ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart44b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TAL1_MOUSE (P22091) T-cell acute lymphocytic leukemia-1 protein ... 30 4.1
2KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1... 30 4.1
3RODA_SHIFL (P0ABG9) Rod shape-determining protein rodA 29 9.1
4RODA_ECOLI (P0ABG7) Rod shape-determining protein rodA 29 9.1
5RODA_ECO57 (P0ABG8) Rod shape-determining protein rodA 29 9.1

>TAL1_MOUSE (P22091) T-cell acute lymphocytic leukemia-1 protein homolog (TAL-1|
           protein) (Stem cell protein)
          Length = 329

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 345 LQVPQPHVCRRDIHAPVPAVERDPDHEPGGGRLV 446
           L+VP   +CR    AP PA    P   PG GR+V
Sbjct: 86  LRVPTTELCRPPGPAPAPAPASAPAELPGDGRMV 119



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>KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-)|
           (MURUS3 protein)
          Length = 619

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 39/150 (26%)
 Frame = +1

Query: 265 EDDPVGRLKVYVYELPTKYNKKMVAKDSRCLS---------------------------- 360
           + DP G   +YV+ LP+K+N+ M+ +D + LS                            
Sbjct: 147 KSDPCGGKYIYVHNLPSKFNEDML-RDCKKLSLWTNMCKFTTNAGLGPPLENVEGVFSDE 205

Query: 361 -----HMFAAEIFMHRFLLSSAIRTMNPEEADWFYTPVYTTCDLTP--WGHPLPFKPPRI 519
                + FA ++     +      T +   A   + P Y   D+    WG+ +       
Sbjct: 206 GWYATNQFAVDVIFSNRMKQYKCLTNDSSLAAAIFVPFYAGFDIARYLWGYNIS------ 259

Query: 520 MRSAVQFISSHW----PYWNRTAGADHFFV 597
            R A       W    P W+   G DHF V
Sbjct: 260 RRDAASLELVDWLMKRPEWDIMRGKDHFLV 289



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>RODA_SHIFL (P0ABG9) Rod shape-determining protein rodA|
          Length = 370

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 512 GGLKGNGWPHGVRSQVVY 459
           GGL+G GW HG +SQ+ +
Sbjct: 238 GGLRGKGWLHGTQSQLEF 255



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>RODA_ECOLI (P0ABG7) Rod shape-determining protein rodA|
          Length = 370

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 512 GGLKGNGWPHGVRSQVVY 459
           GGL+G GW HG +SQ+ +
Sbjct: 238 GGLRGKGWLHGTQSQLEF 255



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>RODA_ECO57 (P0ABG8) Rod shape-determining protein rodA|
          Length = 370

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 512 GGLKGNGWPHGVRSQVVY 459
           GGL+G GW HG +SQ+ +
Sbjct: 238 GGLRGKGWLHGTQSQLEF 255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,045,736
Number of Sequences: 219361
Number of extensions: 1382687
Number of successful extensions: 4266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4263
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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