ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HABP2_BOVIN (Q5E9Z2) Hyaluronan-binding protein 2 precursor (EC ... 30 3.7
2YQJI_SHIFL (P64589) Hypothetical protein yqjI 30 3.7
3YQJI_ECOLI (P64588) Hypothetical protein yqjI 30 3.7

>HABP2_BOVIN (Q5E9Z2) Hyaluronan-binding protein 2 precursor (EC 3.4.21.-)|
           [Contains: Hyaluronan-binding protein 2 50 kDa heavy
           chain; Hyaluronan-binding protein 2 50 kDa heavy chain
           alternate form; Hyaluronan-binding protein 2 27 kDa
           light chain; Hyaluro
          Length = 558

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 24/81 (29%), Positives = 32/81 (39%)
 Frame = +2

Query: 176 FPGSATWRHFSTCKPNPLAKGDSFGSMGSLYSQTRWASQSTAVKETDPSGGKISIGPKSK 355
           + GS   R    C+PNP   G +        S+ R  S+ T        G    IGP   
Sbjct: 140 YRGSDCSRVVPVCRPNPCQNGGTC-------SRQRRRSKFTCACPDQFKGKLCEIGPDDC 192

Query: 356 QIKEDDKDDGLVYQGPISSTI 418
            +     DDG  Y+G +S TI
Sbjct: 193 YV-----DDGYSYRGRVSKTI 208



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>YQJI_SHIFL (P64589) Hypothetical protein yqjI|
          Length = 207

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 14/49 (28%), Positives = 18/49 (36%)
 Frame = -1

Query: 568 CGRGGAEEDHGGCDSSLRDHIHVGRGHERNHRA*RHGEAAGGQGQKLHF 422
           C   G     G C     +H H G GH+  H     G    G G++  F
Sbjct: 9   CKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHGRGGGRRQRF 57



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>YQJI_ECOLI (P64588) Hypothetical protein yqjI|
          Length = 207

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 14/49 (28%), Positives = 18/49 (36%)
 Frame = -1

Query: 568 CGRGGAEEDHGGCDSSLRDHIHVGRGHERNHRA*RHGEAAGGQGQKLHF 422
           C   G     G C     +H H G GH+  H     G    G G++  F
Sbjct: 9   CKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHGRGGGRRQRF 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,626,574
Number of Sequences: 219361
Number of extensions: 1517241
Number of successful extensions: 4244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4242
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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