ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart43g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 44 0.25
2ref|XM_657547.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.00
3gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 3.9
4gb|CP000097.1| Synechococcus sp. CC9902, complete genome 40 3.9
5gb|AC147921.2| Xenopus tropicalis clone CH216-95N3, complete seq... 40 3.9
6gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 3.9
7gb|AC138582.22| Pan troglodytes clone rp43-21p1, complete sequence 40 3.9
8gb|AC104187.2| Homo sapiens chromosome 3 clone RP11-424N24, comp... 40 3.9
9gb|AC000029.17| Homo sapiens Chromosome 22q11.2 BAC Clone 865e9 ... 40 3.9
10gb|AC154307.2| Mus musculus BAC clone RP23-377C12 from chromosom... 40 3.9
11dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.9

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 168     ccaacagcaccgcctgggtgccgatgaacc 197
               |||||||||||||| ||||||||| |||||
Sbjct: 2411624 ccaacagcaccgccagggtgccgaggaacc 2411595



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>ref|XM_657547.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5035.2), mRNA
          Length = 1443

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 198 gaccacacggcccatgctcat 218
           |||||||||||||||||||||
Sbjct: 394 gaccacacggcccatgctcat 414



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 172     cagcaccgcctgggtgccga 191
               ||||||||||||||||||||
Sbjct: 1311876 cagcaccgcctgggtgccga 1311895



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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     ggcatcgatgtcgatgacat 267
               ||||||||||||||||||||
Sbjct: 2095407 ggcatcgatgtcgatgacat 2095388



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>gb|AC147921.2| Xenopus tropicalis clone CH216-95N3, complete sequence
          Length = 133860

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    cctgctgcctgagtgcaaat 58
             ||||||||||||||||||||
Sbjct: 56955 cctgctgcctgagtgcaaat 56974



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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 210     catgctcatcaacgtcgtcgagggcatc 237
               |||||||| ||||||| |||||||||||
Sbjct: 1857855 catgctcagcaacgtcttcgagggcatc 1857828



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>gb|AC138582.22| Pan troglodytes clone rp43-21p1, complete sequence
          Length = 119613

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 59    gcaggtgctagagatcaccatgaactcc 86
             ||||| ||||||||||||| ||||||||
Sbjct: 75924 gcaggagctagagatcaccctgaactcc 75897



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>gb|AC104187.2| Homo sapiens chromosome 3 clone RP11-424N24, complete sequence
          Length = 186052

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 110    agctccctcaagcacatcccagaa 133
              |||||||||||| |||||||||||
Sbjct: 156309 agctccctcaaggacatcccagaa 156286



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>gb|AC000029.17| Homo sapiens Chromosome 22q11.2 BAC Clone 865e9 In GNAZ-BCR Region,
              complete sequence
          Length = 142979

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 59     gcaggtgctagagatcaccatgaactcc 86
              ||||| ||||||||||||| ||||||||
Sbjct: 123833 gcaggagctagagatcaccctgaactcc 123806



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>gb|AC154307.2| Mus musculus BAC clone RP23-377C12 from chromosome 9, complete sequence
          Length = 186985

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ctgcttctgatcatcttgtc 33
             ||||||||||||||||||||
Sbjct: 91321 ctgcttctgatcatcttgtc 91340



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 216     catcaacgtcgtcgagggca 235
               ||||||||||||||||||||
Sbjct: 7981555 catcaacgtcgtcgagggca 7981574


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,147,646
Number of Sequences: 3902068
Number of extensions: 2147646
Number of successful extensions: 39356
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39221
Number of HSP's gapped (non-prelim): 135
length of query: 300
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 278
effective length of database: 17,147,199,772
effective search space: 4766921536616
effective search space used: 4766921536616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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