ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart43g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KING1_ARATH (Q8LBB2) SNF1-related protein kinase regulatory gamm... 154 2e-37
2CRY1_ARATH (Q43125) Cryptochrome-1 (Blue light photoreceptor) 30 4.0
3LIRB4_MOUSE (Q64281) Leukocyte immunoglobulin-like receptor subf... 29 8.9

>KING1_ARATH (Q8LBB2) SNF1-related protein kinase regulatory gamma subunit 1|
           (AKIN gamma1) (AKING1)
          Length = 424

 Score =  154 bits (389), Expect = 2e-37
 Identities = 73/104 (70%), Positives = 89/104 (85%)
 Frame = +1

Query: 268 SPEAEIGHRVEDLWEVAQPQLSPSEKLNSCFEDIPVAAFPRNHPSQVIEIPSDASLADTV 447
           SPEA++G RVEDLW+  +PQLSP+EKLN+CFE IPV+AFP +  SQ IEI SD SLA+ V
Sbjct: 23  SPEAKLGMRVEDLWDEQKPQLSPNEKLNACFESIPVSAFPLSSDSQDIEIRSDTSLAEAV 82

Query: 448 ETLSKNKILSAPIRNVDAPEDATWIDKYIGIVEFAGIAMWLLHQ 579
           +TLSK K+LSAP+ +VDAPEDA+WID+YIGIVEF GI +WLLHQ
Sbjct: 83  QTLSKFKVLSAPVVDVDAPEDASWIDRYIGIVEFPGIVVWLLHQ 126



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>CRY1_ARATH (Q43125) Cryptochrome-1 (Blue light photoreceptor)|
          Length = 681

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 511 HPLEHRRFLWVHSKFYFWIMSQQYQQGW 428
           HP  H R L  H KF+ W + + Y + W
Sbjct: 307 HPYSHERPLLGHLKFFPWAVDENYFKAW 334



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>LIRB4_MOUSE (Q64281) Leukocyte immunoglobulin-like receptor subfamily B member|
           4 precursor (Mast cell surface glycoprotein Gp49B)
          Length = 335

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 555 TSKFHNTDVFVYPSSILWS-IDVSYGCTQNFIFG 457
           T  + N  + VYPSS + S + +S+ C+ + +FG
Sbjct: 118 TGAYENPSLSVYPSSNVTSGVSISFSCSSSIVFG 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,276,978
Number of Sequences: 219361
Number of extensions: 1116398
Number of successful extensions: 3831
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3831
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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