ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart43g10 |
|---|---|
| Clone Library Name | barley_pub |
>CSN6A_ARATH (Q8W206) COP9 signalosome complex subunit 6a (Signalosome subunit| 6a) (AtCSN6a) Length = 317 Score = 192 bits (487), Expect = 8e-49 Identities = 95/139 (68%), Positives = 112/139 (80%) Frame = +1 Query: 178 GLTFKLHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVI 357 GLTFKLHPLVIVN+SDHYTRVK Q + PA + G S G + + PRV+GCVI Sbjct: 8 GLTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHG----SNNGEAMFQQNPRVYGCVI 63 Query: 358 GVQRGRTVEILNSFELVLDPVTGTLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTD 537 GVQRGRTVEI NSFEL+ DP T TL+R+FLEKK ELYKKVFP+FY+LGWYSTGSD +++D Sbjct: 64 GVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESD 123 Query: 538 ILMHKALMDINESPVYLLL 594 + +HKALMDINESPVY+LL Sbjct: 124 MHIHKALMDINESPVYVLL 142
>CSN6B_ARATH (Q8W1P0) COP9 signalosome complex subunit 6b (Signalosome subunit| 6b) (AtCSN6b) Length = 317 Score = 185 bits (469), Expect = 1e-46 Identities = 90/139 (64%), Positives = 110/139 (79%) Frame = +1 Query: 178 GLTFKLHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVI 357 GLTFKLHPLV++N+SDH+TRVK Q + PA + + G + A + PRV+GCVI Sbjct: 8 GLTFKLHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADA----MLLQNPRVYGCVI 63 Query: 358 GVQRGRTVEILNSFELVLDPVTGTLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTD 537 G+QRGRTVEI NSFEL+ DP TL+R+FLEKK ELYKKVFP+FYVLGWYSTGSD ++D Sbjct: 64 GLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESD 123 Query: 538 ILMHKALMDINESPVYLLL 594 + +HKALMDINESPVY+LL Sbjct: 124 MHIHKALMDINESPVYVLL 142
>CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (Dch6) Length = 341 Score = 91.7 bits (226), Expect = 1e-18 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 2/140 (1%) Frame = +1 Query: 181 LTFKLHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIG 360 +T LHPLVI+N+S+H+TR +AQ EP +V+G +IG Sbjct: 52 VTISLHPLVIMNISEHWTRFRAQHG------------------------EPRQVYGALIG 87 Query: 361 VQRGRTVEILNSFELVLDPVTG--TLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDT 534 Q+GR +EI+NSFEL D + + + + KK + YK+VF + +GWY+TG + Sbjct: 88 KQKGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTAD 147 Query: 535 DILMHKALMDINESPVYLLL 594 DI + + + INE P+ L L Sbjct: 148 DIKIQRQIAAINECPIMLQL 167
>CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| Length = 318 Score = 89.4 bits (220), Expect = 7e-18 Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 2/140 (1%) Frame = +1 Query: 181 LTFKLHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIG 360 +T LHPLVI+N+SDH+ R+++Q EG P +V G +IG Sbjct: 30 VTVALHPLVILNISDHWIRMRSQ-------------------EG-----RPMQVIGALIG 65 Query: 361 VQRGRTVEILNSFELV--LDPVTGTLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDT 534 Q GR +E++NSFEL+ ++ T+ + + K E +K+VF + LGWY+TG + Sbjct: 66 KQEGRNIEVMNSFELLSQINDEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPS 125 Query: 535 DILMHKALMDINESPVYLLL 594 DI +HK + +I ESP++L L Sbjct: 126 DIHVHKQVCEIIESPLFLKL 145
>CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) (Vpr-interacting protein) (hVIP) (MOV34 homolog) Length = 327 Score = 88.2 bits (217), Expect = 2e-17 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 2/136 (1%) Frame = +1 Query: 193 LHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRG 372 LHPLVI+N+SDH+ R+++Q EG P +V G +IG Q G Sbjct: 43 LHPLVILNISDHWIRMRSQ-------------------EG-----RPVQVIGALIGKQEG 78 Query: 373 RTVEILNSFELVLDPVTGTL--ERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTDILM 546 R +E++NSFEL+ V + ++ + K E +K+VF E LGWY+TG +DI + Sbjct: 79 RNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHV 138 Query: 547 HKALMDINESPVYLLL 594 HK + +I ESP++L L Sbjct: 139 HKQVCEIIESPLFLKL 154
>CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) Length = 324 Score = 88.2 bits (217), Expect = 2e-17 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 2/136 (1%) Frame = +1 Query: 193 LHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRG 372 LHPLVI+N+SDH+ R+++Q EG P +V G +IG Q G Sbjct: 40 LHPLVILNISDHWIRMRSQ-------------------EG-----RPMQVIGALIGKQEG 75 Query: 373 RTVEILNSFELVLDPVTGTL--ERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTDILM 546 R +E++NSFEL+ V + ++ + K E +K+VF E LGWY+TG +DI + Sbjct: 76 RNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHV 135 Query: 547 HKALMDINESPVYLLL 594 HK + +I ESP++L L Sbjct: 136 HKQVCEIIESPLFLKL 151
>CSN6_CAEEL (Q95PZ0) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| Length = 426 Score = 62.0 bits (149), Expect = 1e-09 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 6/116 (5%) Frame = +1 Query: 193 LHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRG 372 LHPLVI+ +S+HY+R K Q +G + +VFG ++G Q G Sbjct: 16 LHPLVIMQMSEHYSRTKVQ-------------------QGPTVK----KVFGAILGRQNG 52 Query: 373 RTVEILNSF------ELVLDPVTGTLERAFLEKKLELYKKVFPEFYVLGWYSTGSD 522 R VE +NSF E + +PVT + E L ++ + Y +VFPE V+G Y G D Sbjct: 53 RQVEAINSFVLKMETEEMAEPVTFSTEH--LLQRADQYLEVFPELQVIGLYCAGED 106
>CSN6A_BRAOL (P68356) COP9 signalosome complex subunit 6a (Signalosome subunit| 6a) (Fragments) Length = 66 Score = 60.1 bits (144), Expect = 5e-09 Identities = 28/37 (75%), Positives = 33/37 (89%) Frame = +1 Query: 367 RGRTVEILNSFELVLDPVTGTLERAFLEKKLELYKKV 477 +GRTVEI NSFEL+LDP T TL+R+FLEKK ELYKK+ Sbjct: 1 KGRTVEIFNSFELLLDPTTQTLDRSFLEKKQELYKKM 37
>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 361 Score = 56.2 bits (134), Expect = 7e-08 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 2/139 (1%) Frame = +1 Query: 178 GLTFKLHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVI 357 G +LHP+++ ++ D Y R A+ RV G ++ Sbjct: 93 GRVVRLHPVILASIVDSYERRNEGAA---------------------------RVIGTLL 125 Query: 358 GVQRGRTVEILNSFELVLDPVTG--TLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQD 531 G +VE+ N F + + ++ F + EL+KKV P +LGWY+TG D+ + Sbjct: 126 GTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITE 185 Query: 532 TDILMHKALMDINESPVYL 588 +L+H+ + +P++L Sbjct: 186 HSVLIHEYYSRESPNPIHL 204
>PSD7_ARATH (O24412) Probable 26S proteasome non-ATPase regulatory subunit 7| (26S proteasome regulatory subunit rpn8) (MOV34 protein) Length = 308 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 5/139 (3%) Frame = +1 Query: 193 LHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRG 372 +HPLV++++ DHY RV +S RV G ++G Sbjct: 19 VHPLVLLSIVDHYNRVAKDSS--------------------------KRVVGVLLGSSSR 52 Query: 373 RTVEILNSFELVL-----DPVTGTLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTD 537 V++ NS+ + DP L+ + E ++K++ + +V+GWYSTG +++ D Sbjct: 53 GVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLREND 112 Query: 538 ILMHKALMDINESPVYLLL 594 + +H +PV +++ Sbjct: 113 LDVHALFNGYVPNPVLVII 131
>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 357 Score = 55.1 bits (131), Expect = 2e-07 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 2/139 (1%) Frame = +1 Query: 178 GLTFKLHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVI 357 G +LHP+++ ++ D Y R A+ RV G ++ Sbjct: 89 GRVVRLHPVILASIVDSYERRNEGAA---------------------------RVIGTLL 121 Query: 358 GVQRGRTVEILNSFELVLDPVTG--TLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQD 531 G +VE+ N F + + ++ F + EL+KKV P +LGWY+TG D+ + Sbjct: 122 GTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITE 181 Query: 532 TDILMHKALMDINESPVYL 588 +L+H+ +P++L Sbjct: 182 HSVLIHEYYSREAPNPIHL 200
>RPN8_NEUCR (Q8WZY4) 26S proteasome regulatory subunit rpn-8| Length = 352 Score = 51.2 bits (121), Expect = 2e-06 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 5/137 (3%) Frame = +1 Query: 199 PLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRGRT 378 PLV+++V DHY R +A S + RV G ++G G+ Sbjct: 20 PLVLLSVVDHYNRTQANKS------------------------KSKRVVGVLLGQNDGKN 55 Query: 379 VEILNSFELVL-----DPVTGTLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTDIL 543 V + NSF + DP L+ ++E +++KKV ++GWY +G ++ +D+ Sbjct: 56 VRVSNSFAVPFEEDDKDPSVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLD 115 Query: 544 MHKALMDINESPVYLLL 594 +++ +P+ +++ Sbjct: 116 INELFKRYTPNPLLVIV 132
>RPN8_SCHPO (O74440) 26S proteasome regulatory subunit rpn8| Length = 324 Score = 48.5 bits (114), Expect = 1e-05 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 5/139 (3%) Frame = +1 Query: 193 LHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRG 372 +HPLV+++ D Y R SA+G+ RV G ++G G Sbjct: 19 VHPLVLLSAVDSYNR---------------------SAKGTKR-----RVVGILLGQNNG 52 Query: 373 RTVEILNSFELVLDPVTGT-----LERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTD 537 V + NS+ + + L+ F+E E++KK+ ++GWY TG ++ +D Sbjct: 53 DVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSD 112 Query: 538 ILMHKALMDINESPVYLLL 594 + ++ L +PV +++ Sbjct: 113 LEINNLLKKYIPNPVLVII 131
>PSD7_HUMAN (P51665) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Mov34 protein homolog) Length = 324 Score = 46.2 bits (108), Expect = 7e-05 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 5/127 (3%) Frame = +1 Query: 193 LHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRG 372 +HPLV+++V DH+ R+ GK RV G ++G + Sbjct: 11 VHPLVLLSVVDHFNRI-------------GKV------------GNQKRVVGVLLGSWQK 45 Query: 373 RTVEILNSFELVLDP-----VTGTLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTD 537 + +++ NSF + D L+ +LE ++KKV ++GWY TG + D Sbjct: 46 KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKND 105 Query: 538 ILMHKAL 558 I +++ + Sbjct: 106 IAINELM 112
>PSD7_MOUSE (P26516) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Mov34 protein) Length = 321 Score = 46.2 bits (108), Expect = 7e-05 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 5/127 (3%) Frame = +1 Query: 193 LHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRG 372 +HPLV+++V DH+ R+ GK RV G ++G + Sbjct: 11 VHPLVLLSVVDHFNRI-------------GKV------------GNQKRVVGVLLGSWQK 45 Query: 373 RTVEILNSFELVLDP-----VTGTLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTD 537 + +++ NSF + D L+ +LE ++KKV ++GWY TG + D Sbjct: 46 KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKND 105 Query: 538 ILMHKAL 558 I +++ + Sbjct: 106 IAINELM 112
>RPN8_ASHGO (Q75F44) 26S proteasome regulatory subunit RPN8| Length = 326 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 5/137 (3%) Frame = +1 Query: 199 PLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRGRT 378 PLV+++V DHY R+ TP + R G ++G G T Sbjct: 12 PLVLLSVLDHYKRMN--------TP------------------DNKRCVGVLLGDNSGST 45 Query: 379 VEILNSFELVLD-----PVTGTLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTDIL 543 +++ NSF L + P L+ ++E ++ KK+ + ++GWY +G ++ +D+ Sbjct: 46 IKVTNSFALPFEEDEKNPDVWFLDHNYIENMNDMCKKINAKEKMIGWYHSGPKLRSSDLK 105 Query: 544 MHKALMDINESPVYLLL 594 ++ + LL+ Sbjct: 106 INGLFKKYTQGNSLLLI 122
>PSD7_DROME (P26270) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Proteasome subunit p39B) (Protein Mov34) Length = 337 Score = 43.9 bits (102), Expect = 4e-04 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Frame = +1 Query: 193 LHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRG 372 +HPLV+++V DH+ R+ GK RV G ++G R Sbjct: 12 VHPLVLLSVVDHFNRM-------------GKI------------GNQKRVVGVLLGCWRS 46 Query: 373 RTV-EILNSFELVLDP-----VTGTLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDT 534 + V ++ NSF + D L+ +LE ++KKV V+GWY TG + Sbjct: 47 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQN 106 Query: 535 DILMHK 552 DI +++ Sbjct: 107 DIAINE 112
>RPN8_CANGA (Q6FMD8) 26S proteasome regulatory subunit RPN8| Length = 329 Score = 42.0 bits (97), Expect = 0.001 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 5/137 (3%) Frame = +1 Query: 199 PLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRGRT 378 PLV+++V DHY R TP E R G ++G + T Sbjct: 12 PLVLLSVLDHYERTN--------TP------------------EGKRCVGVILGDSQTNT 45 Query: 379 VEILNSFELVLDPVTGT-----LERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTDIL 543 + + NSF L + L+ ++E E+ KK+ + ++GWY +G ++ +D+ Sbjct: 46 IRVTNSFALPFEEDEKNSDVWFLDHNYIESMNEMCKKINAKEKLIGWYHSGPKLRASDLK 105 Query: 544 MHKALMDINESPVYLLL 594 +++ + LL+ Sbjct: 106 INELFKKYTQGNPLLLI 122
>RPN8_YEAST (Q08723) 26S proteasome regulatory subunit RPN8| Length = 337 Score = 40.8 bits (94), Expect = 0.003 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 5/137 (3%) Frame = +1 Query: 199 PLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRGRT 378 PLV+++ DHY R + + E R G ++G T Sbjct: 11 PLVLLSALDHYERTQTK--------------------------ENKRCVGVILGDANSST 44 Query: 379 VEILNSFELVLDPVTGT-----LERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQDTDIL 543 + + NSF L + L+ ++E E+ KK+ + ++GWY +G ++ +D+ Sbjct: 45 IRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLK 104 Query: 544 MHKALMDINESPVYLLL 594 +++ ++ LL+ Sbjct: 105 INELFKKYTQNNPLLLI 121
>IF35_ARATH (O04202) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f) Length = 293 Score = 39.7 bits (91), Expect = 0.007 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 3/139 (2%) Frame = +1 Query: 181 LTFKLHPLVIVNVSDHYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIG 360 LT ++HPLVI NV D + R P RV G ++G Sbjct: 26 LTARIHPLVIFNVCDCFVR---------------------------RPDSAERVIGTLLG 58 Query: 361 -VQRGRTVEILNSFELVLDPVTG--TLERAFLEKKLELYKKVFPEFYVLGWYSTGSDVQD 531 + TV+I NS+ + + + ++ + L + KV + ++GWYSTG+ V Sbjct: 59 SILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNG 118 Query: 532 TDILMHKALMDINESPVYL 588 L+H +P++L Sbjct: 119 GSSLIHDFYAREVPNPIHL 137
>APS_RAT (Q9Z200) SH2 and PH domain-containing adapter protein APS (Adapter| protein with pleckstrin homology and Src homology 2 domains) Length = 621 Score = 32.3 bits (72), Expect = 1.1 Identities = 24/70 (34%), Positives = 33/70 (47%) Frame = +1 Query: 226 HYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRGRTVEILNSFEL 405 HY A A+ P +PS G +S S SSA + PPR + R R+ NS E Sbjct: 537 HYFSSLATATCPPTSPSNGAGASSSSGSSSSATSVPPRPAEGPLSA-RSRS----NSTEH 591 Query: 406 VLDPVTGTLE 435 +L+ +G E Sbjct: 592 LLEAASGATE 601
>APS_MOUSE (Q9JID9) SH2 and PH domain-containing adapter protein APS (Adapter| protein with pleckstrin homology and Src homology 2 domains) Length = 621 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = +1 Query: 226 HYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPR-VFGCVIGVQRGRTVEILNSFE 402 HY A A+ P +PS G +S S SSA + PPR G + R NS E Sbjct: 537 HYFSSLATATCPPASPSNGAGASSSSGSSSSATSLPPRPAEGPLSAHSRS------NSTE 590 Query: 403 LVLDPVTGTLE 435 +LD +G E Sbjct: 591 HLLDAASGATE 601
>CSN6B_BRAOL (P68357) COP9 signalosome complex subunit 6b (Signalosome subunit| 6b) (Fragments) Length = 58 Score = 31.6 bits (70), Expect = 1.8 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +1 Query: 550 KALMDINESPVYLLL 594 KALMDINESPVY+LL Sbjct: 16 KALMDINESPVYVLL 30 Score = 30.4 bits (67), Expect = 4.0 Identities = 11/16 (68%), Positives = 15/16 (93%) Frame = +1 Query: 190 KLHPLVIVNVSDHYTR 237 KLHPLV++N+SDH T+ Sbjct: 1 KLHPLVMLNISDHLTK 16
>RGS12_RAT (O08774) Regulator of G-protein signaling 12 (RGS12)| Length = 1387 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +1 Query: 250 ASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRGRT 378 A P SPG A ++ G++ P E P C+ VQ G T Sbjct: 1283 AHSPGSAHSPGSAHSTPGPPGTAQPGEKPTKPSCISTVQEGTT 1325
>BHLH3_RAT (O35779) Class B basic helix-loop-helix protein 3 (bHLHB3)| (Enhancer-of-split and hairy-related protein 1) (SHARP-1) Length = 410 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/48 (39%), Positives = 24/48 (50%) Frame = +1 Query: 226 HYTRVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQR 369 H V Q P TP G +A CSA G++A + RV CV +QR Sbjct: 165 HLHAVATQLLTPQVTPGRGPGRAPCSA-GAAAASGSERVARCVPVIQR 211
>FBX41_MOUSE (Q6NS60) F-box only protein 41| Length = 872 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 241 KAQASFPAETPSPGKAQASCSAEGSSAPAEP 333 K+ AS TP PG CS S++PA P Sbjct: 158 KSVASSACSTPPPGPGPGPCSGPSSASPASP 188
>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1120 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +1 Query: 382 EILNSFELVLDPVTGTLERAFLEKKLELYKKVFPEFYV 495 E+L+SF +++DP TG LE F K YK FP + V Sbjct: 36 EVLDSFPIIVDP-TGKLELQFFGKD---YKLKFPRYSV 69
>VATA_CHLPN (Q9Z993) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type| ATPase subunit A) Length = 591 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = +1 Query: 268 TPSPGKAQASCSAEGSSAPAEPPRVFGCVIGVQRGRTVEILNSFELVLDPVTG 426 TP P A + S A V C G + G VE+L F ++DP TG Sbjct: 240 TPGPFGAGKTVLQHHLSKYAAVDIVILCACGERAGEVVEVLQEFPHLIDPHTG 292
>APS_HUMAN (O14492) SH2 and PH domain-containing adapter protein APS (Adapter| protein with pleckstrin homology and Src homology 2 domains) Length = 632 Score = 29.6 bits (65), Expect = 6.9 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Frame = +1 Query: 226 HYTRVKAQASFPAETPSPGKAQASCSAEGSSA---PAEPPRVFGCVIGVQRGRTVEILNS 396 HY A A+ P +PS +S SA SSA PA P V G + R NS Sbjct: 545 HYFSSLAAAACPPASPSDAAGASSSSASSSSAASGPAPPRPVEGQLSARSRS------NS 598 Query: 397 FELVLDPVTGT 429 E +L+ V T Sbjct: 599 AERLLEAVAAT 609
>SUVR1_ARATH (Q946J2) Histone-lysine N-methyltransferase SUVR1 (EC 2.1.1.43)| (Suppressor of variegation 3-9-related protein 1) (Su(var)3-9-related protein 1) (Protein SET DOMAIN GROUP 13) Length = 630 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/30 (53%), Positives = 18/30 (60%) Frame = +1 Query: 415 PVTGTLERAFLEKKLELYKKVFPEFYVLGW 504 P L RA EK L+ YK V PEF VLG+ Sbjct: 211 PSMEDLRRAMEEKCLKSYKIVHPEFSVLGF 240
>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) (Protein oracle) Length = 723 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +1 Query: 235 RVKAQASFPAETPSPGKAQASCSAEGSSAPAEPPRV 342 R +A A PA SP + + +EG +APA PRV Sbjct: 358 RPQASAYSPAAAASPAPSAHTSYSEGPAAPAPKPRV 393 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,664,460 Number of Sequences: 219361 Number of extensions: 858650 Number of successful extensions: 3877 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3848 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
