ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart43f09 |
|---|---|
| Clone Library Name | barley_pub |
>AMO_LENCU (P49252) Amine oxidase [copper-containing] precursor (EC 1.4.3.6)| (Fragment) Length = 667 Score = 114 bits (285), Expect = 2e-25 Identities = 55/143 (38%), Positives = 91/143 (63%) Frame = +1 Query: 130 HHPHPFDPLSPAELTAVRDAVLASPLVPARPLTFHYVGLDEPDKPDVLFYAYGNSTSSSR 309 H HP DP++ E AV+ V + L FHY+G+D+P+K VL Y TS + Sbjct: 23 HTQHPLDPITKEEFLAVQTIVQNKYPISNNKLAFHYIGVDDPEKDLVLKY----ETSPTL 78 Query: 310 AALPRRAFVIARAGGESHELRVDVTNAAAPSVLAHAIHHGAGFPILTLEEQFAAVALPPA 489 ++PR+ FV+A ++HE+ +D+T S+++ IH+G GFP+L+ EQF A+ LP Sbjct: 79 ISIPRKIFVVAIINSQTHEILIDLT---IKSIVSDNIHNGYGFPVLSAAEQFLAIDLPLK 135 Query: 490 HPPFIESVRRRGVDMADVLCAAF 558 +PPFI SV +RG+++++++C++F Sbjct: 136 YPPFIASVNKRGLNISEIVCSSF 158
>AMO_PEA (Q43077) Amine oxidase [copper-containing] precursor (EC 1.4.3.6)| Length = 674 Score = 113 bits (283), Expect = 3e-25 Identities = 55/143 (38%), Positives = 91/143 (63%) Frame = +1 Query: 130 HHPHPFDPLSPAELTAVRDAVLASPLVPARPLTFHYVGLDEPDKPDVLFYAYGNSTSSSR 309 H HP DPL+ E AV+ V + L FHY+GLD+P+K VL Y T + Sbjct: 30 HVQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRY----ETHPTL 85 Query: 310 AALPRRAFVIARAGGESHELRVDVTNAAAPSVLAHAIHHGAGFPILTLEEQFAAVALPPA 489 ++PR+ FV+A ++HE+ + N S+++ IH+G GFPIL+++EQ A+ LP Sbjct: 86 VSIPRKIFVVAIINSQTHEILI---NLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLK 142 Query: 490 HPPFIESVRRRGVDMADVLCAAF 558 +PPFI+SV++RG+++++++C++F Sbjct: 143 YPPFIDSVKKRGLNLSEIVCSSF 165
>AMO2_ARTS1 (Q07123) Copper methylamine oxidase precursor (EC 1.4.3.6) (MAOXII)| Length = 648 Score = 34.3 bits (77), Expect = 0.25 Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 2/139 (1%) Frame = +1 Query: 139 HPFDPLSPAELTAVRDAVLASPLVPARPLTFHYVGLDEPDKPDVLFYAYGNSTSSSRAAL 318 HP DPLS E+ A A+L A F V L EP K D+ + A Sbjct: 15 HPLDPLSRVEI-ARAVAILKEGPAAAESFRFISVELREPSKDDL--------RAGVAVAR 65 Query: 319 PRRAFVIARAGGESHELRVDVTNAAAPS--VLAHAIHHGAGFPILTLEEQFAAVALPPAH 492 A ++ RA S E VD+ S +LA I P L+E Sbjct: 66 EADAVLVDRAQARSFEAVVDLEAGTVDSWKLLAENIQ-----PPFMLDEFAECEDACRKD 120 Query: 493 PPFIESVRRRGVDMADVLC 549 P I ++ +RG+ D++C Sbjct: 121 PEVIAALAKRGLTNLDLVC 139
>AMO1_ARTS1 (Q07121) Copper amine oxidase precursor (EC 1.4.3.6) (MAOXI)| Length = 648 Score = 34.3 bits (77), Expect = 0.25 Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 2/139 (1%) Frame = +1 Query: 139 HPFDPLSPAELTAVRDAVLASPLVPARPLTFHYVGLDEPDKPDVLFYAYGNSTSSSRAAL 318 HP DPLS E+ A A+L A F V L EP K D+ + A Sbjct: 15 HPLDPLSRVEI-ARAVAILKEGPAAAESFRFISVELREPSKDDL--------RAGVAVAR 65 Query: 319 PRRAFVIARAGGESHELRVDVTNAAAPS--VLAHAIHHGAGFPILTLEEQFAAVALPPAH 492 A ++ RA S E VD+ S +LA I P L+E Sbjct: 66 EADAVLVDRAQARSFEAVVDLEAGTVDSWKLLAENIQ-----PPFMLDEFAECEDACRKD 120 Query: 493 PPFIESVRRRGVDMADVLC 549 P I ++ +RG+ D++C Sbjct: 121 PEVIAALAKRGLTNLDLVC 139
>AMO_KLEAE (P49250) Copper amine oxidase precursor (EC 1.4.3.6) (Monamine| oxidase) (Tyramine oxidase) Length = 755 Score = 34.3 bits (77), Expect = 0.25 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = +1 Query: 136 PHPFDPLSPAELTAVRDAVLASPLVPARPLT-FHYVGLDEPDKPDVLFYAYGNSTSSSRA 312 PHP + LS AE++ V A+P +P T F + L EPDK V +A + + Sbjct: 123 PHPLNSLSAAEISKAVTIVKAAP--EFQPNTRFTEISLHEPDKAAVWAFALQGTPVDA-- 178 Query: 313 ALPRRAFVIARAGGESHELRVDVTN 387 PR A V+ G E VD+ N Sbjct: 179 --PRTADVVMLDGKHVIEAVVDLQN 201
>AMO_PICAN (P12807) Peroxisomal copper amine oxidase (EC 1.4.3.6) (Methylamine| oxidase) Length = 692 Score = 31.2 bits (69), Expect = 2.1 Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 3/140 (2%) Frame = +1 Query: 139 HPFDPLSPAELTAVRDAVLASPLVPARPLTFHYVGLDEPDKPDVLFYAYGNSTSSSRAAL 318 HP DPLS AE+ A + V + ++F+ V L EP + AY Sbjct: 23 HPLDPLSTAEIKAATNTV--KSYFAGKKISFNTVTLREPARK-----AYIQWKEQGGPLP 75 Query: 319 PRRAFVIARAGGESHELRVDVTNAAAPSVLAHAIHHGAGFPILTLEEQFAAVALPPAHPP 498 PR A+ + G+ V A+ + A+ PILT+E+ + + P Sbjct: 76 PRLAYYVILEAGKPGVKEGLVDLASLSVIETRALE--TVQPILTVEDLCSTEEVIRNDPA 133 Query: 499 FIESVRRRGV---DMADVLC 549 IE G+ +M V C Sbjct: 134 VIEQCVLSGIPANEMHKVYC 153
>PLCL4_HUMAN (O75038) 1-phosphatidylinositol-4,5-bisphosphate| phosphodiesterase-like 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C-like 4) (Phospholipase C-like 4) (Fragment) Length = 1182 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/70 (30%), Positives = 30/70 (42%) Frame = -1 Query: 560 GNAAQRTSAMSTPRRRTDSMNGGCAGGSATAANCSSRVRIGKPAPWWMA*ARTDGAAALV 381 G A+++ + PR R DS+ C G A SR P W + G + + Sbjct: 1070 GPASRQAAIRQQPRARADSLGAPCCGLDPHAIPGRSREAPKGPGAW----RQGPGGSGSM 1125 Query: 380 TSTRSSWDSP 351 +S SS DSP Sbjct: 1126 SSDSSSPDSP 1135
>PEO1_CHICK (Q5ZIW1) Twinkle protein, mitochondrial precursor (EC 3.6.1.-)| (Progressive external ophthalmoplegia 1 protein homolog) Length = 669 Score = 30.0 bits (66), Expect = 4.6 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +1 Query: 409 AHAIHHGAGFPILTLEEQFAAVALPPAHPPFIESVRRRGVDMADVL 546 A A+H G P L L A LPPA P++E RR + + D L Sbjct: 275 ALALHQATGVPCLALPR--GATILPPALLPYLEQFRRVTLWLGDDL 318 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,332,808 Number of Sequences: 219361 Number of extensions: 810786 Number of successful extensions: 3407 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3287 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3401 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
