Clone Name | bart43d01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 369 bits (186), Expect = 6e-99 Identities = 341/392 (86%), Gaps = 3/392 (0%) Strand = Plus / Minus Query: 122 gccatggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtg 181 ||||||||||||||| ||||||||||||| ||||| |||| |||||| |||||||||||| Sbjct: 40967026 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 40966967 Query: 182 aacctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcc 241 |||||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 40966966 aacctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcg 40966907 Query: 242 cgccagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---g 298 || ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | Sbjct: 40966906 cggcagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccg 40966847 Query: 299 gtccggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccgag 358 |||||||| |||| |||||| || |||||| ||| ||||||| || |||||||||||| Sbjct: 40966846 ctccggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgag 40966787 Query: 359 cgcgccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctcc 418 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 40966786 cgcgccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctcc 40966727 Query: 419 ggcgcgcccgacggcgccgtgccggtcaagttcgtcgcctaccaggtccgcaagatcggg 478 ||||| |||||||||||||| || | |||||||||| |||||||||||||||||||| Sbjct: 40966726 ggcgcccccgacggcgccgtccccgccaagttcgtctcctaccaggtccgcaagatctcc 40966667 Query: 479 tccgggaagccccagggggtcctcaacttctc 510 ||||||||||| ||||| |||||||| ||||| Sbjct: 40966666 tccgggaagccacagggcgtcctcaatttctc 40966635
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 369 bits (186), Expect = 6e-99 Identities = 341/392 (86%), Gaps = 3/392 (0%) Strand = Plus / Minus Query: 122 gccatggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtg 181 ||||||||||||||| ||||||||||||| ||||| |||| |||||| |||||||||||| Sbjct: 3956 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 3897 Query: 182 aacctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcc 241 |||||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 3896 aacctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcg 3837 Query: 242 cgccagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---g 298 || ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | Sbjct: 3836 cggcagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccg 3777 Query: 299 gtccggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccgag 358 |||||||| |||| |||||| || |||||| ||| ||||||| || |||||||||||| Sbjct: 3776 ctccggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgag 3717 Query: 359 cgcgccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctcc 418 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 3716 cgcgccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctcc 3657 Query: 419 ggcgcgcccgacggcgccgtgccggtcaagttcgtcgcctaccaggtccgcaagatcggg 478 ||||| |||||||||||||| || | |||||||||| |||||||||||||||||||| Sbjct: 3656 ggcgcccccgacggcgccgtccccgccaagttcgtctcctaccaggtccgcaagatctcc 3597 Query: 479 tccgggaagccccagggggtcctcaacttctc 510 ||||||||||| ||||| |||||||| ||||| Sbjct: 3596 tccgggaagccacagggcgtcctcaatttctc 3565
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 369 bits (186), Expect = 6e-99 Identities = 341/392 (86%), Gaps = 3/392 (0%) Strand = Plus / Minus Query: 122 gccatggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtg 181 ||||||||||||||| ||||||||||||| ||||| |||| |||||| |||||||||||| Sbjct: 95451 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 95392 Query: 182 aacctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcc 241 |||||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 95391 aacctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcg 95332 Query: 242 cgccagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---g 298 || ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | Sbjct: 95331 cggcagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccg 95272 Query: 299 gtccggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccgag 358 |||||||| |||| |||||| || |||||| ||| ||||||| || |||||||||||| Sbjct: 95271 ctccggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgag 95212 Query: 359 cgcgccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctcc 418 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 95211 cgcgccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctcc 95152 Query: 419 ggcgcgcccgacggcgccgtgccggtcaagttcgtcgcctaccaggtccgcaagatcggg 478 ||||| |||||||||||||| || | |||||||||| |||||||||||||||||||| Sbjct: 95151 ggcgcccccgacggcgccgtccccgccaagttcgtctcctaccaggtccgcaagatctcc 95092 Query: 479 tccgggaagccccagggggtcctcaacttctc 510 ||||||||||| ||||| |||||||| ||||| Sbjct: 95091 tccgggaagccacagggcgtcctcaatttctc 95060
>dbj|AK100995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146J24, full insert sequence Length = 1371 Score = 369 bits (186), Expect = 6e-99 Identities = 341/392 (86%), Gaps = 3/392 (0%) Strand = Plus / Plus Query: 122 gccatggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtg 181 ||||||||||||||| ||||||||||||| ||||| |||| |||||| |||||||||||| Sbjct: 114 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 173 Query: 182 aacctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcc 241 |||||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 174 aacctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcg 233 Query: 242 cgccagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---g 298 || ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | Sbjct: 234 cggcagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccg 293 Query: 299 gtccggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccgag 358 |||||||| |||| |||||| || |||||| ||| ||||||| || |||||||||||| Sbjct: 294 ctccggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgag 353 Query: 359 cgcgccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctcc 418 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 354 cgcgccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctcc 413 Query: 419 ggcgcgcccgacggcgccgtgccggtcaagttcgtcgcctaccaggtccgcaagatcggg 478 ||||| |||||||||||||| || | |||||||||| |||||||||||||||||||| Sbjct: 414 ggcgcccccgacggcgccgtccccgccaagttcgtctcctaccaggtccgcaagatctcc 473 Query: 479 tccgggaagccccagggggtcctcaacttctc 510 ||||||||||| ||||| |||||||| ||||| Sbjct: 474 tccgggaagccacagggcgtcctcaatttctc 505
>ref|NM_190041.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1077 Score = 363 bits (183), Expect = 4e-97 Identities = 338/389 (86%), Gaps = 3/389 (0%) Strand = Plus / Plus Query: 125 atggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtgaac 184 |||||||||||| ||||||||||||| ||||| |||| |||||| ||||||||||||||| Sbjct: 1 atggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtgaac 60 Query: 185 ctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgc 244 ||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| || Sbjct: 61 ctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcgcgg 120 Query: 245 cagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---ggtc 301 ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | || Sbjct: 121 cagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccgctc 180 Query: 302 cggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccgagcgc 361 |||||| |||| |||||| || |||||| ||| ||||||| || ||||||||||||||| Sbjct: 181 cggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgagcgc 240 Query: 362 gccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 241 gccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctccggc 300 Query: 422 gcgcccgacggcgccgtgccggtcaagttcgtcgcctaccaggtccgcaagatcgggtcc 481 || |||||||||||||| || | |||||||||| |||||||||||||||||||| ||| Sbjct: 301 gcccccgacggcgccgtccccgccaagttcgtctcctaccaggtccgcaagatctcctcc 360 Query: 482 gggaagccccagggggtcctcaacttctc 510 |||||||| ||||| |||||||| ||||| Sbjct: 361 gggaagccacagggcgtcctcaatttctc 389
>dbj|AK120801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M12, full insert sequence Length = 1353 Score = 353 bits (178), Expect = 4e-94 Identities = 340/392 (86%), Gaps = 4/392 (1%) Strand = Plus / Plus Query: 122 gccatggcgcagagggcgctggagctgaccctgatatcgggcaaggacctcaaggacgtg 181 ||||||||||||||| ||||||||||||| ||||| |||| || ||| |||||||||||| Sbjct: 111 gccatggcgcagaggacgctggagctgacgctgatctcggcca-ggatctcaaggacgtg 169 Query: 182 aacctcttctcggccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcc 241 |||||| |||| |||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 170 aacctcctctccaagatggaggtctacgccgtcgtctcgctctccggcgaccgccgctcg 229 Query: 242 cgccagcgcgtcgccaccgaccgctccggcggccgcaacccgacctggaacgccac---g 298 || ||||| |||||||||||||| |||| |||||||||||| | ||||||||| | | Sbjct: 230 cggcagcggatcgccaccgaccgcgccggtggccgcaacccggcgtggaacgccgccccg 289 Query: 299 gtccggttcgccgtgccggccaacgccgcgggctccgtccacgtgctgctccgcgccgag 358 |||||||| |||| |||||| || |||||| ||| ||||||| || |||||||||||| Sbjct: 290 ctccggttcaccgtcccggcctccggcgcgggttccctccacgtcctcctccgcgccgag 349 Query: 359 cgcgccctcggcgaccgcgacgtcggcgaggtccacatcccgctctccgagctgctctcc 418 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 350 cgcgccctcggcgaccgcgacgtcggcgaggtccacatccccctctcggagctcctctcc 409 Query: 419 ggcgcgcccgacggcgccgtgccggtcaagttcgtcgcctaccaggtccgcaagatcggg 478 ||||| |||||||||||||| || | |||||||||| |||||||||||||||||||| Sbjct: 410 ggcgcccccgacggcgccgtccccgccaagttcgtctcctaccaggtccgcaagatctcc 469 Query: 479 tccgggaagccccagggggtcctcaacttctc 510 ||||||||||| ||||| |||||||| ||||| Sbjct: 470 tccgggaagccacagggcgtcctcaatttctc 501
>ref|XM_479452.1| Oryza sativa (japonica cultivar-group), mRNA Length = 699 Score = 115 bits (58), Expect = 1e-22 Identities = 167/200 (83%), Gaps = 5/200 (2%) Strand = Plus / Plus Query: 195 ccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcg 254 |||||||||||||||| |||||||| |||| ||| |||||| | |||||||| || || Sbjct: 71 ccatggaggtgtacgccgtcgtctccgtctccggcaacccgctcgcccgccagtgca-cg 129 Query: 255 c-caccgaccgctccggcggccgcaacccgacctggaacgccacggtccggttcgccgtg 313 | | |||||||| |||||||||||||||||| |||||||||||| ||| ||||||| Sbjct: 130 ctccccgaccgccacggcggccgcaacccgacgtggaacgccacgctccacctcgccgtc 189 Query: 314 ccggccaacgccgcgggctc---cgtccacgtgctgctccgcgccgagcgcgccctcggc 370 || ||| ||| ||||| | | ||||||| || |||||| ||||||||||||||||| Sbjct: 190 cccgccgccgcgccgggcgcgttcctccacgtcctcctccgcaccgagcgcgccctcggc 249 Query: 371 gaccgcgacgtcggcgaggt 390 |||||||||||||||||||| Sbjct: 250 gaccgcgacgtcggcgaggt 269
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 115 bits (58), Expect = 1e-22 Identities = 167/200 (83%), Gaps = 5/200 (2%) Strand = Plus / Plus Query: 195 ccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcg 254 |||||||||||||||| |||||||| |||| ||| |||||| | |||||||| || || Sbjct: 28286203 ccatggaggtgtacgccgtcgtctccgtctccggcaacccgctcgcccgccagtgca-cg 28286261 Query: 255 c-caccgaccgctccggcggccgcaacccgacctggaacgccacggtccggttcgccgtg 313 | | |||||||| |||||||||||||||||| |||||||||||| ||| ||||||| Sbjct: 28286262 ctccccgaccgccacggcggccgcaacccgacgtggaacgccacgctccacctcgccgtc 28286321 Query: 314 ccggccaacgccgcgggctc---cgtccacgtgctgctccgcgccgagcgcgccctcggc 370 || ||| ||| ||||| | | ||||||| || |||||| ||||||||||||||||| Sbjct: 28286322 cccgccgccgcgccgggcgcgttcctccacgtcctcctccgcaccgagcgcgccctcggc 28286381 Query: 371 gaccgcgacgtcggcgaggt 390 |||||||||||||||||||| Sbjct: 28286382 gaccgcgacgtcggcgaggt 28286401 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||||||||| ||||||||||||||||| | Sbjct: 28290848 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 28290907 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 28290908 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 28290947 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 28290785 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 28290829 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 caccgaccgctccggcggccgc 277 |||||||||||||||||||||| Sbjct: 28127375 caccgaccgctccggcggccgc 28127354 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 28290683 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 28290730 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ccacgtgctgctccgcgccg 356 |||||||||||||||||||| Sbjct: 24910380 ccacgtgctgctccgcgccg 24910399
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 115 bits (58), Expect = 1e-22 Identities = 167/200 (83%), Gaps = 5/200 (2%) Strand = Plus / Plus Query: 195 ccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcg 254 |||||||||||||||| |||||||| |||| ||| |||||| | |||||||| || || Sbjct: 141748 ccatggaggtgtacgccgtcgtctccgtctccggcaacccgctcgcccgccagtgca-cg 141806 Query: 255 c-caccgaccgctccggcggccgcaacccgacctggaacgccacggtccggttcgccgtg 313 | | |||||||| |||||||||||||||||| |||||||||||| ||| ||||||| Sbjct: 141807 ctccccgaccgccacggcggccgcaacccgacgtggaacgccacgctccacctcgccgtc 141866 Query: 314 ccggccaacgccgcgggctc---cgtccacgtgctgctccgcgccgagcgcgccctcggc 370 || ||| ||| ||||| | | ||||||| || |||||| ||||||||||||||||| Sbjct: 141867 cccgccgccgcgccgggcgcgttcctccacgtcctcctccgcaccgagcgcgccctcggc 141926 Query: 371 gaccgcgacgtcggcgaggt 390 |||||||||||||||||||| Sbjct: 141927 gaccgcgacgtcggcgaggt 141946 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||||||||| ||||||||||||||||| | Sbjct: 146393 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 146452 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 146453 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 146492 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 146330 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 146374 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 146228 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 146275
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 115 bits (58), Expect = 1e-22 Identities = 167/200 (83%), Gaps = 5/200 (2%) Strand = Plus / Plus Query: 195 ccatggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcg 254 |||||||||||||||| |||||||| |||| ||| |||||| | |||||||| || || Sbjct: 11766 ccatggaggtgtacgccgtcgtctccgtctccggcaacccgctcgcccgccagtgca-cg 11824 Query: 255 c-caccgaccgctccggcggccgcaacccgacctggaacgccacggtccggttcgccgtg 313 | | |||||||| |||||||||||||||||| |||||||||||| ||| ||||||| Sbjct: 11825 ctccccgaccgccacggcggccgcaacccgacgtggaacgccacgctccacctcgccgtc 11884 Query: 314 ccggccaacgccgcgggctc---cgtccacgtgctgctccgcgccgagcgcgccctcggc 370 || ||| ||| ||||| | | ||||||| || |||||| ||||||||||||||||| Sbjct: 11885 cccgccgccgcgccgggcgcgttcctccacgtcctcctccgcaccgagcgcgccctcggc 11944 Query: 371 gaccgcgacgtcggcgaggt 390 |||||||||||||||||||| Sbjct: 11945 gaccgcgacgtcggcgaggt 11964 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||||||||| ||||||||||||||||| | Sbjct: 16411 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 16470 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 16471 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 16510 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 16348 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 16392 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 16246 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 16293
>ref|XM_479453.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1249 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||||||||| ||||||||||||||||| | Sbjct: 287 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 346 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 347 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 386 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 224 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 268 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 122 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 169
>ref|XM_506555.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470D12.106 mRNA Length = 1259 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||||||||| ||||||||||||||||| | Sbjct: 294 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 353 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 354 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 393 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 231 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 275 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 129 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 176
>dbj|AK099020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119K22, full insert sequence Length = 1249 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||||||||| ||||||||||||||||| | Sbjct: 287 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 346 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 347 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 386 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 224 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 268 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 122 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 169
>dbj|AK061154.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-F08, full insert sequence Length = 1259 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 322 cgccgcgggctccgtccacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgt 381 |||||| |||| | ||||||| || ||||||||||||||| ||||||||||||||||| | Sbjct: 294 cgccgccggctgcctccacgtcctcctccgcgccgagcgctccctcggcgaccgcgacat 353 Query: 382 cggcgaggtccacatcccgctctccgagctgctctccggc 421 |||||||||| |||||||||| |||| | ||||||||| Sbjct: 354 cggcgaggtcatcatcccgctcgccgacgtcctctccggc 393 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 268 cggcggccgcaacccgacctggaacgccacggtccggttcgccgt 312 |||||||||| ||||| |||||||||||||| |||| ||| |||| Sbjct: 231 cggcggccgccacccggcctggaacgccacgctccgcttcaccgt 275 Score = 40.1 bits (20), Expect = 7.1 Identities = 41/48 (85%) Strand = Plus / Plus Query: 166 ggacctcaaggacgtgaacctcttctcggccatggaggtgtacgcggt 213 |||||| ||| |||| ||| || ||||| |||||||||||||||||| Sbjct: 129 ggacctgaagaacgtcaacttcatctcgcgcatggaggtgtacgcggt 176
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06, complete sequence Length = 136143 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 197 atggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcgcc 256 |||||||| |||||||| |||| ||| | |||||||||||| | ||||||||||||||| Sbjct: 36344 atggaggtctacgcggtggtctacctcgccggcgacccgcgcgcgcgccagcgcgtcgcc 36285 Query: 257 accgaccgctccggcggccgcaacccg 283 || |||||| ||||||||||||||||| Sbjct: 36284 acggaccgcgccggcggccgcaacccg 36258 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 cggcgaccgcgacgtcggcgaggt 390 |||||||||||||||||| ||||| Sbjct: 36153 cggcgaccgcgacgtcggggaggt 36130
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 93.7 bits (47), Expect = 5e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 197 atggaggtgtacgcggtcgtctcgctctcgggcgacccgcgctcccgccagcgcgtcgcc 256 |||||||| |||||||| |||| ||| | |||||||||||| | ||||||||||||||| Sbjct: 17659586 atggaggtctacgcggtggtctacctcgccggcgacccgcgcgcgcgccagcgcgtcgcc 17659527 Query: 257 accgaccgctccggcggccgcaacccg 283 || |||||| ||||||||||||||||| Sbjct: 17659526 acggaccgcgccggcggccgcaacccg 17659500 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 338 cacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgtcggcgaggt 390 ||||||||||||||||||||||||| | |||||||| |||||||||| ||||| Sbjct: 2746540 cacgtgctgctccgcgccgagcgcgtcttcggcgacagcgacgtcggggaggt 2746488 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 352 cgccgagcgcgccctcggcgaccgcga 378 |||||||||||||||||||| |||||| Sbjct: 14684830 cgccgagcgcgccctcggcgtccgcga 14684804 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctccggcggccgcaacccga 284 |||||||||||||||||||| Sbjct: 20810219 ctccggcggccgcaacccga 20810200 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 cggcgaccgcgacgtcggcgaggt 390 |||||||||||||||||| ||||| Sbjct: 17659395 cggcgaccgcgacgtcggggaggt 17659372
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 338 cacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgtcggcgaggt 390 ||||||||||||||||||||||||| | |||||||| |||||||||| ||||| Sbjct: 24866 cacgtgctgctccgcgccgagcgcgtcttcggcgacagcgacgtcggggaggt 24814
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 338 cacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgtcggcgaggt 390 ||||||||||||||||||||||||| | |||||||| |||||||||| ||||| Sbjct: 119938 cacgtgctgctccgcgccgagcgcgtcttcggcgacagcgacgtcggggaggt 119990
>dbj|AK107944.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B04, full insert sequence Length = 1069 Score = 73.8 bits (37), Expect = 5e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 338 cacgtgctgctccgcgccgagcgcgccctcggcgaccgcgacgtcggcgaggt 390 ||||||||||||||||||||||||| | |||||||| |||||||||| ||||| Sbjct: 302 cacgtgctgctccgcgccgagcgcgtcttcggcgacagcgacgtcggggaggt 354
>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16, complete sequence Length = 139615 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 352 cgccgagcgcgccctcggcgaccgcga 378 |||||||||||||||||||| |||||| Sbjct: 101124 cgccgagcgcgccctcggcgtccgcga 101098
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, complete sequence Length = 166052 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 352 cgccgagcgcgccctcggcgaccgcga 378 |||||||||||||||||||| |||||| Sbjct: 20284 cgccgagcgcgccctcggcgtccgcga 20258
>ref|NM_186090.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1572 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 caccgaccgctccggcggccgc 277 |||||||||||||||||||||| Sbjct: 546 caccgaccgctccggcggccgc 567
>emb|CR641502.2|CNS0ETYC Tetraodon nigroviridis full-length cDNA Length = 1222 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 347 ctccgcgccgagcgcgccctcggcgaccgc 376 ||||||||||||||||||| ||||||||| Sbjct: 267 ctccgcgccgagcgcgcccagggcgaccgc 296
>emb|CR641980.2|CNS0EUBM Tetraodon nigroviridis full-length cDNA Length = 1166 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 347 ctccgcgccgagcgcgccctcggcgaccgc 376 ||||||||||||||||||| ||||||||| Sbjct: 231 ctccgcgccgagcgcgcccagggcgaccgc 260
>emb|CR634655.2|CNS0EOO5 Tetraodon nigroviridis full-length cDNA Length = 1182 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 347 ctccgcgccgagcgcgccctcggcgaccgc 376 ||||||||||||||||||| ||||||||| Sbjct: 228 ctccgcgccgagcgcgcccagggcgaccgc 257
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcgag 388 |||||||||||||||||||||| Sbjct: 693388 cggcgaccgcgacgtcggcgag 693409 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 acgtgctgctccgcgccgagc 359 ||||||||||||||||||||| Sbjct: 4463978 acgtgctgctccgcgccgagc 4463998 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 4368981 cggcgaccgcgacgtcggcg 4369000
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 caccgaccgctccggcggccgc 277 |||||||||||||||||||||| Sbjct: 110671 caccgaccgctccggcggccgc 110650
>gb|AY837845.1| Bifidobacterium breve UCC 2003 GltRS (gltRS) gene, partial cds; ClpB (clpB) gene, complete cds; and permease gene, partial cds Length = 5579 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 gatcatcgccatggcgcagagggcg 139 |||||||||||||||||||| |||| Sbjct: 5281 gatcatcgccatggcgcagaaggcg 5257
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 acgtgctgctccgcgccgagcgcgc 363 |||||||||||||||||| |||||| Sbjct: 31372930 acgtgctgctccgcgccgcgcgcgc 31372906 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 329 ggctccgtccacgtgctgctccgcgccg 356 ||||||| |||||| ||||||||||||| Sbjct: 16365429 ggctccgaccacgttctgctccgcgccg 16365456
>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03 Length = 119796 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 acgtgctgctccgcgccgagcgcgc 363 |||||||||||||||||| |||||| Sbjct: 55504 acgtgctgctccgcgccgcgcgcgc 55480
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11 Length = 155168 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 acgtgctgctccgcgccgagcgcgc 363 |||||||||||||||||| |||||| Sbjct: 8327 acgtgctgctccgcgccgcgcgcgc 8303
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctcggcgaccgcgacgtcggcgagg 389 ||||||| ||||||||||||||||| Sbjct: 1052797 ctcggcggccgcgacgtcggcgagg 1052821
>ref|XM_475254.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2151 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ctccggcggccgcaacccga 284 |||||||||||||||||||| Sbjct: 1329 ctccggcggccgcaacccga 1348
>ref|XM_520265.1| PREDICTED: Pan troglodytes similar to RALGPS1 protein (LOC464742), mRNA Length = 860 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cccaaattcccaatccacag 47 |||||||||||||||||||| Sbjct: 809 cccaaattcccaatccacag 828
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cggccgcaacccgacctgga 290 |||||||||||||||||||| Sbjct: 17566 cggccgcaacccgacctgga 17585
>ref|XM_465616.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1975 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 329 ggctccgtccacgtgctgctccgcgccg 356 ||||||| |||||| ||||||||||||| Sbjct: 243 ggctccgaccacgttctgctccgcgccg 270
>ref|XM_473579.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1521 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1014 cggcgaccgcgacgtcggcg 1033
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctccggcggccgcaacccga 284 |||||||||||||||||||| Sbjct: 123443 ctccggcggccgcaacccga 123424
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ccgtgccggccaacgccgcg 328 |||||||||||||||||||| Sbjct: 2193979 ccgtgccggccaacgccgcg 2193960
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gcgcgccctcggcgaccgcg 377 |||||||||||||||||||| Sbjct: 1535264 gcgcgccctcggcgaccgcg 1535283
>ref|XM_955840.1| Neurospora crassa OR74A alkaline phosphatase [MIPS] (NCU01376.1) partial mRNA Length = 2007 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 cgagcgcgccctcggcgacc 374 |||||||||||||||||||| Sbjct: 1359 cgagcgcgccctcggcgacc 1378
>ref|XM_326868.1| Neurospora crassa OR74A alkaline phosphatase [MIPS] (NCU01376.1) partial mRNA Length = 2007 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 cgagcgcgccctcggcgacc 374 |||||||||||||||||||| Sbjct: 1359 cgagcgcgccctcggcgacc 1378
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gccgtgccggccaacgccgc 327 |||||||||||||||||||| Sbjct: 2631197 gccgtgccggccaacgccgc 2631178
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctccggcggccgcaacccga 284 |||||||||||||||||||| Sbjct: 66024 ctccggcggccgcaacccga 66005
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 caggatcatcgccatggcgc 131 |||||||||||||||||||| Sbjct: 857293 caggatcatcgccatggcgc 857274
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ccgccagcgcgtcgccaccg 260 |||||||||||||||||||| Sbjct: 4623267 ccgccagcgcgtcgccaccg 4623286 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 accgctccggcggccgcaac 280 |||||||||||||||||||| Sbjct: 2190500 accgctccggcggccgcaac 2190481
>gb|AY354515.1| Streptomyces sp. HK803 PlmR5 (plmR5), PlmR4 (plmR4), PlmR3 (plmR3), PlmR2 (plmR2), Plm8 (plm8), Plm4 (plm4), Plm5 (plm5), Plm6 (plm6), Plm7 (plm7), PlmT8 (plmT8), PlmT7 (plmT7), PlmT6 (plmT6), PlmT5 (plmT5), PlmT4 (plmT4), PlmT3 (plmT3), PlmT2 (plmT2), PlmT1 (plmT1), Plm1 (plm1), Plm2-3 (plm2-3), PlmJK (plmJK), PlmL (plmL), ChcA (chcA), PlmM (plmM), PlmR1 (plmR1), PlmI (plmI), PlmS2 (plmS2), PlmS3 (plmS3), and PlmS4 (plmS4) genes, complete cds Length = 76196 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cgccacggtccggttcgccg 311 |||||||||||||||||||| Sbjct: 17450 cgccacggtccggttcgccg 17469
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 cgagcgcgccctcggcgacc 374 |||||||||||||||||||| Sbjct: 1621605 cgagcgcgccctcggcgacc 1621586
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gctctccggcgcgcccgacg 431 |||||||||||||||||||| Sbjct: 322889 gctctccggcgcgcccgacg 322870
>emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chromosome 9q34.11-34.3 Contains part of the RALGPS1A gene for Ral guanine nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351) and the ANGPTL2 gene for angiopoietin-like 2 (angiopoietin-related protein 2)(ARP2, HARP), complete sequence Length = 145481 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cccaaattcccaatccacag 47 |||||||||||||||||||| Sbjct: 74069 cccaaattcccaatccacag 74088
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gccgtgccggccaacgccgc 327 |||||||||||||||||||| Sbjct: 811233 gccgtgccggccaacgccgc 811214
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 cgccgagcgcgccctcggcg 371 |||||||||||||||||||| Sbjct: 43405 cgccgagcgcgccctcggcg 43424
>emb|AL451020.1|NC15E11 Neurospora crassa DNA linkage group V Cosmid contig 15E11 Length = 79133 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 cgagcgcgccctcggcgacc 374 |||||||||||||||||||| Sbjct: 62891 cgagcgcgccctcggcgacc 62872
>gb|AY742785.1| Nitrosospira sp. NRS527 3-phosphoglycerate kinase (cbbK) gene, complete cds Length = 1311 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 cggcaccaggatcatcgccatggc 129 ||||||||||| |||||||||||| Sbjct: 1110 cggcaccaggaccatcgccatggc 1133
>gb|AY742784.1| Nitrosospira sp. GS832 3-phosphoglycerate kinase (cbbK) gene, complete cds Length = 1306 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 cggcaccaggatcatcgccatggc 129 ||||||||||| |||||||||||| Sbjct: 1105 cggcaccaggaccatcgccatggc 1128
>gb|AF531102.1| Homo sapiens interleukin 1 receptor, type I (IL1R1) gene, complete cds Length = 27864 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cccaaattcccaatccacag 47 |||||||||||||||||||| Sbjct: 18895 cccaaattcccaatccacag 18914
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gatcggcaccaggatcatcg 122 |||||||||||||||||||| Sbjct: 4543763 gatcggcaccaggatcatcg 4543782 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gcgaccgcgacgtcggcgag 388 |||||||||||||||||||| Sbjct: 1176344 gcgaccgcgacgtcggcgag 1176325
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ccgccagcgcgtcgccaccg 260 |||||||||||||||||||| Sbjct: 503691 ccgccagcgcgtcgccaccg 503672
>gb|AE012040.1| Xanthomonas axonopodis pv. citri str. 306, section 418 of 469 of the complete genome Length = 10691 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ccgccagcgcgtcgccaccg 260 |||||||||||||||||||| Sbjct: 8588 ccgccagcgcgtcgccaccg 8607
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 gcgaccgcgacgtcggcgag 388 |||||||||||||||||||| Sbjct: 448051 gcgaccgcgacgtcggcgag 448070
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 28866990 cggcgaccgcgacgtcggcg 28867009
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 catcccaaattcccaatcca 44 |||||||||||||||||||| Sbjct: 16070580 catcccaaattcccaatcca 16070561
>gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0039C14, complete sequence Length = 135098 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 catcccaaattcccaatcca 44 |||||||||||||||||||| Sbjct: 85685 catcccaaattcccaatcca 85666
>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06 Length = 162411 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ccacgtgctgctccgcgccg 356 |||||||||||||||||||| Sbjct: 94012 ccacgtgctgctccgcgccg 94031
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 gccgagcgcgccctcggcga 372 |||||||||||||||||||| Sbjct: 7640996 gccgagcgcgccctcggcga 7640977
>gb|AE004673.1| Pseudomonas aeruginosa PAO1, section 234 of 529 of the complete genome Length = 24397 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 tcgccaccgaccgctccggcggcc 275 ||||||||||||||| |||||||| Sbjct: 8551 tcgccaccgaccgcttcggcggcc 8574
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 247 gcgcgtcgccaccgaccgctccggcggc 274 |||||||||||||||| | ||||||||| Sbjct: 1029223 gcgcgtcgccaccgacgggtccggcggc 1029196
>gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete sequence Length = 179954 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cccaaattcccaatccacag 47 |||||||||||||||||||| Sbjct: 124054 cccaaattcccaatccacag 124073
>dbj|AP004870.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419C03 Length = 146929 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 329 ggctccgtccacgtgctgctccgcgccg 356 ||||||| |||||| ||||||||||||| Sbjct: 51095 ggctccgaccacgttctgctccgcgccg 51122
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 359 cgcgccctcggcgaccgcgacgtcggcg 386 ||||||| |||||||||||||| ||||| Sbjct: 5208661 cgcgcccgcggcgaccgcgacgacggcg 5208634 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 349 ccgcgccgagcgcgccctcggcgaccgcgacg 380 |||||||||||||| |||||| ||||||||| Sbjct: 1035466 ccgcgccgagcgcgatctcggccaccgcgacg 1035497
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ccacgtgctgctccgcgccg 356 |||||||||||||||||||| Sbjct: 144831 ccacgtgctgctccgcgccg 144850
>dbj|AK120901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030M24, full insert sequence Length = 1712 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1038 cggcgaccgcgacgtcggcg 1057
>dbj|AK121008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A02, full insert sequence Length = 1975 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 329 ggctccgtccacgtgctgctccgcgccg 356 ||||||| |||||| ||||||||||||| Sbjct: 243 ggctccgaccacgttctgctccgcgccg 270
>dbj|AK119612.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-G01, full insert sequence Length = 1714 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1037 cggcgaccgcgacgtcggcg 1056
>dbj|AK106797.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B06, full insert sequence Length = 1730 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 ccacgtgctgctccgcgccg 356 |||||||||||||||||||| Sbjct: 223 ccacgtgctgctccgcgccg 204
>emb|AJ340794.1|HSA340794 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DH8RS Length = 775 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ggcgcagagggcgctggagc 146 |||||||||||||||||||| Sbjct: 504 ggcgcagagggcgctggagc 485
>dbj|AK103182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121J02, full insert sequence Length = 1780 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1039 cggcgaccgcgacgtcggcg 1058
>dbj|AK101618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052H03, full insert sequence Length = 1904 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1137 cggcgaccgcgacgtcggcg 1156
>dbj|AK061650.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C03, full insert sequence Length = 1881 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 1038 cggcgaccgcgacgtcggcg 1057
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ccgccagcgcgtcgccaccg 260 |||||||||||||||||||| Sbjct: 515834 ccgccagcgcgtcgccaccg 515815
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 catcccaaattcccaatcca 44 |||||||||||||||||||| Sbjct: 16078821 catcccaaattcccaatcca 16078802
>emb|AJ629123.1| Streptomyces sp. DSM 40477 genomic region of the apramycin biosynthesis cluster Length = 41623 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 cgccctcggcgaccgcgacg 380 |||||||||||||||||||| Sbjct: 368 cgccctcggcgaccgcgacg 387
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cggcgaccgcgacgtcggcg 386 |||||||||||||||||||| Sbjct: 79152 cggcgaccgcgacgtcggcg 79171 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,712,214 Number of Sequences: 3902068 Number of extensions: 2712214 Number of successful extensions: 61235 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56830 Number of HSP's gapped (non-prelim): 4392 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)