ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart44b03 |
|---|---|
| Clone Library Name | barley_pub |
>PFTB_ARATH (Q38920) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) (Enhanced response to abscisic acid 1) Length = 404 Score = 92.4 bits (228), Expect = 8e-19 Identities = 42/88 (47%), Positives = 51/88 (57%) Frame = +3 Query: 294 LELWRDQHVEYLTKGLRHLAPSFHVLDANRPWLCYWMVHGXXXXXXXXXXXXXXXIVDFL 473 +E+ RD+ ++YL KGLR L P F LDANRPWLCYW++H +DFL Sbjct: 1 MEIQRDKQLDYLMKGLRQLGPQFSSLDANRPWLCYWILHSIALLGETVDDELESNAIDFL 60 Query: 474 SRCQDKHXXXXXXXXQLPHLATSYAAVN 557 RCQ QLPHLAT+YAAVN Sbjct: 61 GRCQGSEGGYGGGPGQLPHLATTYAAVN 88
>PFTB_HUMAN (P49356) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 437 Score = 84.3 bits (207), Expect = 2e-16 Identities = 44/120 (36%), Positives = 60/120 (50%) Frame = +3 Query: 198 TVTQVEQMKVEARVADIYRVLFDAAPNAKSAVLELWRDQHVEYLTKGLRHLAPSFHVLDA 377 TVT +EQ KVE ++ +++ N L L R++H YL +GLR L ++ LDA Sbjct: 42 TVTSIEQAKVEEKIQEVFS---SYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDA 98 Query: 378 NRPWLCYWMVHGXXXXXXXXXXXXXXXIVDFLSRCQDKHXXXXXXXXQLPHLATSYAAVN 557 +RPWLCYW++H + FL CQ Q PHLA +YAAVN Sbjct: 99 SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVN 158
>PFTB_BOVIN (P49355) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 437 Score = 84.3 bits (207), Expect = 2e-16 Identities = 44/120 (36%), Positives = 60/120 (50%) Frame = +3 Query: 198 TVTQVEQMKVEARVADIYRVLFDAAPNAKSAVLELWRDQHVEYLTKGLRHLAPSFHVLDA 377 TVT +EQ KVE ++ +++ N L L R++H YL +GLR L ++ LDA Sbjct: 42 TVTSIEQAKVEEKIQEVFS---SYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDA 98 Query: 378 NRPWLCYWMVHGXXXXXXXXXXXXXXXIVDFLSRCQDKHXXXXXXXXQLPHLATSYAAVN 557 +RPWLCYW++H + FL CQ Q PHLA +YAAVN Sbjct: 99 SRPWLCYWILHSLELLDEPIPQMVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVN 158
>PFTB_RAT (Q02293) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 437 Score = 84.0 bits (206), Expect = 3e-16 Identities = 44/120 (36%), Positives = 60/120 (50%) Frame = +3 Query: 198 TVTQVEQMKVEARVADIYRVLFDAAPNAKSAVLELWRDQHVEYLTKGLRHLAPSFHVLDA 377 TVT +EQ KVE ++ +++ N L L R++H YL +GLR L ++ LDA Sbjct: 42 TVTSIEQAKVEEKIQEVFS---SYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDA 98 Query: 378 NRPWLCYWMVHGXXXXXXXXXXXXXXXIVDFLSRCQDKHXXXXXXXXQLPHLATSYAAVN 557 +RPWLCYW++H + FL CQ Q PHLA +YAAVN Sbjct: 99 SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVN 158
>PFTB_MOUSE (Q8K2I1) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 437 Score = 83.6 bits (205), Expect = 3e-16 Identities = 44/120 (36%), Positives = 60/120 (50%) Frame = +3 Query: 198 TVTQVEQMKVEARVADIYRVLFDAAPNAKSAVLELWRDQHVEYLTKGLRHLAPSFHVLDA 377 TVT +EQ KVE ++ +++ N L L R++H YL +GLR L ++ LDA Sbjct: 42 TVTSIEQAKVEEKIQEVFS---SYKFNHLVPRLILQREKHFHYLKRGLRQLTDAYECLDA 98 Query: 378 NRPWLCYWMVHGXXXXXXXXXXXXXXXIVDFLSRCQDKHXXXXXXXXQLPHLATSYAAVN 557 +RPWLCYW++H + FL CQ Q PHLA +YAAVN Sbjct: 99 SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVN 158
>PFTB_PEA (Q04903) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 419 Score = 78.2 bits (191), Expect = 1e-14 Identities = 45/131 (34%), Positives = 61/131 (46%) Frame = +3 Query: 165 EDESAAELPRLTVTQVEQMKVEARVADIYRVLFDAAPNAKSAVLELWRDQHVEYLTKGLR 344 E +AAE P TV+Q +Q VE++V IY++ + PNA+S + Sbjct: 2 EASTAAETPTPTVSQRDQWIVESQVFHIYQLFANIPPNAQSII----------------- 44 Query: 345 HLAPSFHVLDANRPWLCYWMVHGXXXXXXXXXXXXXXXIVDFLSRCQDKHXXXXXXXXQL 524 RPWLCYW++H VDFL+RCQD + Q+ Sbjct: 45 ------------RPWLCYWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQM 92 Query: 525 PHLATSYAAVN 557 PHLAT+YAAVN Sbjct: 93 PHLATTYAAVN 103
>RAM1_YEAST (P22007) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 431 Score = 43.1 bits (100), Expect = 5e-04 Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 2/132 (1%) Frame = +3 Query: 168 DESAAELPRLTVTQVEQMKVEARVADIYRVLFDAAPNAKSAVLELWRDQHVEYLTKGLR- 344 D S A P + + + + +V ++D N + A L ++ H YL Sbjct: 37 DSSKAIQPLMKELETDTTEARYKVLQSVLEIYDDEKNIEPA---LTKEFHKMYLDVAFEI 93 Query: 345 HLAPSFHVLDANRPWLCYWMVHGXXXXXXX-XXXXXXXXIVDFLSRCQDKHXXXXXXXXQ 521 L P LDA++PW+ YW+ + IVD L Q Sbjct: 94 SLPPQMTALDASQPWMLYWIANSLKVMDRDWLSDDTKRKIVDKLFTISPSGGPFGGGPGQ 153 Query: 522 LPHLATSYAAVN 557 L HLA++YAA+N Sbjct: 154 LSHLASTYAAIN 165
>PFTB_SCHPO (O13782) Protein farnesyltransferase beta subunit (EC 2.5.1.58)| (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase) (FTase-beta) Length = 382 Score = 38.5 bits (88), Expect = 0.013 Identities = 25/72 (34%), Positives = 35/72 (48%) Frame = +3 Query: 186 LPRLTVTQVEQMKVEARVADIYRVLFDAAPNAKSAVLELWRDQHVEYLTKGLRHLAPSFH 365 + L+ TQV Q + V + N +S L +H++YLTK L L F Sbjct: 1 MDELSETQVMQNETATAVLPLL--------NGESQSFNL--QKHLKYLTKMLDPLPSPFT 50 Query: 366 VLDANRPWLCYW 401 VLDA+R W+ YW Sbjct: 51 VLDASRAWMVYW 62
>OPA_DROME (P39768) Pair-rule protein odd-paired| Length = 609 Score = 33.9 bits (76), Expect = 0.32 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 4/42 (9%) Frame = -1 Query: 510 HHHIHH----VCPGIETRSPQYRSRGHRQAFHPAMQAHEPSN 397 HHH HH PG S H +HPA Q H PS+ Sbjct: 530 HHHPHHHQAAPSPGAAAASASMLHHNHHLLYHPAAQHHPPSD 571
>GAL11_KLULA (P32257) Transcription regulatory protein GAL11| Length = 1034 Score = 33.5 bits (75), Expect = 0.41 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 129 QPQPPPAGGDPSEDESAAELPRLTVTQVEQMKVEARVADIYRVLFDAAPN 278 Q QP P P + + P+LT+ Q +Q+ E +V +I R L PN Sbjct: 159 QQQPMPQQPQPQQQQPNMMRPQLTLQQQQQLANELKVTEIPRELLQKIPN 208
>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)| (IAB-7) (PH189) Length = 493 Score = 31.2 bits (69), Expect = 2.1 Identities = 22/80 (27%), Positives = 33/80 (41%) Frame = -1 Query: 552 QQHTM*RDEVTAQVHHHIHHVCPGIETRSPQYRSRGHRQAFHPAMQAHEPSNSITKVGWH 373 QQH + + Q+HHH HH P P + + H A HP +Q + V Sbjct: 18 QQHLQEQQQHLQQLHHHAHHHLP-----QPLHTTSHHHSA-HPHLQQQQQQQQHAVVA-- 69 Query: 372 RAHGS*VQDASALSSNTRHA 313 + S +Q S+ T H+ Sbjct: 70 SSPSSVLQQQQQQSTPTTHS 89
>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 699 Score = 30.8 bits (68), Expect = 2.7 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Frame = -1 Query: 534 RDEVTAQVHHHIHHVCPGIETRSPQ----YRSRGHRQAFHPAMQAHEPSNSITKVGWHRA 367 +DE +V HH HH P E +++ HRQ+ H SI ++ H Sbjct: 407 QDEYKTEVPHHHHHRVPREEDEEVSAELGHQAPSHRQSHQDEETGHGQRGSIKEMSHHPP 466 Query: 366 HGS*VQDASAL 334 + V+D S L Sbjct: 467 GHTVVKDRSHL 477
>RB_MOUSE (P13405) Retinoblastoma-associated protein (PP105) (RB)| Length = 921 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +3 Query: 132 PQPPPAGGDPSEDESAAELP--RLTVTQVEQ 218 P PPP DP++D ELP RL ++E+ Sbjct: 18 PPPPPREDDPAQDSGPEELPLARLEFEEIEE 48
>SYFB_NITOC (Q3JBZ7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 793 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = +1 Query: 388 GYAIGWFMGLHCWMK-RLTMTSRTILWTSCLDA 483 G A+GW LH W++ +L ++SR L++ L+A Sbjct: 654 GQAVGWLGALHPWLESKLDLSSRAYLFSLQLEA 686
>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/63 (23%), Positives = 28/63 (44%) Frame = +3 Query: 153 GDPSEDESAAELPRLTVTQVEQMKVEARVADIYRVLFDAAPNAKSAVLELWRDQHVEYLT 332 G PS S +LP+ T+ Q ++ + + + + +L ++ L+ W D T Sbjct: 322 GKPSAASSKTKLPKFTILQTSEVSLPSDPSCVEEILRESQHLTPGFTLQKWNDPTTRAST 381 Query: 333 KGL 341 K L Sbjct: 382 KML 384
>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/63 (23%), Positives = 28/63 (44%) Frame = +3 Query: 153 GDPSEDESAAELPRLTVTQVEQMKVEARVADIYRVLFDAAPNAKSAVLELWRDQHVEYLT 332 G PS S +LP+ T+ Q ++ + + + + +L ++ L+ W D T Sbjct: 322 GKPSAASSKTKLPKFTILQTSEVSLPSDPSCVEEILRESQHLTPGFTLQKWNDPTTRAST 381 Query: 333 KGL 341 K L Sbjct: 382 KML 384 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,864,627 Number of Sequences: 219361 Number of extensions: 1006588 Number of successful extensions: 3806 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3611 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3787 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
