ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470444.1| Oryza sativa (japonica cultivar-group), mRNA 222 1e-54
2gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome... 222 1e-54
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 222 1e-54
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 222 1e-54
5dbj|AK102872.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 1e-54
6dbj|AK059849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 1e-54
7dbj|AK120043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
8ref|NM_129137.2| Arabidopsis thaliana unknown protein AT2G35790 ... 48 0.032
9gb|AC007017.4| Arabidopsis thaliana chromosome 2 clone F11F19 ma... 48 0.032
10gb|AC006068.4| Arabidopsis thaliana chromosome 2 clone T20F21 ma... 48 0.032
11gb|AY072456.1| Arabidopsis thaliana unknown protein mRNA, comple... 48 0.032
12gb|AY042895.1| Arabidopsis thaliana Unknown protein (At2g35790) ... 48 0.032
13emb|BX821872.1|CNS0AA4I Arabidopsis thaliana Full-length cDNA Co... 46 0.13
14ref|XM_380454.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 44 0.50
15emb|AL670305.7| Mouse DNA sequence from clone RP23-225G17 on chr... 44 0.50
16gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 42 2.0
17gb|AF145785.1|SBVP1S1 Sorghum bicolor genomic sequence similar t... 42 2.0
18gb|AF148558.1|SBISVP1 Sorghum bicolor insertion sequence IS9530 ... 42 2.0
19dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 2.0
20dbj|AP000732.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.0
21gb|AY110818.1| Zea mays CL1869_-1 mRNA sequence 42 2.0
22gb|M60214.1|MZEREGPRO Zea mays viviparous-1 mRNA, complete cds 42 2.0
23emb|AJ001635.1|ZMVP1MCW Zea mays mRNA for viviparous-1 42 2.0
24gb|AC102166.13| Mus musculus chromosome 1, clone RP23-447B15, co... 40 7.8
25ref|XM_519011.1| PREDICTED: Pan troglodytes similar to homeobox ... 40 7.8
26ref|XM_478637.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.8
27ref|XM_477538.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.8
28gb|AC109268.10| Mus musculus chromosome 1, clone RP23-305F24, co... 40 7.8
29gb|AC142497.3| Homo sapiens chromosome X clone RP11-959H17 map p... 40 7.8
30gb|AF235097.2| Homo sapiens chromosome X multiple clones map p11... 40 7.8
31gb|AY462677.1| Plasmodium falciparum erythrocyte membrane protei... 40 7.8
32gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 7.8
33emb|CR962134.2| Medicago truncatula chromosome 5 clone mte1-40n1... 40 7.8
34gb|AC121889.3| Mus musculus BAC clone RP24-146D9 from chromosome... 40 7.8
35emb|BX649339.24| Human DNA sequence from clone CTD-2248C21 on ch... 40 7.8
36gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 7.8
37emb|AL138706.9| Human DNA sequence from clone RP11-421P11 on chr... 40 7.8
38emb|CR847867.6| Human DNA sequence from clone WI2-1744J18 on chr... 40 7.8
39gb|U80256.1|MMU80256 Mus musculus clone ma5 L1 retrotransposon L... 40 7.8
40dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
41gb|AC142495.2| Homo sapiens chromosome X clone LL0XNC01-31A6 map... 40 7.8
42gb|AF055475.1|AF055475 Homo sapiens GAGE-7B gene, complete cds 40 7.8
43dbj|AP005674.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
44dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
45dbj|AP004346.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
46dbj|AK071498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
47dbj|AK067303.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
48dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
49emb|CR761672.1| Xenopus tropicalis finished cDNA, clone TGas061c18 40 7.8
50emb|AL928940.12| Mouse DNA sequence from clone RP23-94J17 on chr... 40 7.8
51emb|AL807379.17| Mouse DNA sequence from clone RP23-378L22 on ch... 40 7.8
52gb|AC158950.3| Mus musculus chromosome 1, clone RP24-215K13, com... 40 7.8 
>ref|XM_470444.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 935

 Score =  222 bits (112), Expect = 1e-54
 Identities = 271/324 (83%)
 Strand = Plus / Plus

                                                                       
Query: 192 catggaggcatttctcaacatgcaagcctaatcctcttgcaaaaggggatagctttggct 251
           |||||| |||||||||||||| |||||||||||||||| |||||   ||| || |||| |
Sbjct: 147 catggaagcatttctcaacattcaagcctaatcctcttccaaaacttgatggccttggtt 206

                                                                       
Query: 252 caatgggttctctgtacagccagacaagatgggcttctcaatccactgctgtcaaagaaa 311
           || |   || | ||||||| ||| ||||||||||||||||| |  ||||||| |||||||
Sbjct: 207 cagtcacttgtttgtacagtcaggcaagatgggcttctcaagctgctgctgttaaagaaa 266

                                                                       
Query: 312 ctgaccccagtggcggcaagataagcattgggcccaaatccaagcagatcaaggaggacg 371
           ||||    |||||| ||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 267 ctgaaaatagtggcagcaagataagcattgggccaaaatccaagcagatcaaggaagatg 326

                                                                       
Query: 372 acaaggatgatggactggtttatcaaggaccaatatcatcaaccatcaagaaagtgaagc 431
           |||| |||||  | || ||||| || ||||| |||||||| ||||| |  ||||||||||
Sbjct: 327 acaaagatgacaggctagtttaccagggacctatatcatcgaccataagaaaagtgaagc 386

                                                                       
Query: 432 ttctgtccctgtccacctgctgcctctccgtgtcgctaggccctgtgattacgttcatga 491
           |||| || |||||||||||||| ||||| |||||||| ||||||||||| || |||||||
Sbjct: 387 ttctttctctgtccacctgctgtctctctgtgtcgcttggccctgtgataacattcatga 446

                                   
Query: 492 cctcgcccgacatgaatgtgatcc 515
           | || || || |||||||| ||||
Sbjct: 447 catccccagatatgaatgtaatcc 470



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 66/77 (85%), Gaps = 6/77 (7%)
 Strand = Plus / Plus

                                                                       
Query: 54  ccatggcgacggcgaggctgcgatccgcgtcggcgtcctccctccgcgggatcctcctcc 113
           ||||||||||||||||||| |||||||| ||      ||||||||||||| |||||||||
Sbjct: 15  ccatggcgacggcgaggctccgatccgcctc------ctccctccgcggggtcctcctcc 68

                            
Query: 114 gccgctgctccgcggga 130
           ||| |||||||| ||||
Sbjct: 69  gccactgctccgtggga 85
to top
>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08
             map S15179S, complete sequence
          Length = 166005

 Score =  222 bits (112), Expect = 1e-54
 Identities = 271/324 (83%)
 Strand = Plus / Plus

                                                                         
Query: 192   catggaggcatttctcaacatgcaagcctaatcctcttgcaaaaggggatagctttggct 251
             |||||| |||||||||||||| |||||||||||||||| |||||   ||| || |||| |
Sbjct: 63374 catggaagcatttctcaacattcaagcctaatcctcttccaaaacttgatggccttggtt 63433

                                                                         
Query: 252   caatgggttctctgtacagccagacaagatgggcttctcaatccactgctgtcaaagaaa 311
             || |   || | ||||||| ||| ||||||||||||||||| |  ||||||| |||||||
Sbjct: 63434 cagtcacttgtttgtacagtcaggcaagatgggcttctcaagctgctgctgttaaagaaa 63493

                                                                         
Query: 312   ctgaccccagtggcggcaagataagcattgggcccaaatccaagcagatcaaggaggacg 371
             ||||    |||||| ||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 63494 ctgaaaatagtggcagcaagataagcattgggccaaaatccaagcagatcaaggaagatg 63553

                                                                         
Query: 372   acaaggatgatggactggtttatcaaggaccaatatcatcaaccatcaagaaagtgaagc 431
             |||| |||||  | || ||||| || ||||| |||||||| ||||| |  ||||||||||
Sbjct: 63554 acaaagatgacaggctagtttaccagggacctatatcatcgaccataagaaaagtgaagc 63613

                                                                         
Query: 432   ttctgtccctgtccacctgctgcctctccgtgtcgctaggccctgtgattacgttcatga 491
             |||| || |||||||||||||| ||||| |||||||| ||||||||||| || |||||||
Sbjct: 63614 ttctttctctgtccacctgctgtctctctgtgtcgcttggccctgtgataacattcatga 63673

                                     
Query: 492   cctcgcccgacatgaatgtgatcc 515
             | || || || |||||||| ||||
Sbjct: 63674 catccccagatatgaatgtaatcc 63697



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 66/77 (85%), Gaps = 6/77 (7%)
 Strand = Plus / Plus

                                                                         
Query: 54    ccatggcgacggcgaggctgcgatccgcgtcggcgtcctccctccgcgggatcctcctcc 113
             ||||||||||||||||||| |||||||| ||      ||||||||||||| |||||||||
Sbjct: 62462 ccatggcgacggcgaggctccgatccgcctc------ctccctccgcggggtcctcctcc 62515

                              
Query: 114   gccgctgctccgcggga 130
             ||| |||||||| ||||
Sbjct: 62516 gccactgctccgtggga 62532
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  222 bits (112), Expect = 1e-54
 Identities = 271/324 (83%)
 Strand = Plus / Plus

                                                                            
Query: 192      catggaggcatttctcaacatgcaagcctaatcctcttgcaaaaggggatagctttggct 251
                |||||| |||||||||||||| |||||||||||||||| |||||   ||| || |||| |
Sbjct: 35665596 catggaagcatttctcaacattcaagcctaatcctcttccaaaacttgatggccttggtt 35665655

                                                                            
Query: 252      caatgggttctctgtacagccagacaagatgggcttctcaatccactgctgtcaaagaaa 311
                || |   || | ||||||| ||| ||||||||||||||||| |  ||||||| |||||||
Sbjct: 35665656 cagtcacttgtttgtacagtcaggcaagatgggcttctcaagctgctgctgttaaagaaa 35665715

                                                                            
Query: 312      ctgaccccagtggcggcaagataagcattgggcccaaatccaagcagatcaaggaggacg 371
                ||||    |||||| ||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 35665716 ctgaaaatagtggcagcaagataagcattgggccaaaatccaagcagatcaaggaagatg 35665775

                                                                            
Query: 372      acaaggatgatggactggtttatcaaggaccaatatcatcaaccatcaagaaagtgaagc 431
                |||| |||||  | || ||||| || ||||| |||||||| ||||| |  ||||||||||
Sbjct: 35665776 acaaagatgacaggctagtttaccagggacctatatcatcgaccataagaaaagtgaagc 35665835

                                                                            
Query: 432      ttctgtccctgtccacctgctgcctctccgtgtcgctaggccctgtgattacgttcatga 491
                |||| || |||||||||||||| ||||| |||||||| ||||||||||| || |||||||
Sbjct: 35665836 ttctttctctgtccacctgctgtctctctgtgtcgcttggccctgtgataacattcatga 35665895

                                        
Query: 492      cctcgcccgacatgaatgtgatcc 515
                | || || || |||||||| ||||
Sbjct: 35665896 catccccagatatgaatgtaatcc 35665919



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 66/77 (85%), Gaps = 6/77 (7%)
 Strand = Plus / Plus

                                                                            
Query: 54       ccatggcgacggcgaggctgcgatccgcgtcggcgtcctccctccgcgggatcctcctcc 113
                ||||||||||||||||||| |||||||| ||      ||||||||||||| |||||||||
Sbjct: 35664684 ccatggcgacggcgaggctccgatccgcctc------ctccctccgcggggtcctcctcc 35664737

                                 
Query: 114      gccgctgctccgcggga 130
                ||| |||||||| ||||
Sbjct: 35664738 gccactgctccgtggga 35664754
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  222 bits (112), Expect = 1e-54
 Identities = 271/324 (83%)
 Strand = Plus / Plus

                                                                            
Query: 192      catggaggcatttctcaacatgcaagcctaatcctcttgcaaaaggggatagctttggct 251
                |||||| |||||||||||||| |||||||||||||||| |||||   ||| || |||| |
Sbjct: 35755669 catggaagcatttctcaacattcaagcctaatcctcttccaaaacttgatggccttggtt 35755728

                                                                            
Query: 252      caatgggttctctgtacagccagacaagatgggcttctcaatccactgctgtcaaagaaa 311
                || |   || | ||||||| ||| ||||||||||||||||| |  ||||||| |||||||
Sbjct: 35755729 cagtcacttgtttgtacagtcaggcaagatgggcttctcaagctgctgctgttaaagaaa 35755788

                                                                            
Query: 312      ctgaccccagtggcggcaagataagcattgggcccaaatccaagcagatcaaggaggacg 371
                ||||    |||||| ||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 35755789 ctgaaaatagtggcagcaagataagcattgggccaaaatccaagcagatcaaggaagatg 35755848

                                                                            
Query: 372      acaaggatgatggactggtttatcaaggaccaatatcatcaaccatcaagaaagtgaagc 431
                |||| |||||  | || ||||| || ||||| |||||||| ||||| |  ||||||||||
Sbjct: 35755849 acaaagatgacaggctagtttaccagggacctatatcatcgaccataagaaaagtgaagc 35755908

                                                                            
Query: 432      ttctgtccctgtccacctgctgcctctccgtgtcgctaggccctgtgattacgttcatga 491
                |||| || |||||||||||||| ||||| |||||||| ||||||||||| || |||||||
Sbjct: 35755909 ttctttctctgtccacctgctgtctctctgtgtcgcttggccctgtgataacattcatga 35755968

                                        
Query: 492      cctcgcccgacatgaatgtgatcc 515
                | || || || |||||||| ||||
Sbjct: 35755969 catccccagatatgaatgtaatcc 35755992



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 66/77 (85%), Gaps = 6/77 (7%)
 Strand = Plus / Plus

                                                                            
Query: 54       ccatggcgacggcgaggctgcgatccgcgtcggcgtcctccctccgcgggatcctcctcc 113
                ||||||||||||||||||| |||||||| ||      ||||||||||||| |||||||||
Sbjct: 35754757 ccatggcgacggcgaggctccgatccgcctc------ctccctccgcggggtcctcctcc 35754810

                                 
Query: 114      gccgctgctccgcggga 130
                ||| |||||||| ||||
Sbjct: 35754811 gccactgctccgtggga 35754827
to top
>dbj|AK102872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112B07, full
           insert sequence
          Length = 1151

 Score =  222 bits (112), Expect = 1e-54
 Identities = 271/324 (83%)
 Strand = Plus / Plus

                                                                       
Query: 192 catggaggcatttctcaacatgcaagcctaatcctcttgcaaaaggggatagctttggct 251
           |||||| |||||||||||||| |||||||||||||||| |||||   ||| || |||| |
Sbjct: 165 catggaagcatttctcaacattcaagcctaatcctcttccaaaacttgatggccttggtt 224

                                                                       
Query: 252 caatgggttctctgtacagccagacaagatgggcttctcaatccactgctgtcaaagaaa 311
           || |   || | ||||||| ||| ||||||||||||||||| |  ||||||| |||||||
Sbjct: 225 cagtcacttgtttgtacagtcaggcaagatgggcttctcaagctgctgctgttaaagaaa 284

                                                                       
Query: 312 ctgaccccagtggcggcaagataagcattgggcccaaatccaagcagatcaaggaggacg 371
           ||||    |||||| ||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 285 ctgaaaatagtggcagcaagataagcattgggccaaaatccaagcagatcaaggaagatg 344

                                                                       
Query: 372 acaaggatgatggactggtttatcaaggaccaatatcatcaaccatcaagaaagtgaagc 431
           |||| |||||  | || ||||| || ||||| |||||||| ||||| |  ||||||||||
Sbjct: 345 acaaagatgacaggctagtttaccagggacctatatcatcgaccataagaaaagtgaagc 404

                                                                       
Query: 432 ttctgtccctgtccacctgctgcctctccgtgtcgctaggccctgtgattacgttcatga 491
           |||| || |||||||||||||| ||||| |||||||| ||||||||||| || |||||||
Sbjct: 405 ttctttctctgtccacctgctgtctctctgtgtcgcttggccctgtgataacattcatga 464

                                   
Query: 492 cctcgcccgacatgaatgtgatcc 515
           | || || || |||||||| ||||
Sbjct: 465 catccccagatatgaatgtaatcc 488



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 66/77 (85%), Gaps = 6/77 (7%)
 Strand = Plus / Plus

                                                                       
Query: 54  ccatggcgacggcgaggctgcgatccgcgtcggcgtcctccctccgcgggatcctcctcc 113
           ||||||||||||||||||| |||||||| ||      ||||||||||||| |||||||||
Sbjct: 33  ccatggcgacggcgaggctccgatccgcctc------ctccctccgcggggtcctcctcc 86

                            
Query: 114 gccgctgctccgcggga 130
           ||| |||||||| ||||
Sbjct: 87  gccactgctccgtggga 103
to top
>dbj|AK059849.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-F12, full
           insert sequence
          Length = 1123

 Score =  222 bits (112), Expect = 1e-54
 Identities = 271/324 (83%)
 Strand = Plus / Plus

                                                                       
Query: 192 catggaggcatttctcaacatgcaagcctaatcctcttgcaaaaggggatagctttggct 251
           |||||| |||||||||||||| |||||||||||||||| |||||   ||| || |||| |
Sbjct: 164 catggaagcatttctcaacattcaagcctaatcctcttccaaaacttgatggccttggtt 223

                                                                       
Query: 252 caatgggttctctgtacagccagacaagatgggcttctcaatccactgctgtcaaagaaa 311
           || |   || | ||||||| ||| ||||||||||||||||| |  ||||||| |||||||
Sbjct: 224 cagtcacttgtttgtacagtcaggcaagatgggcttctcaagctgctgctgttaaagaaa 283

                                                                       
Query: 312 ctgaccccagtggcggcaagataagcattgggcccaaatccaagcagatcaaggaggacg 371
           ||||    |||||| ||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 284 ctgaaaatagtggcagcaagataagcattgggccaaaatccaagcagatcaaggaagatg 343

                                                                       
Query: 372 acaaggatgatggactggtttatcaaggaccaatatcatcaaccatcaagaaagtgaagc 431
           |||| |||||  | || ||||| || ||||| |||||||| ||||| |  ||||||||||
Sbjct: 344 acaaagatgacaggctagtttaccagggacctatatcatcgaccataagaaaagtgaagc 403

                                                                       
Query: 432 ttctgtccctgtccacctgctgcctctccgtgtcgctaggccctgtgattacgttcatga 491
           |||| || |||||||||||||| ||||| |||||||| ||||||||||| || |||||||
Sbjct: 404 ttctttctctgtccacctgctgtctctctgtgtcgcttggccctgtgataacattcatga 463

                                   
Query: 492 cctcgcccgacatgaatgtgatcc 515
           | || || || |||||||| ||||
Sbjct: 464 catccccagatatgaatgtaatcc 487



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 66/77 (85%), Gaps = 6/77 (7%)
 Strand = Plus / Plus

                                                                       
Query: 54  ccatggcgacggcgaggctgcgatccgcgtcggcgtcctccctccgcgggatcctcctcc 113
           ||||||||||||||||||| |||||||| ||      ||||||||||||| |||||||||
Sbjct: 32  ccatggcgacggcgaggctccgatccgcctc------ctccctccgcggggtcctcctcc 85

                            
Query: 114 gccgctgctccgcggga 130
           ||| |||||||| ||||
Sbjct: 86  gccactgctccgtggga 102
to top
>dbj|AK120043.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-F05, full
           insert sequence
          Length = 1079

 Score =  129 bits (65), Expect = 1e-26
 Identities = 143/169 (84%)
 Strand = Plus / Plus

                                                                       
Query: 347 aaatccaagcagatcaaggaggacgacaaggatgatggactggtttatcaaggaccaata 406
           |||||||||||||||||||| || ||||| |||||  | || ||||| || ||||| |||
Sbjct: 205 aaatccaagcagatcaaggaagatgacaaagatgacaggctagtttaccagggacctata 264

                                                                       
Query: 407 tcatcaaccatcaagaaagtgaagcttctgtccctgtccacctgctgcctctccgtgtcg 466
           ||||| ||||| |  |||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 265 tcatcgaccataagaaaagtgaagcttctttctctgtccacctgctgtctctctgtgtcg 324

                                                            
Query: 467 ctaggccctgtgattacgttcatgacctcgcccgacatgaatgtgatcc 515
           || ||||||||||| || |||||||| || || || |||||||| ||||
Sbjct: 325 cttggccctgtgataacattcatgacatccccagatatgaatgtaatcc 373



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 66/77 (85%), Gaps = 6/77 (7%)
 Strand = Plus / Plus

                                                                       
Query: 54  ccatggcgacggcgaggctgcgatccgcgtcggcgtcctccctccgcgggatcctcctcc 113
           ||||||||||||||||||| |||||||| ||      ||||||||||||| |||||||||
Sbjct: 32  ccatggcgacggcgaggctccgatccgcctc------ctccctccgcggggtcctcctcc 85

                            
Query: 114 gccgctgctccgcggga 130
           ||| |||||||| ||||
Sbjct: 86  gccactgctccgtggga 102



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 192 catggaggcatttctcaacatgcaagcctaatcctcttgcaaaa 235
           |||||| |||||||||||||| |||||||||||||||| |||||
Sbjct: 164 catggaagcatttctcaacattcaagcctaatcctcttccaaaa 207
to top
>ref|NM_129137.2| Arabidopsis thaliana unknown protein AT2G35790 mRNA, complete cds
          Length = 919

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 398 ggaccaatatcatcaaccatcaagaaagtgaa 429
           |||||||| ||||||||||| |||||||||||
Sbjct: 324 ggaccaatctcatcaaccataaagaaagtgaa 355
to top
>gb|AC007017.4| Arabidopsis thaliana chromosome 2 clone F11F19 map g6825, complete
              sequence
          Length = 120938

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 398    ggaccaatatcatcaaccatcaagaaagtgaa 429
              |||||||| ||||||||||| |||||||||||
Sbjct: 115501 ggaccaatctcatcaaccataaagaaagtgaa 115470
to top
>gb|AC006068.4| Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete
            sequence
          Length = 107436

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 398  ggaccaatatcatcaaccatcaagaaagtgaa 429
            |||||||| ||||||||||| |||||||||||
Sbjct: 2610 ggaccaatctcatcaaccataaagaaagtgaa 2579
to top
>gb|AY072456.1| Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 820

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 398 ggaccaatatcatcaaccatcaagaaagtgaa 429
           |||||||| ||||||||||| |||||||||||
Sbjct: 268 ggaccaatctcatcaaccataaagaaagtgaa 299
to top
>gb|AY042895.1| Arabidopsis thaliana Unknown protein (At2g35790) mRNA, complete cds
          Length = 920

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 398 ggaccaatatcatcaaccatcaagaaagtgaa 429
           |||||||| ||||||||||| |||||||||||
Sbjct: 324 ggaccaatctcatcaaccataaagaaagtgaa 355
to top
>emb|BX821872.1|CNS0AA4I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL80ZF03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 857

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 398 ggaccaatatcatcaaccatcaagaaagtga 428
           |||||||| ||||||||||| ||||||||||
Sbjct: 260 ggaccaatctcatcaaccataaagaaagtga 290
to top
>ref|XM_380454.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00278.1)
           partial mRNA
          Length = 1311

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 7   ctccttggcctgctccgcgtcg 28
           ||||||||||||||||||||||
Sbjct: 744 ctccttggcctgctccgcgtcg 723
to top
>emb|AL670305.7| Mouse DNA sequence from clone RP23-225G17 on chromosome X, complete
              sequence
          Length = 172171

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 395    caaggaccaatatcatcaaccatcaagaaa 424
              |||||| ||||||||| |||||||||||||
Sbjct: 169354 caaggatcaatatcattaaccatcaagaaa 169325
to top
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 224     cctcttgcaaaaggggatagc 244
               |||||||||||||||||||||
Sbjct: 2130783 cctcttgcaaaaggggatagc 2130803
to top
>gb|AF145785.1|SBVP1S1 Sorghum bicolor genomic sequence similar to vp1 maize gene
          Length = 734

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 95  ctccgcgggatcctcctccgccgct 119
           ||||||||||||| |||||||||||
Sbjct: 534 ctccgcgggatccgcctccgccgct 558
to top
>gb|AF148558.1|SBISVP1 Sorghum bicolor insertion sequence IS9530 ISVP1 (ISvp1) gene
           sequence
          Length = 737

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 95  ctccgcgggatcctcctccgccgct 119
           ||||||||||||| |||||||||||
Sbjct: 535 ctccgcgggatccgcctccgccgct 559
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 484     gttcatgacctcgcccgacat 504
               |||||||||||||||||||||
Sbjct: 2618924 gttcatgacctcgcccgacat 2618904
to top
>dbj|AP000732.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F21A17
          Length = 64714

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 225  ctcttgcaaaaggggatagct 245
            |||||||||||||||||||||
Sbjct: 1388 ctcttgcaaaaggggatagct 1408
to top
>gb|AY110818.1| Zea mays CL1869_-1 mRNA sequence
          Length = 2456

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 95  ctccgcgggatcctcctccgccgct 119
           ||||||||||||| |||||||||||
Sbjct: 634 ctccgcgggatccgcctccgccgct 658
to top
>gb|M60214.1|MZEREGPRO Zea mays viviparous-1 mRNA, complete cds
          Length = 2456

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 95  ctccgcgggatcctcctccgccgct 119
           ||||||||||||| |||||||||||
Sbjct: 634 ctccgcgggatccgcctccgccgct 658
to top
>emb|AJ001635.1|ZMVP1MCW Zea mays mRNA for viviparous-1
          Length = 1538

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 95  ctccgcgggatcctcctccgccgct 119
           ||||||||||||| |||||||||||
Sbjct: 258 ctccgcgggatccgcctccgccgct 282
to top
>gb|AC102166.13| Mus musculus chromosome 1, clone RP23-447B15, complete sequence
          Length = 182043

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 343   gcccaaatccaagcagatcaagga 366
             |||||| |||||||||||||||||
Sbjct: 84938 gcccaagtccaagcagatcaagga 84961
to top
>ref|XM_519011.1| PREDICTED: Pan troglodytes similar to homeobox protein A7; homeobox
           protein HOX-1A (LOC463310), mRNA
          Length = 3852

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 120 gctccgcgggacccgcagccgcatccgc 147
           |||||||||| ||||||||||| |||||
Sbjct: 137 gctccgcggggcccgcagccgcctccgc 110
to top
>ref|XM_478637.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 688

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 106 cctcctccgccgctgctccgcggg 129
           |||||||||||||| |||||||||
Sbjct: 211 cctcctccgccgcttctccgcggg 188
to top
>ref|XM_477538.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1067

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  gcgtcggcgtcctccctccg 99
           ||||||||||||||||||||
Sbjct: 457 gcgtcggcgtcctccctccg 438
to top
>gb|AC109268.10| Mus musculus chromosome 1, clone RP23-305F24, complete sequence
          Length = 160975

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    gggcccaaatccaagcagat 360
              ||||||||||||||||||||
Sbjct: 104139 gggcccaaatccaagcagat 104120
to top
>gb|AC142497.3| Homo sapiens chromosome X clone RP11-959H17 map p11.23, complete
             sequence
          Length = 147127

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 71338 cactccccacgaaaacccta 71319



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 61814 cactccccacgaaaacccta 61795



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 52267 cactccccacgaaaacccta 52248



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 42718 cactccccacgaaaacccta 42699



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 33160 cactccccacgaaaacccta 33141



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 23607 cactccccacgaaaacccta 23588



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 14051 cactccccacgaaaacccta 14032



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   cactccccacgaaaacccta 49
            ||||||||||||||||||||
Sbjct: 4495 cactccccacgaaaacccta 4476
to top
>gb|AF235097.2| Homo sapiens chromosome X multiple clones map p11.23, complete sequence
          Length = 140335

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     cactccccacgaaaacccta 49
              ||||||||||||||||||||
Sbjct: 139271 cactccccacgaaaacccta 139252



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     cactccccacgaaaacccta 49
              ||||||||||||||||||||
Sbjct: 129728 cactccccacgaaaacccta 129709
to top
>gb|AY462677.1| Plasmodium falciparum erythrocyte membrane protein 1 (var) mRNA,
           partial cds, NTS-DBL1alpha region
          Length = 560

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 542 atcttcctcagcgccaccacgacc 565
           |||||||||| |||||||||||||
Sbjct: 30  atcttcctcaccgccaccacgacc 7
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 548     ctcagcgccaccacgaccgc 567
               ||||||||||||||||||||
Sbjct: 3163878 ctcagcgccaccacgaccgc 3163859
to top
>emb|CR962134.2| Medicago truncatula chromosome 5 clone mte1-40n1, COMPLETE SEQUENCE
          Length = 139651

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   caaggaccaatatcatcaac 414
             ||||||||||||||||||||
Sbjct: 70119 caaggaccaatatcatcaac 70100
to top
>gb|AC121889.3| Mus musculus BAC clone RP24-146D9 from chromosome 1, complete
            sequence
          Length = 160207

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 341  gggcccaaatccaagcagat 360
            ||||||||||||||||||||
Sbjct: 8095 gggcccaaatccaagcagat 8076
to top
>emb|BX649339.24| Human DNA sequence from clone CTD-2248C21 on chromosome X, complete
             sequence
          Length = 88240

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 81631 cactccccacgaaaacccta 81612



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 72094 cactccccacgaaaacccta 72075



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 62571 cactccccacgaaaacccta 62552



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 53072 cactccccacgaaaacccta 53053



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 43519 cactccccacgaaaacccta 43500



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 34019 cactccccacgaaaacccta 34000



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    cactccccacgaaaacccta 49
             ||||||||||||||||||||
Sbjct: 24480 cactccccacgaaaacccta 24461
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 484     gttcatgacctcgcccgacatgaa 507
               |||||||||| |||||||||||||
Sbjct: 3279926 gttcatgaccacgcccgacatgaa 3279903
to top
>emb|AL138706.9| Human DNA sequence from clone RP11-421P11 on chromosome 13 Contains the
              MADH9 gene for MAD (mothers against decapentaplegic homolog
              9 (Drosophila), the gene for dolichyl-phosphate
              beta-glucosyltransferase (ALG5), the gene for
              Opa-interacting protein 2 (OIP2), the 3' end of the gene
              for transcription factor (p38 interacting protein)
              (P38IP)part of as novel gene, a RPL29 pseudogene, a
              MAP2K1IP1 pseudogene and a CpG island, complete sequence
          Length = 195032

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    tctcagattttcagtttcct 181
              ||||||||||||||||||||
Sbjct: 137663 tctcagattttcagtttcct 137644
to top
>emb|CR847867.6| Human DNA sequence from clone WI2-1744J18 on chromosome 1, complete
             sequence
          Length = 23685

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   catttctcaacatgcaagcc 219
             ||||||||||||||||||||
Sbjct: 15954 catttctcaacatgcaagcc 15973
to top
>gb|U80256.1|MMU80256 Mus musculus clone ma5 L1 retrotransposon LINE1 repeat region
          Length = 206

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 31  actccccacgaaaaccctaa 50
           ||||||||||||||||||||
Sbjct: 195 actccccacgaaaaccctaa 176
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 106      cctcctccgccgctgctccgcggg 129
                |||||||||||||| |||||||||
Sbjct: 21582818 cctcctccgccgcttctccgcggg 21582841



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 80       gcgtcggcgtcctccctccg 99
                ||||||||||||||||||||
Sbjct: 11301541 gcgtcggcgtcctccctccg 11301522
to top
>gb|AC142495.2| Homo sapiens chromosome X clone LL0XNC01-31A6 map Xp11.23, complete
            sequence
          Length = 41905

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   cactccccacgaaaacccta 49
            ||||||||||||||||||||
Sbjct: 3978 cactccccacgaaaacccta 3959
to top
>gb|AF055475.1|AF055475 Homo sapiens GAGE-7B gene, complete cds
          Length = 9531

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   cactccccacgaaaacccta 49
            ||||||||||||||||||||
Sbjct: 1783 cactccccacgaaaacccta 1764
to top
>dbj|AP005674.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1126F07
          Length = 125007

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     gcgtcggcgtcctccctccg 99
              ||||||||||||||||||||
Sbjct: 115519 gcgtcggcgtcctccctccg 115500
to top
>dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0006G05
          Length = 56865

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   cctcctccgccgctgctccgcggg 129
             |||||||||||||| |||||||||
Sbjct: 29192 cctcctccgccgcttctccgcggg 29215
to top
>dbj|AP004346.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0656C04
          Length = 143411

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 80   gcgtcggcgtcctccctccg 99
            ||||||||||||||||||||
Sbjct: 2052 gcgtcggcgtcctccctccg 2033
to top
>dbj|AK071498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099F08, full
           insert sequence
          Length = 1068

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  gcgtcggcgtcctccctccg 99
           ||||||||||||||||||||
Sbjct: 457 gcgtcggcgtcctccctccg 438
to top
>dbj|AK067303.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102C16, full
           insert sequence
          Length = 689

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 106 cctcctccgccgctgctccgcggg 129
           |||||||||||||| |||||||||
Sbjct: 212 cctcctccgccgcttctccgcggg 189
to top
>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1612_A04
          Length = 124833

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   cctcctccgccgctgctccgcggg 129
             |||||||||||||| |||||||||
Sbjct: 13274 cctcctccgccgcttctccgcggg 13297
to top
>emb|CR761672.1| Xenopus tropicalis finished cDNA, clone TGas061c18
          Length = 1506

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 448 ctgctgcctctccgtgtcgc 467
           ||||||||||||||||||||
Sbjct: 88  ctgctgcctctccgtgtcgc 69
to top
>emb|AL928940.12| Mouse DNA sequence from clone RP23-94J17 on chromosome 2, complete
             sequence
          Length = 115994

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   acagccagacaagatgggct 286
             ||||||||||||||||||||
Sbjct: 24094 acagccagacaagatgggct 24113
to top
>emb|AL807379.17| Mouse DNA sequence from clone RP23-378L22 on chromosome 4, complete
              sequence
          Length = 186519

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 89     tcctccctccgcgggatcctcctccgcc 116
              |||||||||||| || ||||||||||||
Sbjct: 137799 tcctccctccgccggctcctcctccgcc 137826
to top
>gb|AC158950.3| Mus musculus chromosome 1, clone RP24-215K13, complete sequence
          Length = 208060

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 343   gcccaaatccaagcagatcaagga 366
             |||||| |||||||||||||||||
Sbjct: 68697 gcccaagtccaagcagatcaagga 68674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,788,919
Number of Sequences: 3902068
Number of extensions: 4788919
Number of successful extensions: 122674
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122216
Number of HSP's gapped (non-prelim): 452
length of query: 574
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 551
effective length of database: 17,143,297,704
effective search space: 9445957034904
effective search space used: 9445957034904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top