ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart43d02 |
|---|---|
| Clone Library Name | barley_pub |
>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor| Length = 254 Score = 60.8 bits (146), Expect = 3e-09 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 2/98 (2%) Frame = +3 Query: 213 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 392 N+T +L AG + F+ + ST QAN ++ G T+F P D+AF + K L++L Sbjct: 46 NLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNL 105 Query: 393 SQQDQVTLVQAHIVPTFYSMESFE--TASNPVRTQASG 500 ++ LV H +P +YS+ F+ + S PV T A G Sbjct: 106 TKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGG 143
>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor| (AtAGP8) Length = 420 Score = 55.5 bits (132), Expect = 1e-07 Identities = 41/123 (33%), Positives = 62/123 (50%) Frame = +3 Query: 201 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 380 A+ N+T +LEKAG T F L+ S+ L + + G TVFAP+D AF + Sbjct: 185 ASLSNITGLLEKAGCKT-FANLLVSSGV---LKTYESAVEKGLTVFAPSDEAFKAEGVPD 240 Query: 381 LNSLSQQDQVTLVQAHIVPTFYSMESFETASNPVRTQASGTDGPCTXHVTATSNSAVNVS 560 L L+Q + V+L++ H + + S +T N + T A+ G T+TS V + Sbjct: 241 LTKLTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAGKFDL-TTSTSGDEVILH 299 Query: 561 TGV 569 TGV Sbjct: 300 TGV 302
>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor| Length = 422 Score = 53.1 bits (126), Expect = 6e-07 Identities = 39/123 (31%), Positives = 62/123 (50%) Frame = +3 Query: 201 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 380 A N+T +LEKAG T F L+ S+ + + + G TVFAP+D AF + Sbjct: 186 AGVSNITGLLEKAGCKT-FANLLVSSGV---IKTFESTVEKGLTVFAPSDEAFKARGVPD 241 Query: 381 LNSLSQQDQVTLVQAHIVPTFYSMESFETASNPVRTQASGTDGPCTXHVTATSNSAVNVS 560 L +L+Q + V+L++ H + + S +T + + T A+ G T+TS V + Sbjct: 242 LTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAGKYDL-TTSTSGDEVILH 300 Query: 561 TGV 569 TGV Sbjct: 301 TGV 303
>Y1483_SYNY3 (P74615) Hypothetical protein sll1483 precursor| Length = 180 Score = 45.4 bits (106), Expect = 1e-04 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 8/133 (6%) Frame = +3 Query: 201 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 380 AA + ++E A F L+A+ + + A + E FTVFAPT++AF +L GT Sbjct: 40 AATDSAMTIVEVAAGNETFSTLVAAVKAADLVEALSAEGP--FTVFAPTNDAFAALPAGT 97 Query: 381 LNSL----SQQDQVTLVQAHIVP---TFYSMESFETASNPVRTQA-SGTDGPCTXHVTAT 536 + SL ++ V ++ H+VP T ++S E AS DG + Sbjct: 98 VESLLLPENKDKLVKILTYHVVPGKITAAQVQSGEVASLAGEALTFKVKDGKVKVNKATV 157 Query: 537 SNSAVNVSTGVVH 575 ++ V+ S GV+H Sbjct: 158 ISADVDASNGVIH 170
>STAB2_HUMAN (Q8WWQ8) Stabilin-2 precursor (FEEL-2 protein) (Fasciclin EGF-like| laminin-type EGF-like and link domain-containing scavenger receptor 1) (FAS1 EGF-like and X-link domain-containing adhesion molecule 2) (Hyaluronan receptor for endocytosis) [ Length = 2551 Score = 40.8 bits (94), Expect = 0.003 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 14/129 (10%) Frame = +3 Query: 243 QYTKFIRLMASTQQDTQLNAQANESDTG--FTVFAPTDNAFNSLKPGTLNSL----SQQD 404 +Y+KF L+ ++T L +E G +T+F P + A N++K GTL+ L + Sbjct: 527 RYSKFRSLL----EETNLGHALDEDGVGGPYTIFVPNNEALNNMKDGTLDYLLSPEGSRK 582 Query: 405 QVTLVQAHIVPTFYSMESFETASNP-VRTQA-------SGTDGPCTXHVTATSNSAVNVS 560 + LV+ HIVP F +E S P +R+ A + +G + A + Sbjct: 583 LLELVRYHIVP-FTQLEVATLISTPHIRSMANQLIQFNTTDNGQILANDVAMEEIEITAK 641 Query: 561 TGVVHTTVG 587 G ++T G Sbjct: 642 NGRIYTLTG 650
>YH35_SYNP2 (O33752) Hypothetical protein sll1735 homolog| Length = 133 Score = 39.3 bits (90), Expect = 0.009 Identities = 22/48 (45%), Positives = 28/48 (58%) Frame = +3 Query: 255 FIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSLSQ 398 F L+A+ Q + A E D FTVFAP D+AF L PGT+ +L Q Sbjct: 14 FSTLVAAVQAAGLVETLAGEGD--FTVFAPNDDAFAKLPPGTIQTLVQ 59
>Y1735_SYNY3 (P73392) Hypothetical protein sll1735| Length = 133 Score = 36.6 bits (83), Expect = 0.055 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = +3 Query: 312 ESDTGFTVFAPTDNAFNSLKPGTLNSLSQ 398 +S FTVFAPTD AF L PGT+ +L Q Sbjct: 31 QSPGPFTVFAPTDTAFAKLPPGTITTLVQ 59
>PAM1_YEAST (P37304) Protein PAM1| Length = 830 Score = 36.6 bits (83), Expect = 0.055 Identities = 26/75 (34%), Positives = 32/75 (42%) Frame = +3 Query: 339 APTDNAFNSLKPGTLNSLSQQDQVTLVQAHIVPTFYSMESFETASNPVRTQASGTDGPCT 518 AP N NS P L SLSQ + Q +I +F T+ NP GT T Sbjct: 733 APCVNQLNSDSPPQLQSLSQNGTSKVPQINITQPSPIQTNFATSDNPAAVIKLGTPSEDT 792 Query: 519 XHVTATSNSAVNVST 563 AT+N N+ST Sbjct: 793 VSAAATAN---NIST 804
>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor| Length = 424 Score = 35.4 bits (80), Expect = 0.12 Identities = 23/73 (31%), Positives = 35/73 (47%) Frame = +3 Query: 324 GFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQAHIVPTFYSMESFETASNPVRTQASGT 503 G TVF P D+A P N L+ + + VPT+YSM ++ + P+ T A T Sbjct: 220 GMTVFCPGDDAMKGFLPKYKN-LTAPKKEAFLDFLAVPTYYSMAMLKSNNGPMNTLA--T 276 Query: 504 DGPCTXHVTATSN 542 DG +T ++ Sbjct: 277 DGANKFELTVQND 289
>VPS33_YEAST (P20795) Vacuolar protein sorting 33 (SLP1 protein)| Length = 691 Score = 34.3 bits (77), Expect = 0.27 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Frame = +3 Query: 378 TLNSLSQQDQVTLVQAHIVPTFYSMESFE--TASNPVR 485 TLN +SQ D+V +VQ ++P S+ +F+ T S PVR Sbjct: 21 TLNEISQNDEVLVVQPSVLPVLNSLLTFQDLTQSTPVR 58
>STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for endocytosis)| [Contains: 175 kDa stabilin-2 (175 kDa hyaluronan receptor for endocytosis)] (Fragment) Length = 1431 Score = 34.3 bits (77), Expect = 0.27 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Frame = +3 Query: 213 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANES-DTGFTVFAPTDNAFNSLKPGTLNS 389 N+T V G YTKF +L+ QD+ L + +S T TVF PTD A +L P + Sbjct: 607 NLTTVAANHG-YTKFSKLI----QDSGLLSVITDSIHTPVTVFWPTDKALEALPPEQQDF 661 Query: 390 LSQQDQVTLVQAHI 431 L QD +++++ Sbjct: 662 LFNQDNKDKLKSYL 675
>HA34_BRELC (Q99074) HAM34 protein| Length = 173 Score = 34.3 bits (77), Expect = 0.27 Identities = 26/105 (24%), Positives = 43/105 (40%) Frame = +3 Query: 270 ASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQAHIVPTFYS 449 AST+Q T +A + G T P D + P + + + + Sbjct: 55 ASTEQTTTAGPEAAGATNGTTTTPPADGTQTATAPLDATATEESSASGEMTPTVGTDTSD 114 Query: 450 MESFETASNPVRTQASGTDGPCTXHVTATSNSAVNVSTGVVHTTV 584 S TA+ P + S T G T + +S+SA + ++G HTT+ Sbjct: 115 QVSDSTAAGPSTPEGSMT-GTSTPKASDSSSSATDTTSGASHTTM 158
>TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau| Length = 775 Score = 33.9 bits (76), Expect = 0.36 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 15/85 (17%) Frame = +2 Query: 275 DAAGHAAER--AGQRVGHGLHGVRPHRQRLQQPQAGHPQLAL-------------AAGPG 409 +AAGH + +G+ V G G R Q +G P L GP Sbjct: 116 EAAGHVTQEPESGKVVREGFLGEPGPRSXSHQLASGMPGAPLLPEGPREATRQPSGTGPE 175 Query: 410 DARAGAHRPHLLLHGVLRDRQQPRP 484 D G H P LL H +L D Q P Sbjct: 176 DTEGGRHAPELLKHQLLGDLHQEGP 200
>BGH3_RABIT (Q95215) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) (Kerato-epithelin) (RGD-containing collagen-associated protein) (RGD-CAP) Length = 683 Score = 33.5 bits (75), Expect = 0.47 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +3 Query: 327 FTVFAPTDNAFNSLKPGTLNSL 392 +TVFAPT+ AF +L PG LN L Sbjct: 537 YTVFAPTNEAFQALPPGELNKL 558 Score = 31.6 bits (70), Expect = 1.8 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 8/129 (6%) Frame = +3 Query: 213 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 392 N+ ++E + +A++ +T L ESD FT+ APT+ A + TLN + Sbjct: 242 NIQQIIEIEDTFETLRAAVAASGLNTLL-----ESDGQFTLLAPTNEAKEKIPTETLNRI 296 Query: 393 SQQDQV--TLVQAHIVPTFYSMESFETASNPVRTQASGTDGPCTXHV------TATSNSA 548 + L+ HI+ + E+ + +A+ + C+ + SN Sbjct: 297 LGDPEALRDLLNNHILKSAMCAEAIVAGLSMETLEATTLEVGCSGDMLTINGKAIISNKD 356 Query: 549 VNVSTGVVH 575 V + GV+H Sbjct: 357 VLATNGVIH 365
>MP70_MYCTU (P0A668) Immunogenic protein MPT70 precursor| Length = 193 Score = 33.5 bits (75), Expect = 0.47 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Frame = +3 Query: 291 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 434 QLN Q N DT +TVFAPT+ AF+ L T++ L + +++ H+V Sbjct: 80 QLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVV 133
>MP70_MYCBO (P0A669) Immunogenic protein MPB70 precursor| Length = 193 Score = 33.5 bits (75), Expect = 0.47 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Frame = +3 Query: 291 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 434 QLN Q N DT +TVFAPT+ AF+ L T++ L + +++ H+V Sbjct: 80 QLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVV 133
>CROC_DROME (P32027) Fork head domain protein crocodile (FKH protein FD1)| Length = 508 Score = 33.5 bits (75), Expect = 0.47 Identities = 23/83 (27%), Positives = 33/83 (39%) Frame = +2 Query: 245 VHQVHPADGVDAAGHAAERAGQRVGHGLHGVRPHRQRLQQPQAGHPQLALAAGPGDARAG 424 +H VH A AA H A++ + V H H + P Q +GH ++ G A G Sbjct: 295 MHHVHHA----AAAHHAQQLQRHVAHVAHPLTPGGQGAGGQSSGHSPTTISTPHGPAHGG 350 Query: 425 AHRPHLLLHGVLRDRQQPRPHPG 493 + P +P PH G Sbjct: 351 WYTPE-------TPPSEPVPHNG 366
>POSTN_HUMAN (Q15063) Periostin precursor (PN) (Osteoblast-specific factor 2)| (OSF-2) Length = 836 Score = 33.1 bits (74), Expect = 0.61 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 9/95 (9%) Frame = +3 Query: 318 DTGFTVFAPTDNAFNSLKPGTLNSLSQQDQV---TLVQAHIVPTFYSMES------FETA 470 D FT+FAPT+ AF L G L + D+V L++ HI+ T ES FET Sbjct: 266 DGHFTLFAPTNEAFEKLPRGVLERI-MGDKVASEALMKYHILNTLQCSESIMGGAVFETL 324 Query: 471 SNPVRTQASGTDGPCTXHVTATSNSAVNVSTGVVH 575 D + + + + GV+H Sbjct: 325 EGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIH 359
>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2132 Score = 32.7 bits (73), Expect = 0.80 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 8/129 (6%) Frame = +3 Query: 219 TAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSLSQ 398 + +L +GQ + + T + L+ Q + GF VF+ T L GT++ + Sbjct: 1408 SGILFGSGQSSGITSVSGETSGISDLSGQPS----GFPVFSGTATRTPDLASGTISGSGE 1463 Query: 399 QDQVTLVQ---AHIVPTFYSME----SFETASNPV-RTQASGTDGPCTXHVTATSNSAVN 554 +T V + PT + E S E + P T+ SGT G T V+ S+ A++ Sbjct: 1464 SSGITFVDTSFVEVTPTTFREEEGLGSVELSGFPSGETELSGTSG--TVDVSEQSSGAID 1521 Query: 555 VSTGVVHTT 581 S+G+ T Sbjct: 1522 -SSGLTSPT 1529
>BGH3_MOUSE (P82198) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) Length = 683 Score = 32.0 bits (71), Expect = 1.4 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Frame = +3 Query: 213 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 392 N+ ++E + +A++ +T L E D FT+ APT+ AF + TLN + Sbjct: 242 NIQQIIEIEDTFETLRAAVAASGLNTVL-----EGDGQFTLLAPTNEAFEKIPAETLNRI 296 Query: 393 SQQDQV--TLVQAHIVPTFYSME------SFETASNPVRTQASGTDGPCTXHVTATSNSA 548 + L+ HI+ + E S ET D SN Sbjct: 297 LGDPEALRDLLNNHILKSAMCAEAIVAGMSMETLGGTTLEVGCSGDKLTINGKAVISNKD 356 Query: 549 VNVSTGVVH 575 + + GV+H Sbjct: 357 ILATNGVIH 365 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +3 Query: 210 PNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNS 389 P + V++ +F L+A+ Q + E +TVFAPT+ AF ++ P LN Sbjct: 500 PPMGTVMDVLKGDNRFSMLVAAIQSAGLMEILNREGV--YTVFAPTNEAFQAMPPEELNK 557 Query: 390 L--SQQDQVTLVQAHI 431 L + ++ +++ HI Sbjct: 558 LLANAKELTNILKYHI 573 Score = 29.3 bits (64), Expect = 8.8 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +3 Query: 312 ESDTGFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQA 425 E FT+FAP++ A++SL L+SL + L+ A Sbjct: 133 EGPGSFTIFAPSNEAWSSLPAEVLDSLVSNVNIELLNA 170
>POSTN_MOUSE (Q62009) Periostin precursor (PN) (Osteoblast-specific factor 2)| (OSF-2) Length = 838 Score = 31.2 bits (69), Expect = 2.3 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 10/96 (10%) Frame = +3 Query: 318 DTGFTVFAPTDNAFNSLKPGTLNSLSQQDQV---TLVQAHIVPTFYSMES------FET- 467 D FT+FAPT+ AF L G L + D+V L++ HI+ T E+ FET Sbjct: 268 DGHFTLFAPTNEAFEKLPRGVLERI-MGDKVASEALMKYHILNTLQCSEAITGGAVFETM 326 Query: 468 ASNPVRTQASGTDGPCTXHVTATSNSAVNVSTGVVH 575 N + G D + + + GV+H Sbjct: 327 EGNTIEIGCEG-DSISINGIKMVNKKDIVTKNGVIH 361
>MP70_MYCKA (Q49614) Immunogenic protein MPT70 analog precursor (Fragment)| Length = 121 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Frame = +3 Query: 291 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSL 392 +LN Q N DT +TVFAPTD AF+ L T+ L Sbjct: 78 RLNPQVNLVDTLNNGQYTVFAPTDPAFDKLPASTIVQL 115
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 31.2 bits (69), Expect = 2.3 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 4/101 (3%) Frame = +3 Query: 213 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 392 NVTA E G Y F RL+ L + S FT+ PTD+A +L P N L Sbjct: 1728 NVTAAAESFG-YKIFSRLLTVAGLLPMLQ---DASHRPFTMLWPTDSALQALPPDRKNWL 1783 Query: 393 SQQDQ----VTLVQAHIVPTFYSMESFETASNPVRTQASGT 503 +D +++ H++ ++ S +RT T Sbjct: 1784 FHEDHRDKLAAILRGHMIRNIEALASDLPNLGQLRTMHGNT 1824
>VID21_EMENI (Q5B4Q8) Chromatin modification-related protein vid21| Length = 1447 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +2 Query: 356 LQQPQAGHPQLALAAGPGDARAGAHRPHLL-LHGVLRDRQQPRPHP 490 +QQ A P +A+ A P +AR L +L+ RQQP HP Sbjct: 1149 MQQNNAPRPNMAMQASPDNARVIREANRLQEQQRILQSRQQPSQHP 1194
>CADN_DROME (O15943) Neural-cadherin precursor (Cadherin-N protein)| (DN-cadherin) Length = 3097 Score = 30.0 bits (66), Expect = 5.2 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 8/92 (8%) Frame = +3 Query: 330 TVFA--PTDNAFNSL--KPGTL--NSLSQQDQVTLVQAHIVPTFYSMESFETASNPVRTQ 491 T FA +NA L PG + +SLS +++LV H +S++ F+T +PV+ Sbjct: 40 TTFAGLSAENAARMLAGSPGDVEKSSLSHHSEMSLVLPHDTYPGFSIKKFKT--HPVKIN 97 Query: 492 ASGTDGPCTXHVTATSNSA--VNVSTGVVHTT 581 S G H+ T S + GVV TT Sbjct: 98 GSSHSGAAAYHMLDTDYSKYFTVLEDGVVMTT 129
>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) (Osteotesticular protein-tyrosine phosphatase) (OST-PTP) Length = 1711 Score = 30.0 bits (66), Expect = 5.2 Identities = 24/81 (29%), Positives = 33/81 (40%) Frame = +3 Query: 270 ASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQAHIVPTFYS 449 + + + QL A NES GF + LK L Q +TL A PT Sbjct: 76 SGSPEGQQLQAHTNES--GFEFHGLVPGSRYQLKLTVLRPCWQNVTITLT-ARTAPTVVR 132 Query: 450 MESFETASNPVRTQASGTDGP 512 +A +P R +AS +D P Sbjct: 133 GLQLHSAGSPARLEASWSDAP 153
>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]| Length = 2559 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/73 (30%), Positives = 34/73 (46%) Frame = +3 Query: 213 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 392 N+T V G YTKF +L+ Q L + T T+F PTD A +L + L Sbjct: 1750 NLTTVAANHG-YTKFSKLI---QDSGLLKVITDPMHTPVTLFWPTDKALQALPQEQQDFL 1805 Query: 393 SQQDQVTLVQAHI 431 +D ++A++ Sbjct: 1806 FNEDNKDKLKAYL 1818
>MP83_MYCTU (P0A670) Cell surface lipoprotein MPT83 precursor (Lipoprotein p23)| Length = 220 Score = 29.3 bits (64), Expect = 8.8 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Frame = +3 Query: 291 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 434 +LN N DT +TVFAPT+ AF+ L T++ L ++ +++ H++ Sbjct: 106 KLNPDVNLVDTLNGGEYTVFAPTNAAFDKLPAATIDQLKTDAKLLSSILTYHVI 159
>MP83_MYCBO (P0A671) Cell surface lipoprotein MPB83 precursor (Lipoprotein p23)| Length = 220 Score = 29.3 bits (64), Expect = 8.8 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%) Frame = +3 Query: 291 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 434 +LN N DT +TVFAPT+ AF+ L T++ L ++ +++ H++ Sbjct: 106 KLNPDVNLVDTLNGGEYTVFAPTNAAFDKLPAATIDQLKTDAKLLSSILTYHVI 159
>BGH3_HUMAN (Q15582) Transforming growth factor-beta-induced protein ig-h3| precursor (Beta ig-h3) (Kerato-epithelin) (RGD-containing collagen-associated protein) (RGD-CAP) Length = 683 Score = 29.3 bits (64), Expect = 8.8 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 8/129 (6%) Frame = +3 Query: 213 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 392 N+ ++E + +A++ +T L E + +T+ APT+ AF + TLN + Sbjct: 242 NIQQIIEIEDTFETLRAAVAASGLNTML-----EGNGQYTLLAPTNEAFEKIPSETLNRI 296 Query: 393 SQQDQV--TLVQAHIVPTFYSMESFETASNPVRTQASGTDGPCTXHV------TATSNSA 548 + L+ HI+ + E+ + + + + C+ + SN Sbjct: 297 LGDPEALRDLLNNHILKSAMCAEAIVAGLSVETLEGTTLEVGCSGDMLTINGKAIISNKD 356 Query: 549 VNVSTGVVH 575 + + GV+H Sbjct: 357 ILATNGVIH 365
>TAU_PANTR (Q5YCW1) Microtubule-associated protein tau| Length = 775 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +2 Query: 401 GPGDARAGAHRPHLLLHGVLRDRQQPRP 484 GP D G H P LL H +L D Q P Sbjct: 173 GPEDTEGGRHAPELLKHQLLGDLHQEGP 200
>TAU_GORGO (Q5YCW0) Microtubule-associated protein tau| Length = 775 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +2 Query: 401 GPGDARAGAHRPHLLLHGVLRDRQQPRP 484 GP D G H P LL H +L D Q P Sbjct: 173 GPEDTEGGRHAPELLKHQLLGDLHQEGP 200
>TAU_PONPY (Q5S6V2) Microtubule-associated protein tau| Length = 757 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +2 Query: 401 GPGDARAGAHRPHLLLHGVLRDRQQPRP 484 GP D G H P LL H +L D Q P Sbjct: 173 GPEDTEGGRHAPELLKHQLLGDLHQEGP 200
>TAU_HUMAN (P10636) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 757 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +2 Query: 401 GPGDARAGAHRPHLLLHGVLRDRQQPRP 484 GP D G H P LL H +L D Q P Sbjct: 173 GPEDTEGGRHAPELLKHQLLGDLHQEGP 200
>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)| (Scaffold attachment factor A) (SAF-A) (p120) (pp120) Length = 824 Score = 29.3 bits (64), Expect = 8.8 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = +2 Query: 266 DGVDAAGHAAERAGQRVGHGLHGVRPHRQRLQQPQAGHPQLALAAG 403 +G D G E AG GHG +P + QQPQ AAG Sbjct: 140 EGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKEAAG 185 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,481,910 Number of Sequences: 219361 Number of extensions: 628463 Number of successful extensions: 2651 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2528 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2640 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
