01, complete sequence Length = 122768 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 411 cggcgaggtgcccggcgccgaccccgac 438 ||||||||| |||||||||||| ||||| Sbjct: 4600 cggcgaggtccccggcgccgacgccgac 4627
>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence Length = 159632 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 403 gccgccgccggcgaggtgcccggcgccg 430 |||||||||||||| ||| ||||||||| Sbjct: 101100 gccgccgccggcgacgtggccggcgccg 101127
>gb|BT025604.1| Arabidopsis thaliana At5g63150 mRNA, complete cds Length = 417 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctcttcctcctcctccaacg 121 |||||||||||||||||||| Sbjct: 306 ctcttcctcctcctccaacg 287
>gb|AC182645.3| Pan troglodytes BAC clone CH251-7F19 from chromosome 10, complete sequence Length = 221731 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 gcgaggtgcccggcgccgac 432 |||||||||||||||||||| Sbjct: 91080 gcgaggtgcccggcgccgac 91099
>ref|XM_323720.1| Neurospora crassa OR74A hypothetical protein (NCU04368.1) partial mRNA Length = 1041 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 247 taccacctctacgtctcctacgcctgcccctgggcc 282 ||||||||||||||| ||||||||| || |||||| Sbjct: 139 taccacctctacgtcagctacgcctgtccgtgggcc 174
>ref|XM_951048.1| Neurospora crassa OR74A hypothetical protein (NCU04368.1) partial mRNA Length = 1041 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 247 taccacctctacgtctcctacgcctgcccctgggcc 282 ||||||||||||||| ||||||||| || |||||| Sbjct: 139 taccacctctacgtcagctacgcctgtccgtgggcc 174
>ref|XM_957106.1| Neurospora crassa OR74A hypothetical protein (NCU05200.1) partial mRNA Length = 3081 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 cgaccacgccatctccttct 337 |||||||||||||||||||| Sbjct: 2607 cgaccacgccatctccttct 2626
>gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome Length = 58638 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ctccgccgccggtgccggac 100 |||||||||||||||||||| Sbjct: 47727 ctccgccgccggtgccggac 47746
>ref|XM_324556.1| Neurospora crassa OR74A hypothetical protein (NCU05200.1) partial mRNA Length = 3081 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 cgaccacgccatctccttct 337 |||||||||||||||||||| Sbjct: 2607 cgaccacgccatctccttct 2626
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ggccgccgccggcgaggtgc 421 |||||||||||||||||||| Sbjct: 3313269 ggccgccgccggcgaggtgc 3313288
>emb|CR731908.2|CNS0GROP Tetraodon nigroviridis full-length cDNA Length = 1074 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 646 gacactcttcctcctcctcc 665
>emb|CR729371.2|CNS0GPQ9 Tetraodon nigroviridis full-length cDNA Length = 1051 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 628 gacactcttcctcctcctcc 647
>emb|CR729223.2|CNS0GPM5 Tetraodon nigroviridis full-length cDNA Length = 1050 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 622 gacactcttcctcctcctcc 641
>emb|CR728218.2|CNS0GOU8 Tetraodon nigroviridis full-length cDNA Length = 1056 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 626 gacactcttcctcctcctcc 645
>emb|CR727266.2|CNS0GO3S Tetraodon nigroviridis full-length cDNA Length = 1049 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 627 gacactcttcctcctcctcc 646
>emb|CR726337.2|CNS0GNDZ Tetraodon nigroviridis full-length cDNA Length = 1066 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 640 gacactcttcctcctcctcc 659
>emb|CR725445.2|CNS0GMP7 Tetraodon nigroviridis full-length cDNA Length = 1068 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 641 gacactcttcctcctcctcc 660
>emb|CR723475.2|CNS0GL6H Tetraodon nigroviridis full-length cDNA Length = 1077 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 647 gacactcttcctcctcctcc 666
>emb|CR704716.1|CNS0G6PK Tetraodon nigroviridis full-length cDNA Length = 1075 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 641 gacactcttcctcctcctcc 660
>emb|CR701285.2|CNS0G429 Tetraodon nigroviridis full-length cDNA Length = 1065 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 633 gacactcttcctcctcctcc 652
>emb|CR700352.1|CNS0G3CC Tetraodon nigroviridis full-length cDNA Length = 1065 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 639 gacactcttcctcctcctcc 658
>emb|CR697892.2|CNS0G1G0 Tetraodon nigroviridis full-length cDNA Length = 1076 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 640 gacactcttcctcctcctcc 659
>emb|CR697020.2|CNS0G0RS Tetraodon nigroviridis full-length cDNA Length = 1049 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 636 gacactcttcctcctcctcc 655
>emb|CR695754.2|CNS0FZSM Tetraodon nigroviridis full-length cDNA Length = 1116 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 628 gacactcttcctcctcctcc 647
>emb|CR694631.2|CNS0FYXF Tetraodon nigroviridis full-length cDNA Length = 1114 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 628 gacactcttcctcctcctcc 647
>emb|CR683205.2|CNS0FQ41 Tetraodon nigroviridis full-length cDNA Length = 1114 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 627 gacactcttcctcctcctcc 646
>emb|CR671796.2|CNS0FHBU Tetraodon nigroviridis full-length cDNA Length = 1083 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 644 gacactcttcctcctcctcc 663
>emb|CR665468.2|CNS0FCG2 Tetraodon nigroviridis full-length cDNA Length = 1059 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 621 gacactcttcctcctcctcc 640
>emb|CR662176.2|CNS0F9WM Tetraodon nigroviridis full-length cDNA Length = 1083 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 643 gacactcttcctcctcctcc 662
>gb|AC090469.9| Homo sapiens chromosome 11, clone RP11-734J23, complete sequence Length = 215308 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 actcttcctcctcctccaac 120 |||||||||||||||||||| Sbjct: 29351 actcttcctcctcctccaac 29370
>emb|CR646436.2|CNS0EXRE Tetraodon nigroviridis full-length cDNA Length = 1065 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 638 gacactcttcctcctcctcc 657
>emb|CR639712.2|CNS0ESKM Tetraodon nigroviridis full-length cDNA Length = 1073 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 643 gacactcttcctcctcctcc 662
>emb|CR638617.2|CNS0ERQ7 Tetraodon nigroviridis full-length cDNA Length = 1099 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 671 gacactcttcctcctcctcc 690
>emb|CR634689.2|CNS0EOP3 Tetraodon nigroviridis full-length cDNA Length = 1078 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gacactcttcctcctcctcc 117 |||||||||||||||||||| Sbjct: 649 gacactcttcctcctcctcc 668
>emb|BX908809.1| Neurospora crassa DNA linkage group IV Cosmid contig 29E8 Length = 197698 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 247 taccacctctacgtctcctacgcctgcccctgggcc 282 ||||||||||||||| ||||||||| || |||||| Sbjct: 159309 taccacctctacgtcagctacgcctgtccgtgggcc 159344
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 ctcggcgctggacgaggtgaccga 158 |||||||||||||| ||||||||| Sbjct: 275518 ctcggcgctggacgcggtgaccga 275541
>emb|AJ440002.1|OSA440002 Oryza sativa (japonica cultivar-group) a4 gene for plasma membrane H+ ATPase, exons 1-12 Length = 3894 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcaagctcaagggcctcgac 321 |||||||||||||||||||| Sbjct: 3842 tcaagctcaagggcctcgac 3861
>gb|AF461063.2| Takifugu rubripes HSPC019 (HSPC019), nuclear receptor 2E1 (NR2E1), and sorting nexin 3 (SNX3) genes; and lactation elevated 1 (LACE1) gene, partial cds Length = 46064 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ggacgaccacctggggtggg 394 |||||||||||||||||||| Sbjct: 29204 ggacgaccacctggggtggg 29223
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 agcgacggcgccgcccgcttcccg 231 ||||||||||||||||||| |||| Sbjct: 4419151 agcgacggcgccgcccgctgcccg 4419128
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ccggcgccgaccccgacccc 441 |||||||||||||||||||| Sbjct: 10677737 ccggcgccgaccccgacccc 10677718
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 403 gccgccgccggcgaggtgcccggcgccg 430 |||||||||||||| ||| ||||||||| Sbjct: 2821293 gccgccgccggcgacgtggccggcgccg 2821320
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tcaagctcaagggcctcgac 321 |||||||||||||||||||| Sbjct: 14715319 tcaagctcaagggcctcgac 14715300 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 411 cggcgaggtgcccggcgccgaccccgac 438 ||||||||| |||||||||||| ||||| Sbjct: 1048989 cggcgaggtccccggcgccgacgccgac 1049016
>emb|AL731583.2|OSJN00231 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013A04, complete sequence Length = 188209 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ccggcgccgaccccgacccc 441 |||||||||||||||||||| Sbjct: 76964 ccggcgccgaccccgacccc 76945
>emb|BX832973.1|CNS09ZBS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL27ZB06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 627 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctcttcctcctcctccaacg 121 |||||||||||||||||||| Sbjct: 361 ctcttcctcctcctccaacg 342
>emb|BX833000.1|CNS09Z7Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL29ZA06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 617 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctcttcctcctcctccaacg 121 |||||||||||||||||||| Sbjct: 322 ctcttcctcctcctccaacg 303
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gtgcccggcgccgaccccga 437 |||||||||||||||||||| Sbjct: 4703107 gtgcccggcgccgaccccga 4703126
>gb|AY085623.1| Arabidopsis thaliana clone 16323 mRNA, complete sequence Length = 564 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctcttcctcctcctccaacg 121 |||||||||||||||||||| Sbjct: 350 ctcttcctcctcctccaacg 331
>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1197_D06 Length = 103844 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gccgccgccggcgaggtgcccggc 426 |||||||||||||||| ||||||| Sbjct: 99521 gccgccgccggcgaggagcccggc 99544
>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0508B05 Length = 166165 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 195 gagcttcgtgtccagcgacggcgccgcc 222 |||||||||||||| || |||||||||| Sbjct: 95232 gagcttcgtgtccatcggcggcgccgcc 95259
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 ccgacaccggcgccttcgaccgga 178 |||||||||||| ||||||||||| Sbjct: 1055110 ccgacaccggcgacttcgaccgga 1055133
>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0055I24 Length = 155872 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gccgccgccggcgaggtgcccggc 426 |||||||||||||||| ||||||| Sbjct: 6755 gccgccgccggcgaggagcccggc 6778
>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014M17 Length = 156778 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 195 gagcttcgtgtccagcgacggcgccgcc 222 |||||||||||||| || |||||||||| Sbjct: 21752 gagcttcgtgtccatcggcggcgccgcc 21779
>dbj|AB008265.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDC12 Length = 81662 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctcttcctcctcctccaacg 121 |||||||||||||||||||| Sbjct: 39184 ctcttcctcctcctccaacg 39165
>dbj|AK121904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105I05, full insert sequence Length = 1204 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 411 cggcgaggtgcccggcgccgaccccgac 438 ||||||||| |||||||||||| ||||| Sbjct: 639 cggcgaggtccccggcgccgacgccgac 612
>dbj|AB042103.1| Asparagus officinalis AoPOX1 mRNA for peroxidase, complete cds Length = 1159 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcaagctcaagggcctcgac 321 |||||||||||||||||||| Sbjct: 533 tcaagctcaagggcctcgac 552
>dbj|AK109843.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E03, full insert sequence Length = 2896 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ccggcgccgaccccgacccc 441 |||||||||||||||||||| Sbjct: 334 ccggcgccgaccccgacccc 315
>dbj|AK100483.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097B04, full insert sequence Length = 3538 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcaagctcaagggcctcgac 321 |||||||||||||||||||| Sbjct: 3101 tcaagctcaagggcctcgac 3120
>dbj|AK099106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028O04, full insert sequence Length = 1472 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcaagctcaagggcctcgac 321 |||||||||||||||||||| Sbjct: 1153 tcaagctcaagggcctcgac 1172
>dbj|AK073263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024K20, full insert sequence Length = 1635 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gccgccgccggcgaggtgcccggc 426 |||||||||||||||| ||||||| Sbjct: 60 gccgccgccggcgaggagcccggc 83
>dbj|AK069666.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028O05, full insert sequence Length = 1472 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcaagctcaagggcctcgac 321 |||||||||||||||||||| Sbjct: 1153 tcaagctcaagggcctcgac 1172
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggcgccgcccgcttcccggc 233 |||||||||||||||||||| Sbjct: 282484 ggcgccgcccgcttcccggc 282465
>emb|BX784029.5| Zebrafish DNA sequence from clone DKEY-21H14 in linkage group 4, complete sequence Length = 219903 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ctcctcctccaacgtcaaga 127 |||||||||||||||||||| Sbjct: 57526 ctcctcctccaacgtcaaga 57545
>gb|AY104577.1| Zea mays PCO137756 mRNA sequence Length = 1308 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcaagctcaagggcctcgac 321 |||||||||||||||||||| Sbjct: 1183 tcaagctcaagggcctcgac 1202
>dbj|AB008466.1| Streptomyces galilaeus aklavinone-aclacinomycin biosynthesis gene cluster, complete cds Length = 25883 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 cgacaccggcgccttcgaccggac 179 ||||||||||| |||||||||||| Sbjct: 19300 cgacaccggcggcttcgaccggac 19323
>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04 Length = 175439 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 411 cggcgaggtgcccggcgccgaccccgac 438 ||||||||| |||||||||||| ||||| Sbjct: 139386 cggcgaggtccccggcgccgacgccgac 139413
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cgcccgcttcccggccgtggccgg 242 |||||||||||||||||| ||||| Sbjct: 3421739 cgcccgcttcccggccgttgccgg 3421762
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 403 gccgccgccggcgaggtgcccggcgccg 430 |||||||||||||| ||| ||||||||| Sbjct: 2830324 gccgccgccggcgacgtggccggcgccg 2830351
>emb|AL049652.28|HSJ1169J3 Human DNA sequence from clone RP5-1169J3 on chromosome 11p13, complete sequence Length = 139512 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 actcttcctcctcctccaac 120 |||||||||||||||||||| Sbjct: 21729 actcttcctcctcctccaac 21748 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,075,304 Number of Sequences: 3902068 Number of extensions: 4075304 Number of successful extensions: 167620 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 163599 Number of HSP's gapped (non-prelim): 4020 length of query: 514 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 491 effective length of database: 17,143,297,704 effective search space: 8417359172664 effective search space used: 8417359172664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)