Clone Name | bart44b01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | TAL1_MOUSE (P22091) T-cell acute lymphocytic leukemia-1 protein ... | 30 | 4.1 | 2 | KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1... | 30 | 4.1 | 3 | RODA_SHIFL (P0ABG9) Rod shape-determining protein rodA | 29 | 9.1 | 4 | RODA_ECOLI (P0ABG7) Rod shape-determining protein rodA | 29 | 9.1 | 5 | RODA_ECO57 (P0ABG8) Rod shape-determining protein rodA | 29 | 9.1 |
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>TAL1_MOUSE (P22091) T-cell acute lymphocytic leukemia-1 protein homolog (TAL-1| protein) (Stem cell protein) Length = 329 Score = 30.4 bits (67), Expect = 4.1 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +3 Query: 345 LQVPQPHVCRRDIHAPVPAVERDPDHEPGGGRLV 446 L+VP +CR AP PA P PG GR+V Sbjct: 86 LRVPTTELCRPPGPAPAPAPASAPAELPGDGRMV 119
>KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-)| (MURUS3 protein) Length = 619 Score = 30.4 bits (67), Expect = 4.1 Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 39/150 (26%) Frame = +1 Query: 265 EDDPVGRLKVYVYELPTKYNKKMVAKDSRCLS---------------------------- 360 + DP G +YV+ LP+K+N+ M+ +D + LS Sbjct: 147 KSDPCGGKYIYVHNLPSKFNEDML-RDCKKLSLWTNMCKFTTNAGLGPPLENVEGVFSDE 205 Query: 361 -----HMFAAEIFMHRFLLSSAIRTMNPEEADWFYTPVYTTCDLTP--WGHPLPFKPPRI 519 + FA ++ + T + A + P Y D+ WG+ + Sbjct: 206 GWYATNQFAVDVIFSNRMKQYKCLTNDSSLAAAIFVPFYAGFDIARYLWGYNIS------ 259 Query: 520 MRSAVQFISSHW----PYWNRTAGADHFFV 597 R A W P W+ G DHF V Sbjct: 260 RRDAASLELVDWLMKRPEWDIMRGKDHFLV 289
>RODA_SHIFL (P0ABG9) Rod shape-determining protein rodA| Length = 370 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -1 Query: 512 GGLKGNGWPHGVRSQVVY 459 GGL+G GW HG +SQ+ + Sbjct: 238 GGLRGKGWLHGTQSQLEF 255
>RODA_ECOLI (P0ABG7) Rod shape-determining protein rodA| Length = 370 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -1 Query: 512 GGLKGNGWPHGVRSQVVY 459 GGL+G GW HG +SQ+ + Sbjct: 238 GGLRGKGWLHGTQSQLEF 255
>RODA_ECO57 (P0ABG8) Rod shape-determining protein rodA| Length = 370 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -1 Query: 512 GGLKGNGWPHGVRSQVVY 459 GGL+G GW HG +SQ+ + Sbjct: 238 GGLRGKGWLHGTQSQLEF 255 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,045,736 Number of Sequences: 219361 Number of extensions: 1382687 Number of successful extensions: 4266 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 4075 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4263 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)