ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart43h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KCNAE_DROME (Q02280) Potassium voltage-gated channel protein eag... 32 1.6
2ADEC_LACPL (Q88SR1) Adenine deaminase (EC 3.5.4.2) (Adenase) (Ad... 31 2.7
3SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4 30 3.5
4EMBP_RAT (Q63189) Eosinophil granule major basic protein precurs... 30 4.6
5ASPM_MOUSE (Q8CJ27) Abnormal spindle-like microcephaly-associate... 30 4.6
6ODO1_CAEBR (Q623T0) 2-oxoglutarate dehydrogenase E1 component, m... 30 4.6
7TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2.... 30 4.6
8VIPR_MELGA (Q91085) Vasoactive intestinal polypeptide receptor p... 29 7.8

>KCNAE_DROME (Q02280) Potassium voltage-gated channel protein eag (Ether-a-go-go|
            protein)
          Length = 1174

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/49 (42%), Positives = 27/49 (55%)
 Frame = +1

Query: 82   ATPKQGLAHVAAPRSTSPAGQFCSGGTASRPLAPSSAGLARNVQFTAQE 228
            A PKQ LA  A   + +PAG   SG T+S   AP+SA   +  Q TA +
Sbjct: 1046 APPKQTLASTAGTATAAPAGVAGSGMTSS---APASADQQQQHQSTADQ 1091



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>ADEC_LACPL (Q88SR1) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)|
          Length = 563

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = -3

Query: 454 TSNIHTIGIPGPWIYTDFPLIPIDFPSGFKAMVAADVCGQAIALELEQTH*AHDIGEVCA 275
           T   + IG+    I TD   +PID    F+A    D+    + + + + H  H+ G+V  
Sbjct: 368 TGLANVIGVQPNHIETDHLTLPIDATQNFEADCQRDI----LKMVVIERH--HNTGKVGV 421

Query: 274 GLFHGEGLR 248
           GL HG  L+
Sbjct: 422 GLVHGFALK 430



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>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = -1

Query: 234 KLLLCGKLNVSCKACGRRSQRTTGCATRAELARWRRASWRRYVGEALLRRCANRGDDETE 55
           KLL  G+L        R  QR +GC   AE   W   +    + + L R CA  GD +  
Sbjct: 666 KLLRDGELE-------RAVQRLSGCQRDAESFLWAEHAVVGEIADGLARACAALGDWQKS 718

Query: 54  ASRLVSQL----LRCGP 16
           A+ L   L    +R GP
Sbjct: 719 ATHLQRSLCVVEVRHGP 735



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>EMBP_RAT (Q63189) Eosinophil granule major basic protein precursor (MBP)|
          Length = 227

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 362 CFKSRWKVDGYEWEIRIYPRAGNPNRMNVRCVTL 463
           C + RW +DG  W    Y  AG P R   RCVTL
Sbjct: 174 CKRFRW-IDGSSWNFA-YWAAGQPRRGGGRCVTL 205



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>ASPM_MOUSE (Q8CJ27) Abnormal spindle-like microcephaly-associated protein|
            homolog (Calmodulin-binding protein 1) (Spindle and
            hydroxyurea checkpoint abnormal protein)
            (Calmodulin-binding protein Sha1)
          Length = 3122

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 186  RRSQRTTGCATRAELARWRRASWRR 112
            RR ++ T CATR + A WR  SWR+
Sbjct: 2844 RRQEKITSCATRIQ-ALWRGYSWRK 2867



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>ODO1_CAEBR (Q623T0) 2-oxoglutarate dehydrogenase E1 component, mitochondrial|
           precursor (EC 1.2.4.2) (Alpha-ketoglutarate
           dehydrogenase)
          Length = 1027

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 56  SVSSSPLLAQRRSKASPT*RRHEARRQRASSALVAQPVVLWLLRPQALHETFN 214
           ++S++PL+ QR+   + +  +HE     +SS  + Q    WL  P ++H +++
Sbjct: 29  TISATPLVQQRKQSVAAS-VKHEPFLNGSSSVYIEQMYETWLENPSSVHTSWD 80



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>TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand|
            and one amino acid protein 2)
          Length = 1055

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 194  PADEGAKGRLAVPPEQNWPAGDVLRGAATWA 102
            PA+  A+G  A PP   WP+  V R  A W+
Sbjct: 931  PAEAAAQGYPAPPPAPAWPSRPVPRSGAHWS 961



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>VIPR_MELGA (Q91085) Vasoactive intestinal polypeptide receptor precursor|
           (VIP-R) (VIP receptor)
          Length = 457

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 153 RAELAR-WRRASWRRYVGEALLRRCANRGDDETEASRLVSQLLRCGP 16
           +AEL R WRR    R++G  +     + G + T  S  +S L +C P
Sbjct: 396 QAELKRKWRRWHLERFLGSDMKYHHPSLGSNGTNFSTQISMLTKCSP 442


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,353,081
Number of Sequences: 219361
Number of extensions: 1900362
Number of successful extensions: 5835
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5833
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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