ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart43h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK058325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 321 1e-84
2ref|XM_480152.1| Oryza sativa (japonica cultivar-group), mRNA 313 3e-82
3dbj|AK101430.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 3e-82
4gb|AY106050.1| Zea mays PCO102595 mRNA sequence 301 1e-78
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
6dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
7gb|AC121930.3| Mus musculus BAC clone RP24-205C1 from chromosome... 46 0.12
8gb|AC147230.3| Mus musculus BAC clone RP23-239N12 from 15, compl... 46 0.12
9emb|AL355506.23| Human DNA sequence from clone RP3-366M24 on chr... 42 1.8
10dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 1.8
11emb|AJ516010.1|PTO516010 Peru tomato virus gene for polyprotein,... 42 1.8
12emb|AJ251884.1|HSA251884 Homo sapiens partial SLC22A3 gene for e... 42 1.8
13gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 7.2
14gb|AC148004.3| Mus musculus BAC clone RP23-352J18 from chromosom... 40 7.2
15gb|AC134404.17| Mus musculus chromosome 3, clone RP24-321M14, co... 40 7.2
16gb|BC116483.1| Danio rerio cDNA clone IMAGE:7280380, partial cds 40 7.2
17gb|AC117191.4| Mus musculus BAC clone RP23-58O15 from 18, comple... 40 7.2
18gb|AC098882.3| Mus musculus BAC clone RP23-122D13 from 12, compl... 40 7.2
19emb|AL359675.10| Human DNA sequence from clone RP11-767J14 on ch... 40 7.2
20emb|AL136320.7| Human DNA sequence from clone RP3-323N1 on chrom... 40 7.2
21emb|Z98762.1|SPAC4A8 S.pombe chromosome I cosmid c4A8 40 7.2
22emb|BX936431.7| Zebrafish DNA sequence from clone CH211-208A5 in... 40 7.2
23gb|BC097210.1| Danio rerio dedicator of cytokinesis 7, mRNA (cDN... 40 7.2
24gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome... 40 7.2
25gb|AE005979.1| Caulobacter crescentus CB15 section 305 of 359 of... 40 7.2
26gb|AC136191.5| Rattus norvegicus BAC CH230-52I17 (Children's Ho... 40 7.2
27gb|AF295063.1|AF314199S2 Homo sapiens neuroplastoma apoptosis-re... 40 7.2
28ref|NM_001019257.1| Schizosaccharomyces pombe 972h- translation ... 40 7.2
29dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
30gb|BC077110.1| Danio rerio dedicator of cytokinesis 7, mRNA (cDN... 40 7.2
31gb|AF131238.1|AF131238 Rattus norvegicus alpha 1,2-fucosyltransf... 40 7.2
32gb|AC124905.3| Equus caballus clone CH241-184O19, complete sequence 40 7.2
33ref|NM_031635.1| Rattus norvegicus fucosyltransferase 2 (secreto... 40 7.2
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.2
35dbj|AP005554.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
36dbj|AK098947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
37dbj|AK072043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
38dbj|AK068798.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
39dbj|AK059171.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
40emb|AL162872.4|CNS01RI5 Human chromosome 14 DNA sequence BAC R-7... 40 7.2
41gb|AC150714.3| Equus caballus clone CH241-187O21, complete sequence 40 7.2
42emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chro... 40 7.2
43gb|L26010.1|RNFUTB Rat alpha-1,2-fucosyltransferase (Futb) mRNA,... 40 7.2
44gb|DP000020.1| Equus caballus target 1 genomic scaffold 40 7.2
45dbj|AB006138.1| Rattus norvegicus FTB mRNA for alpha 1,2-fucosyl... 40 7.2
46dbj|D89140.1| Schizosaccharomyces pombe mRNA, partial cds, clone... 40 7.2 
>dbj|AK058325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B10, full
           insert sequence
          Length = 1618

 Score =  321 bits (162), Expect = 1e-84
 Identities = 326/380 (85%), Gaps = 3/380 (0%)
 Strand = Plus / Plus

                                                                       
Query: 153 agcctccggaggccggttctggtggcacggg---ccgccgccggcaacgcgccctcttcc 209
           |||||||||||||||||||| | ||| || |   |||||| ||||||||| || ||||||
Sbjct: 180 agcctccggaggccggttcttgcggcccgtgtagccgccggcggcaacgcaccgtcttcc 239

                                                                       
Query: 210 cccgcgggcgcggtcgtaactgagctcgacgtggtctccagcttcagcgagatcgtgccg 269
            ||| || || ||| || ||||||||||| |  ||  |||||||||||||||||||||||
Sbjct: 240 tccgtggacgaggtggtcactgagctcgatgccgtggccagcttcagcgagatcgtgccg 299

                                                                       
Query: 270 gacacagtcgtcttcgatgattttgagaagtttgcgccgacggcggccaccgtgagctct 329
           || || ||||| |||||||| || ||||||||||||||||| || ||||| |||||||| 
Sbjct: 300 gataccgtcgtgttcgatgacttcgagaagtttgcgccgaccgccgccacggtgagctcg 359

                                                                       
Query: 330 tcgctgttgcttgggatcgcagggctcccggataccaagttcaagagtgccattgacacc 389
           |||||| |||| || ||||| || ||||||||||| |||||||||||||| || || || 
Sbjct: 360 tcgctgctgctcggtatcgctggcctcccggatacaaagttcaagagtgctatagataca 419

                                                                       
Query: 390 gcattggcagatggtgaatgtaacacaatggagaagcccggggaccggatgtcctgttac 449
           ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 420 gcattggcagacggtgaatgtaacacaatggagaagcccgaggaccggatgtcctgtttc 479

                                                                       
Query: 450 cttaccaaggccctggggaatgttggagctgagctggctcatcaagttcctggaagagtg 509
           || |||||||||||||  ||||||||||||||  ||||||||| ||| |||||  | |||
Sbjct: 480 ctaaccaaggccctggcaaatgttggagctgaaatggctcatctagtccctggtcgggtg 539

                               
Query: 510 tcgacggaaatagatgctcg 529
           ||||| ||||||||||||||
Sbjct: 540 tcgactgaaatagatgctcg 559



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                
Query: 25 ttcctccgatccc-agctccacccatggcgctctccat 61
          ||||||||||||| | ||||||| ||||||||||||||
Sbjct: 45 ttcctccgatccccacctccaccaatggcgctctccat 82
to top
>ref|XM_480152.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1618

 Score =  313 bits (158), Expect = 3e-82
 Identities = 325/380 (85%), Gaps = 3/380 (0%)
 Strand = Plus / Plus

                                                                       
Query: 153 agcctccggaggccggttctggtggcacggg---ccgccgccggcaacgcgccctcttcc 209
           |||||||||||||||||||| | ||| || |   |||||| ||||||||| || ||||||
Sbjct: 180 agcctccggaggccggttcttgcggcccgtgtagccgccggcggcaacgcaccgtcttcc 239

                                                                       
Query: 210 cccgcgggcgcggtcgtaactgagctcgacgtggtctccagcttcagcgagatcgtgccg 269
            ||| || || ||| || ||||||||||| |  ||  |||||||||||||||||||||||
Sbjct: 240 tccgtggacgaggtggtcactgagctcgatgccgtggccagcttcagcgagatcgtgccg 299

                                                                       
Query: 270 gacacagtcgtcttcgatgattttgagaagtttgcgccgacggcggccaccgtgagctct 329
           || || ||||| |||||||| || ||||||||||||||||| || ||||| |||||||| 
Sbjct: 300 gataccgtcgtgttcgatgacttcgagaagtttgcgccgaccgccgccacggtgagctcg 359

                                                                       
Query: 330 tcgctgttgcttgggatcgcagggctcccggataccaagttcaagagtgccattgacacc 389
           |||||| |||| || ||||| || ||||||||||| |||||||||||||| || || || 
Sbjct: 360 tcgctgctgctcggtatcgctggcctcccggatacaaagttcaagagtgctatagataca 419

                                                                       
Query: 390 gcattggcagatggtgaatgtaacacaatggagaagcccggggaccggatgtcctgttac 449
           || |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 420 gcgttggcagacggtgaatgtaacacaatggagaagcccgaggaccggatgtcctgtttc 479

                                                                       
Query: 450 cttaccaaggccctggggaatgttggagctgagctggctcatcaagttcctggaagagtg 509
           || |||||||||||||  ||||||||||||||  ||||||||| ||| |||||  | |||
Sbjct: 480 ctaaccaaggccctggcaaatgttggagctgaaatggctcatctagtccctggtcgggtg 539

                               
Query: 510 tcgacggaaatagatgctcg 529
           ||||| ||||||||||||||
Sbjct: 540 tcgactgaaatagatgctcg 559



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                
Query: 25 ttcctccgatccc-agctccacccatggcgctctccat 61
          ||||||||||||| | ||||||| ||||||||||||||
Sbjct: 45 ttcctccgatccccacctccaccaatggcgctctccat 82
to top
>dbj|AK101430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038K01, full
           insert sequence
          Length = 2631

 Score =  313 bits (158), Expect = 3e-82
 Identities = 325/380 (85%), Gaps = 3/380 (0%)
 Strand = Plus / Plus

                                                                       
Query: 153 agcctccggaggccggttctggtggcacggg---ccgccgccggcaacgcgccctcttcc 209
           |||||||||||||||||||| | ||| || |   |||||| ||||||||| || ||||||
Sbjct: 153 agcctccggaggccggttcttgcggcccgtgtagccgccggcggcaacgcaccgtcttcc 212

                                                                       
Query: 210 cccgcgggcgcggtcgtaactgagctcgacgtggtctccagcttcagcgagatcgtgccg 269
            ||| || || ||| || ||||||||||| |  ||  |||||||||||||||||||||||
Sbjct: 213 tccgtggacgaggtggtcactgagctcgatgccgtggccagcttcagcgagatcgtgccg 272

                                                                       
Query: 270 gacacagtcgtcttcgatgattttgagaagtttgcgccgacggcggccaccgtgagctct 329
           || || ||||| |||||||| || ||||||||||||||||| || ||||| |||||||| 
Sbjct: 273 gataccgtcgtgttcgatgacttcgagaagtttgcgccgaccgccgccacggtgagctcg 332

                                                                       
Query: 330 tcgctgttgcttgggatcgcagggctcccggataccaagttcaagagtgccattgacacc 389
           |||||| |||| || ||||| || ||||||||||| |||||||||||||| || || || 
Sbjct: 333 tcgctgctgctcggtatcgctggcctcccggatacaaagttcaagagtgctatagataca 392

                                                                       
Query: 390 gcattggcagatggtgaatgtaacacaatggagaagcccggggaccggatgtcctgttac 449
           || |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 393 gcgttggcagacggtgaatgtaacacaatggagaagcccgaggaccggatgtcctgtttc 452

                                                                       
Query: 450 cttaccaaggccctggggaatgttggagctgagctggctcatcaagttcctggaagagtg 509
           || |||||||||||||  ||||||||||||||  ||||||||| ||| |||||  | |||
Sbjct: 453 ctaaccaaggccctggcaaatgttggagctgaaatggctcatctagtccctggtcgggtg 512

                               
Query: 510 tcgacggaaatagatgctcg 529
           ||||| ||||||||||||||
Sbjct: 513 tcgactgaaatagatgctcg 532



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                
Query: 25 ttcctccgatccc-agctccacccatggcgctctccat 61
          ||||||||||||| | ||||||| ||||||||||||||
Sbjct: 18 ttcctccgatccccacctccaccaatggcgctctccat 55
to top
>gb|AY106050.1| Zea mays PCO102595 mRNA sequence
          Length = 1415

 Score =  301 bits (152), Expect = 1e-78
 Identities = 332/392 (84%)
 Strand = Plus / Plus

                                                                       
Query: 138 aagcccgcggttttcagcctccggaggccggttctggtggcacgggccgccgccggcaac 197
           |||||||||  ||||||||| ||||||||   |||||  || ||||||||||| ||||||
Sbjct: 136 aagcccgcgactttcagcctacggaggccacatctggccgcgcgggccgccgctggcaac 195

                                                                       
Query: 198 gcgccctcttcccccgcgggcgcggtcgtaactgagctcgacgtggtctccagcttcagc 257
           || ||| | ||||| |   ||| |||||| ||||||||||||| |||| || ||||||||
Sbjct: 196 gcacccacgtccccggtccgcgaggtcgtcactgagctcgacgcggtcgccggcttcagc 255

                                                                       
Query: 258 gagatcgtgccggacacagtcgtcttcgatgattttgagaagtttgcgccgacggcggcc 317
           ||||||||||||||||| ||||| ||||||||||| |||| ||| || || |||||||||
Sbjct: 256 gagatcgtgccggacaccgtcgtgttcgatgatttcgagaggttcgcacccacggcggcc 315

                                                                       
Query: 318 accgtgagctcttcgctgttgcttgggatcgcagggctcccggataccaagttcaagagt 377
           || |||||||| |||||| ||||||||||| | |||||||| || || ||||||||||||
Sbjct: 316 acagtgagctcgtcgctgctgcttgggatcactgggctcccagacactaagttcaagagt 375

                                                                       
Query: 378 gccattgacaccgcattggcagatggtgaatgtaacacaatggagaagcccggggaccgg 437
           || || || || ||| ||||||||||||| || ||| || |||||||| | | |||| ||
Sbjct: 376 gcgatagatactgcactggcagatggtgagtgcaacgcactggagaaggctgaggacagg 435

                                                                       
Query: 438 atgtcctgttaccttaccaaggccctggggaatgttggagctgagctggctcatcaagtt 497
           |||||||||||||| |||||||| || |  |||||||| ||||| |||||||||||||| 
Sbjct: 436 atgtcctgttacctcaccaaggctcttgcaaatgttggcgctgaactggctcatcaagtc 495

                                           
Query: 498 cctggaagagtgtcgacggaaatagatgctcg 529
           ||||| ||||| ||||||||||||||||||||
Sbjct: 496 cctgggagagtttcgacggaaatagatgctcg 527
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  101 bits (51), Expect = 2e-18
 Identities = 63/67 (94%)
 Strand = Plus / Minus

                                                                           
Query: 393     ttggcagatggtgaatgtaacacaatggagaagcccggggaccggatgtcctgttacctt 452
               |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| 
Sbjct: 3125067 ttggcagacggtgaatgtaacacaatggagaagcccgaggaccggatgtcctgtttccta 3125008

                      
Query: 453     accaagg 459
               |||||||
Sbjct: 3125007 accaagg 3125001



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                           
Query: 299     gtttgcgccgacggcggccaccgtgagctcttcgctgttgcttgggatcgcagggctccc 358
               |||||||||||| || ||||| |||||||| |||||| |||| || ||||| || |||||
Sbjct: 3125250 gtttgcgccgaccgccgccacggtgagctcgtcgctgctgctcggtatcgctggcctccc 3125191

                               
Query: 359     ggataccaagttcaag 374
               |||||| |||||||||
Sbjct: 3125190 ggatacaaagttcaag 3125175



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                     
Query: 247     ccagcttcagcgagatcgtgccggacacagtcgtcttcgatgattttgagaagt 300
               ||||||||||||||||||||||||| || ||||| |||||||| || |||||||
Sbjct: 3125409 ccagcttcagcgagatcgtgccggataccgtcgtgttcgatgacttcgagaagt 3125356



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                           
Query: 457     aggccctggggaatgttggagctgagctggctcatcaagttcctggaagagtgtcgacgg 516
               |||||||||  ||||||||||||||  ||||||||| ||| |||||  | |||||||| |
Sbjct: 3124928 aggccctggcaaatgttggagctgaaatggctcatctagtccctggtcgggtgtcgactg 3124869

                            
Query: 517     aaatagatgctcg 529
               |||||||||||||
Sbjct: 3124868 aaatagatgctcg 3124856



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                     
Query: 25      ttcctccgatccc-agctccacccatggcgctctccat 61
               ||||||||||||| | ||||||| ||||||||||||||
Sbjct: 3125851 ttcctccgatccccacctccaccaatggcgctctccat 3125814



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 153     agcctccggaggccggttct 172
               ||||||||||||||||||||
Sbjct: 3125595 agcctccggaggccggttct 3125576
to top
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1066_B03
          Length = 115339

 Score =  101 bits (51), Expect = 2e-18
 Identities = 63/67 (94%)
 Strand = Plus / Minus

                                                                         
Query: 393   ttggcagatggtgaatgtaacacaatggagaagcccggggaccggatgtcctgttacctt 452
             |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| 
Sbjct: 84551 ttggcagacggtgaatgtaacacaatggagaagcccgaggaccggatgtcctgtttccta 84492

                    
Query: 453   accaagg 459
             |||||||
Sbjct: 84491 accaagg 84485



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                         
Query: 299   gtttgcgccgacggcggccaccgtgagctcttcgctgttgcttgggatcgcagggctccc 358
             |||||||||||| || ||||| |||||||| |||||| |||| || ||||| || |||||
Sbjct: 84734 gtttgcgccgaccgccgccacggtgagctcgtcgctgctgctcggtatcgctggcctccc 84675

                             
Query: 359   ggataccaagttcaag 374
             |||||| |||||||||
Sbjct: 84674 ggatacaaagttcaag 84659



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                   
Query: 247   ccagcttcagcgagatcgtgccggacacagtcgtcttcgatgattttgagaagt 300
             ||||||||||||||||||||||||| || ||||| |||||||| || |||||||
Sbjct: 84893 ccagcttcagcgagatcgtgccggataccgtcgtgttcgatgacttcgagaagt 84840



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                         
Query: 457   aggccctggggaatgttggagctgagctggctcatcaagttcctggaagagtgtcgacgg 516
             |||||||||  ||||||||||||||  ||||||||| ||| |||||  | |||||||| |
Sbjct: 84412 aggccctggcaaatgttggagctgaaatggctcatctagtccctggtcgggtgtcgactg 84353

                          
Query: 517   aaatagatgctcg 529
             |||||||||||||
Sbjct: 84352 aaatagatgctcg 84340



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                   
Query: 25    ttcctccgatccc-agctccacccatggcgctctccat 61
             ||||||||||||| | ||||||| ||||||||||||||
Sbjct: 85335 ttcctccgatccccacctccaccaatggcgctctccat 85298



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   agcctccggaggccggttct 172
             ||||||||||||||||||||
Sbjct: 85079 agcctccggaggccggttct 85060
to top
>gb|AC121930.3| Mus musculus BAC clone RP24-205C1 from chromosome 15, complete sequence
          Length = 148390

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 73     cctcatctcccttcctccccgcc 95
              |||||||||||||||||||||||
Sbjct: 113193 cctcatctcccttcctccccgcc 113171
to top
>gb|AC147230.3| Mus musculus BAC clone RP23-239N12 from 15, complete sequence
          Length = 255976

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 73    cctcatctcccttcctccccgcc 95
             |||||||||||||||||||||||
Sbjct: 74972 cctcatctcccttcctccccgcc 74994
to top
>emb|AL355506.23| Human DNA sequence from clone RP3-366M24 on chromosome 6q25.3-26
             Contains the 5' end of the SLC22A3 gene for solute carrier
             family 22 (extraneuronal monoamine transporter), member 3
             (extraneuronal monoamine transporter solute carrier family
             22 (organic cation transporter), member 3 (EMT, EMTh,
             OCT3)) and a CpG island, complete sequence
          Length = 82919

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     ctcactccccaacccacttcc 28
             |||||||||||||||||||||
Sbjct: 16077 ctcactccccaacccacttcc 16057
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 172     tggtggcacgggccgccgccg 192
               |||||||||||||||||||||
Sbjct: 1274519 tggtggcacgggccgccgccg 1274499
to top
>emb|AJ516010.1|PTO516010 Peru tomato virus gene for polyprotein, genomic RNA, isolate PPK11
          Length = 9892

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 367  agttcaagagtgccattgaca 387
            |||||||||||||||||||||
Sbjct: 5367 agttcaagagtgccattgaca 5387
to top
>emb|AJ251884.1|HSA251884 Homo sapiens partial SLC22A3 gene for extraneuronal monoamine
            transporter (EMT), exon 1
          Length = 5279

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 8    ctcactccccaacccacttcc 28
            |||||||||||||||||||||
Sbjct: 1420 ctcactccccaacccacttcc 1440
to top
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 184     ccgccgccggcaacgcgccc 203
               ||||||||||||||||||||
Sbjct: 2528164 ccgccgccggcaacgcgccc 2528183
to top
>gb|AC148004.3| Mus musculus BAC clone RP23-352J18 from chromosome 18, complete sequence
          Length = 206275

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    agatggtgaatgtaacacaa 417
              ||||||||||||||||||||
Sbjct: 129739 agatggtgaatgtaacacaa 129758
to top
>gb|AC134404.17| Mus musculus chromosome 3, clone RP24-321M14, complete sequence
          Length = 218224

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    accaaggccctggggaatgt 472
              ||||||||||||||||||||
Sbjct: 142872 accaaggccctggggaatgt 142891
to top
>gb|BC116483.1| Danio rerio cDNA clone IMAGE:7280380, partial cds
          Length = 1150

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 gccaccgtgagctcttcgct 334
           ||||||||||||||||||||
Sbjct: 714 gccaccgtgagctcttcgct 733
to top
>gb|AC117191.4| Mus musculus BAC clone RP23-58O15 from 18, complete sequence
          Length = 149461

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   agatggtgaatgtaacacaa 417
             ||||||||||||||||||||
Sbjct: 54893 agatggtgaatgtaacacaa 54912
to top
>gb|AC098882.3| Mus musculus BAC clone RP23-122D13 from 12, complete sequence
          Length = 223130

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    acccacctcatctcccttcctccc 91
             ||||| ||||||||||||||||||
Sbjct: 11284 acccatctcatctcccttcctccc 11261
to top
>emb|AL359675.10| Human DNA sequence from clone RP11-767J14 on chromosome 6, complete
             sequence
          Length = 110901

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   agctggctcatcaagttcct 500
             ||||||||||||||||||||
Sbjct: 17889 agctggctcatcaagttcct 17870
to top
>emb|AL136320.7| Human DNA sequence from clone RP3-323N1 on chromosome 10 Contains the
             5' end of the CUGBP2 gene for CUG triplet repeat RNA
             binding protein 2, a novel gene and a CpG island, complete
             sequence
          Length = 55550

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   aatgtaacacaatggagaag 425
             ||||||||||||||||||||
Sbjct: 26138 aatgtaacacaatggagaag 26119
to top
>emb|Z98762.1|SPAC4A8 S.pombe chromosome I cosmid c4A8
          Length = 43895

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   gcattggcagatggtgaatg 409
             ||||||||||||||||||||
Sbjct: 42473 gcattggcagatggtgaatg 42454
to top
>emb|BX936431.7| Zebrafish DNA sequence from clone CH211-208A5 in linkage group 6,
             complete sequence
          Length = 127584

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   gccaccgtgagctcttcgct 334
             ||||||||||||||||||||
Sbjct: 55223 gccaccgtgagctcttcgct 55242
to top
>gb|BC097210.1| Danio rerio dedicator of cytokinesis 7, mRNA (cDNA clone
           IMAGE:7427102), partial cds
          Length = 906

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 gccaccgtgagctcttcgct 334
           ||||||||||||||||||||
Sbjct: 710 gccaccgtgagctcttcgct 729
to top
>gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome 12, complete sequence
          Length = 201550

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 68     acccacctcatctcccttcctccc 91
              ||||| ||||||||||||||||||
Sbjct: 172374 acccatctcatctcccttcctccc 172397
to top
>gb|AE005979.1| Caulobacter crescentus CB15 section 305 of 359 of the complete genome
          Length = 11597

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  cttcagcgagatcgtgccgg 270
            ||||||||||||||||||||
Sbjct: 6854 cttcagcgagatcgtgccgg 6835
to top
>gb|AC136191.5| Rattus norvegicus  BAC CH230-52I17 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 221923

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   aatgttggagctgagctggc 487
             ||||||||||||||||||||
Sbjct: 84915 aatgttggagctgagctggc 84896
to top
>gb|AF295063.1|AF314199S2 Homo sapiens neuroplastoma apoptosis-related RNA-binding protein
             (CUGBP2) gene, exons 1c and 2
          Length = 55550

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   aatgtaacacaatggagaag 425
             ||||||||||||||||||||
Sbjct: 26138 aatgtaacacaatggagaag 26119
to top
>ref|NM_001019257.1| Schizosaccharomyces pombe 972h- translation initation factor 3 (eif3
            subunit) (SPAC1E11.01c), partial mRNA
          Length = 2757

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  gcattggcagatggtgaatg 409
            ||||||||||||||||||||
Sbjct: 2260 gcattggcagatggtgaatg 2279
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 40       ctccacccatggcgctctcc 59
                ||||||||||||||||||||
Sbjct: 10276055 ctccacccatggcgctctcc 10276074
to top
>gb|BC077110.1| Danio rerio dedicator of cytokinesis 7, mRNA (cDNA clone
           IMAGE:7145816), partial cds
          Length = 1165

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 gccaccgtgagctcttcgct 334
           ||||||||||||||||||||
Sbjct: 718 gccaccgtgagctcttcgct 737
to top
>gb|AF131238.1|AF131238 Rattus norvegicus alpha 1,2-fucosyltransferase B (FTB) gene, complete
            cds
          Length = 1847

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 468  aatgttggagctgagctggc 487
            ||||||||||||||||||||
Sbjct: 1447 aatgttggagctgagctggc 1428
to top
>gb|AC124905.3| Equus caballus clone CH241-184O19, complete sequence
          Length = 171209

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 389  cgcattggcagatggtgaatgtaa 412
            |||||||||| |||||||||||||
Sbjct: 1704 cgcattggcacatggtgaatgtaa 1727
to top
>ref|NM_031635.1| Rattus norvegicus fucosyltransferase 2 (secretor status included)
            (Fut2), mRNA
          Length = 2984

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 468  aatgttggagctgagctggc 487
            ||||||||||||||||||||
Sbjct: 1450 aatgttggagctgagctggc 1431
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 183     gccgccgccggcaacgcgcc 202
               ||||||||||||||||||||
Sbjct: 2879073 gccgccgccggcaacgcgcc 2879092
to top
>dbj|AP005554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1118_A10
          Length = 95161

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ctccacccatggcgctctcc 59
             ||||||||||||||||||||
Sbjct: 77204 ctccacccatggcgctctcc 77223
to top
>dbj|AK098947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050E08, full
           insert sequence
          Length = 1849

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  ctccacccatggcgctctcc 59
           ||||||||||||||||||||
Sbjct: 100 ctccacccatggcgctctcc 119
to top
>dbj|AK072043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108N11, full
           insert sequence
          Length = 1816

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  ctccacccatggcgctctcc 59
           ||||||||||||||||||||
Sbjct: 100 ctccacccatggcgctctcc 119
to top
>dbj|AK068798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164B18,
          full insert sequence
          Length = 1793

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 40 ctccacccatggcgctctcc 59
          ||||||||||||||||||||
Sbjct: 55 ctccacccatggcgctctcc 74
to top
>dbj|AK059171.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F01,
          full insert sequence
          Length = 1605

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 40 ctccacccatggcgctctcc 59
          ||||||||||||||||||||
Sbjct: 46 ctccacccatggcgctctcc 65
to top
>emb|AL162872.4|CNS01RI5 Human chromosome 14 DNA sequence BAC R-764E10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173106

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    gaatgtaacacaatggagaa 424
              ||||||||||||||||||||
Sbjct: 144034 gaatgtaacacaatggagaa 144053
to top
>gb|AC150714.3| Equus caballus clone CH241-187O21, complete sequence
          Length = 51837

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 389   cgcattggcagatggtgaatgtaa 412
             |||||||||| |||||||||||||
Sbjct: 45941 cgcattggcacatggtgaatgtaa 45964
to top
>emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chromosome 12, complete
              sequence
          Length = 224188

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 68     acccacctcatctcccttcctccc 91
              ||||| ||||||||||||||||||
Sbjct: 190487 acccatctcatctcccttcctccc 190464
to top
>gb|L26010.1|RNFUTB Rat alpha-1,2-fucosyltransferase (Futb) mRNA, 3' end
          Length = 977

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 468 aatgttggagctgagctggc 487
           ||||||||||||||||||||
Sbjct: 577 aatgttggagctgagctggc 558
to top
>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 389     cgcattggcagatggtgaatgtaa 412
               |||||||||| |||||||||||||
Sbjct: 1634348 cgcattggcacatggtgaatgtaa 1634371
to top
>dbj|AB006138.1| Rattus norvegicus FTB mRNA for alpha 1,2-fucosyltransferase, complete
            cds
          Length = 2984

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 468  aatgttggagctgagctggc 487
            ||||||||||||||||||||
Sbjct: 1450 aatgttggagctgagctggc 1431
to top
>dbj|D89140.1| Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0552
          Length = 1168

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 390 gcattggcagatggtgaatg 409
           ||||||||||||||||||||
Sbjct: 550 gcattggcagatggtgaatg 569


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,210,377
Number of Sequences: 3902068
Number of extensions: 4210377
Number of successful extensions: 89335
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88864
Number of HSP's gapped (non-prelim): 468
length of query: 529
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 506
effective length of database: 17,143,297,704
effective search space: 8674508638224
effective search space used: 8674508638224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top