>TMED3_HUMAN (Q9Y3Q3) Transmembrane emp24 domain-containing protein 3 precursor|
           (Membrane protein p24B)
          Length = 217

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
 Frame = +3

Query: 297 ECIHEFVPYEGDSVTGNFVVVDHDIFWSSDHPGIDLTVTSPGGNTVYTMKGKSGDEFEFK 476
           +C HE V  +G   + ++ V+      +  H  +D  V  P GNT+Y    K  D F ++
Sbjct: 39  QCFHEEVE-QGVKFSLDYQVI------TGGHYDVDCYVEDPQGNTIYRETKKQYDSFTYR 91

Query: 477 APRGGMYKFCFHNPYG--APETVSFYIHVGHIP 569
           A   G+Y+FCF N +   + +TV F   VG  P
Sbjct: 92  AEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEP 124

>TMED3_MOUSE (Q78IS1) Transmembrane emp24 domain-containing protein 3 precursor|
          Length = 221

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +3

Query: 297 ECIHEFVPYEGDSVTGNFVVVDHDIFWSSDHPGIDLTVTSPGGNTVYTMKGKSGDEFEFK 476
           +C HE V  +G   + ++ V+      +  H  +D  V  P GN +Y    K  D F +K
Sbjct: 43  QCFHEEVE-QGVKFSLDYQVI------TGGHYDVDCYVEDPRGNVIYRETKKQYDSFTYK 95

Query: 477 APRGGMYKFCFHNPYG--APETVSFYIHVGHIP 569
               G+Y+FCF N +   + +TV F   VG  P
Sbjct: 96  TEAKGVYRFCFSNEFSTFSHKTVYFDFQVGDEP 128

>TMED7_HUMAN (Q9Y3B3) Transmembrane emp24 domain-containing protein 7 precursor|
          Length = 224

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +3

Query: 297 ECIHEFVPYEGDSVTGNFVVVDHDIFWSSDHPGIDLTVTSPGGNTVYTMKGKSGDEFEFK 476
           +C +E +  +G   T  F V+      +  H  +D  +  P G  +Y    K  D F F 
Sbjct: 47  QCFYEDIA-QGTKCTLEFQVI------TGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFT 99

Query: 477 APRGGMYKFCFHNPYG--APETVSFYIHVGHIP 569
           A + G YKFCF N +     +TV F   VG  P
Sbjct: 100 ASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDP 132

>TMED3_RAT (Q6AY25) Transmembrane emp24 domain-containing protein 3 precursor|
          Length = 221

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +3

Query: 297 ECIHEFVPYEGDSVTGNFVVVDHDIFWSSDHPGIDLTVTSPGGNTVYTMKGKSGDEFEFK 476
           +C HE V  +G   + ++ V+      +  H  +D  V  P GN +Y    K  D F +K
Sbjct: 43  QCFHEEVE-QGVKFSLDYQVI------TGGHYDVDCYVEDPMGNIIYRETKKQYDSFTYK 95

Query: 477 APRGGMYKFCFHNPYG--APETVSFYIHVGHIP 569
               G+Y+FCF N +   + +TV F   VG  P
Sbjct: 96  TEVKGVYRFCFSNEFSTFSHKTVYFDFQVGDEP 128

>TMED2_RAT (Q63524) Transmembrane emp24 domain trafficking protein 2 precursor|
           (Membrane protein p24A) (RNP21.4)
          Length = 201

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 396 IDLTVTSPGGNTVYTMKGKSGDEFEFKAPRGGMYKFCFHNPYG--APETVSFYIHVGHIP 569
           ID+ +T P    +Y    +S  ++ F A   G YKFCF N      P+ V F I +G  P
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

>TMED2_MOUSE (Q9R0Q3) Transmembrane emp24 domain trafficking protein 2 precursor|
           (Membrane protein p24A) (Sid 394)
          Length = 201

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 396 IDLTVTSPGGNTVYTMKGKSGDEFEFKAPRGGMYKFCFHNPYG--APETVSFYIHVGHIP 569
           ID+ +T P    +Y    +S  ++ F A   G YKFCF N      P+ V F I +G  P
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

>TMED2_HUMAN (Q15363) Transmembrane emp24 domain trafficking protein 2 precursor|
           (Membrane protein p24A)
          Length = 201

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 396 IDLTVTSPGGNTVYTMKGKSGDEFEFKAPRGGMYKFCFHNPYG--APETVSFYIHVGHIP 569
           ID+ +T P    +Y    +S  ++ F A   G YKFCF N      P+ V F I +G  P
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

>TMED2_CRIGR (P49020) Transmembrane emp24 domain trafficking protein 2 precursor|
           (COPI-coated vesicle membrane protein p24) (Fragment)
          Length = 196

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 396 IDLTVTSPGGNTVYTMKGKSGDEFEFKAPRGGMYKFCFHNPYG--APETVSFYIHVGHIP 569
           ID+ +T P    +Y    +S  ++ F A   G YKFCF N      P+ V F I +G  P
Sbjct: 52  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 111

>ERP2_YEAST (P39704) Protein ERP2 precursor|
          Length = 215

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +3

Query: 276 SVTVTDTECIHEFVPYEGDSVTGNFVVVDHDIFWSSDHPGIDLTVTSPGGNTVYTMKGKS 455
           S+     EC++  +  E DS+   + V+    F       ID  +T+P G+ + + K K 
Sbjct: 35  SLPAFSKECLYYDMVTEDDSLAVGYQVLTGGNF------EIDFDITAPDGSVITSEKQKK 88

Query: 456 GDEFEFKAPRGGMYKFCFHNPYG 524
             +F  K+   G Y FCF N YG
Sbjct: 89  YSDFLLKSFGVGKYTFCFSNNYG 111

>SEL9_CAEEL (O17528) Suppressor/enhancer of lin-12 protein 9 precursor|
          Length = 203

 Score = 37.0 bits (84), Expect = 0.041
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 396 IDLTVTSPGGNTVYTMKGKSGDEFEFKAPRGGMYKFCFHNPYG--APETVSFYIHV 557
           ID+ +T P    +Y  + +S  +F F A   G+Y +CF N      P+ V F + +
Sbjct: 55  IDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEI 110

>ERP4_YEAST (Q12450) Protein ERP4 precursor|
          Length = 207

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 396 IDLTVTSPGGNTVYTMKGKSGDEFEFKAPRGGMYKFCFHNPYG 524
           ID  +T+P G+ + T + K   +F  K+   G Y FC  N YG
Sbjct: 64  IDFDITAPDGSVIVTERQKKHSDFLLKSFGIGKYTFCLSNNYG 106

>GPI8_YEAST (P49018) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI|
           transamidase)
          Length = 411

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 315 VPYEGDSVT-GNFVVVDHDIFWSSDHPGIDLTVTSPGGNTVYTMKGKSGDEF 467
           V Y G  VT  NF+ +  D  W+ DHP     +T    N    M G  GD+F
Sbjct: 112 VDYRGYEVTVENFIRLLTDR-WTEDHPKSKRLLTDENSNIFIYMTGHGGDDF 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,242,358
Number of Sequences: 219361
Number of extensions: 1024490
Number of successful extensions: 2921
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2921
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)