Clone Name | bart44a06 |
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Clone Library Name | barley_pub |
>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)| Length = 262 Score = 110 bits (276), Expect = 2e-24 Identities = 75/163 (46%), Positives = 77/163 (47%), Gaps = 8/163 (4%) Frame = +1 Query: 97 MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 264 MEDERSTQSYQG EA +QVEVTDR VTGM Sbjct: 1 MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60 Query: 265 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENXXXXXXXXXXXXXXXXXXX 441 DGEKKETLFSKLHR VID+N Sbjct: 61 KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEEEEE-VIDDNGEVIKRKKKKGLKEKLQGK 119 Query: 442 XXXXXDNEAEHVTGLPAPMAPASVQT---HHDTDVVVEKIDGD 561 D E EHVTGLPAP APASVQT HHDTDVVVEKIDGD Sbjct: 120 LPGHKDTEGEHVTGLPAPAAPASVQTHGGHHDTDVVVEKIDGD 162
>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)| (DRF2) (mDia3) Length = 1098 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -1 Query: 169 GPCPSPPPDRPQLPGMTGCSSHPP 98 GPCP PPP P P + G PP Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = -1 Query: 166 PCPSPPPDRPQLPGMTGCSSHPP 98 P P PPP P LPG T S PP Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623
>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 878 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -2 Query: 93 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 4 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 317
>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 881 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -2 Query: 93 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 4 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 318 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,493,211 Number of Sequences: 219361 Number of extensions: 607789 Number of successful extensions: 3247 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2542 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3168 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)