ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHOSP_NDVB (P24698) Phosphoprotein (Protein P) 30 2.3
2Y147_HAEIN (P44543) Putative TRAP transporter permease protein H... 29 5.2
3TRH_MOUSE (Q62361) Thyroliberin precursor [Contains: Prothyrolib... 29 6.8
4ENAM_PIG (O97939) Enamelin precursor [Contains: 89 kDa enamelin;... 29 6.8
5YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific... 28 8.9

>PHOSP_NDVB (P24698) Phosphoprotein (Protein P)|
          Length = 395

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 326 AWTNHGQQEPPAQQN-PRYFTRNNDQPSPPRSS 231
           AW  HG  +PPA Q+ P    R++ QPS P  +
Sbjct: 50  AWEKHGSIQPPASQDTPDRQDRSDKQPSTPEQA 82



to top

>Y147_HAEIN (P44543) Putative TRAP transporter permease protein HI0147|
          Length = 633

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 278 WGFAALEVLAGHGLSRHAEAQSLSFMKIATHLRRCCFLQSFSVVFLYYFY 427
           W FAAL V+A   + R  +AQ+L+F    ++L    F+ S  ++F   F+
Sbjct: 140 WIFAALPVVAILMMFRFIQAQTLNFKTGKSYLPATFFIISAVILFAILFF 189



to top

>TRH_MOUSE (Q62361) Thyroliberin precursor [Contains: Prothyroliberin;|
           Thyroliberin (Thyrotropin-releasing hormone) (TRH)
           (Thyrotropin-releasing factor) (TRF) (TSH-releasing
           factor) (Protirelin)]
          Length = 256

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 186 EILLGRT*KRERPGRGLRDSKPRWDQEGDS 97
           E+   R  KR+ PGR     K  W  EGDS
Sbjct: 99  EVGAWRPHKRQHPGRRANQDKDSWSDEGDS 128



to top

>ENAM_PIG (O97939) Enamelin precursor [Contains: 89 kDa enamelin; 142 kDa|
           enamelin; 155 kDa enamelin; 56 kDa enamelin; 32 kDa
           enamelin; 25 kDa enamelin; 34 kDa enamelin]
          Length = 1142

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 241 GGEGWS-LFRVKYLGFCCAGGSCWP 312
           GG+  S +F +   G CCAGGS WP
Sbjct: 853 GGQKESHVFHLSQRGPCCAGGSMWP 877



to top

>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding|
           protein) (FRGY2 homolog)
          Length = 360

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 335 PQHAWTNHGQQEPPAQQNPRYFTRNNDQPSPPRSSLA 225
           P    T+  + EP   +N  YF R   QP  PR  +A
Sbjct: 306 PSQGPTDGSRPEPQRPRNRPYFQRRRQQPPGPRQPIA 342


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,608,363
Number of Sequences: 219361
Number of extensions: 816005
Number of successful extensions: 2406
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2402
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top