Clone Name | bart43c08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK059889.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C11, full insert sequence Length = 918 Score = 428 bits (216), Expect = e-117 Identities = 339/380 (89%) Strand = Plus / Plus Query: 110 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 169 |||| |||||||||||||||||||||||||| ||||| |||||||||||||| || || | Sbjct: 89 ctccaatggcggtcaaggtctacgtcgtgtattactctatgtatggtcatgtcgccaaac 148 Query: 170 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 229 ||||||| |||||||||||||||||||| ||||| ||||||||||| |||||| | |||| Sbjct: 149 tagctgaggagatcaagaaaggtgcttcatctgtcgaaggcgtggaagttaaaatatggc 208 Query: 230 aggtccctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaagaccg 289 |||||||||| | ||| ||||| || || |||||||||||||| || || | || || Sbjct: 209 aggtccctgaaaccctctcagaggaggtgctgggcaagatgggcgcgccgccgaggagcg 268 Query: 290 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 349 ||| |||||||||| | || |||||||| ||||||||||||||||||||||||||||||| Sbjct: 269 acgcgccggtgatcgcgccgcaggagctcgcggaggccgacggcgtcctgttcgggttcc 328 Query: 350 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 409 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct: 329 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgccaccggcggcc 388 Query: 410 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 469 ||||| | ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 389 tgtggcgcgagcagagcctcgccggcaagcccgcgggcgtcttcttcagcaccggcaccc 448 Query: 470 agggcggcgggcaggagacg 489 |||||||||| ||||||||| Sbjct: 449 agggcggcggccaggagacg 468
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 293 bits (148), Expect = 3e-76 Identities = 208/228 (91%) Strand = Plus / Minus Query: 262 ggcaagatgggcgcccctcccaagaccgacgtgccggtgatctcccctcaggagctggcg 321 |||||||||||||| || || | || ||||| |||||||||| | || |||||||| ||| Sbjct: 39344 ggcaagatgggcgcgccgccgaggagcgacgcgccggtgatcgcgccgcaggagctcgcg 39285 Query: 322 gaggccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggcggcgcagatg 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39284 gaggccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggcggcgcagatg 39225 Query: 382 aaggcgttcttcgacgcgacgggcgggctgtggagggagcagagcctggccggcaagccg 441 ||||||||||||||||| || ||||| |||||| | ||||||||||| ||||||||||| Sbjct: 39224 aaggcgttcttcgacgccaccggcggcctgtggcgcgagcagagcctcgccggcaagccc 39165 Query: 442 gcgggcgtgttcttcagcacgggcacccagggcggcgggcaggagacg 489 |||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 39164 gcgggcgtcttcttcagcaccggcacccagggcggcggccaggagacg 39117 Score = 105 bits (53), Expect = 1e-19 Identities = 83/93 (89%) Strand = Plus / Minus Query: 142 tactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgcttcctct 201 ||||| |||||||||||||| || || |||||||| |||||||||||||||||||| ||| Sbjct: 40024 tactctatgtatggtcatgtcgccaaactagctgaggagatcaagaaaggtgcttcatct 39965 Query: 202 gttgaaggcgtggaggttaaagtgtggcaggtc 234 || ||||||||||| |||||| | ||||||||| Sbjct: 39964 gtcgaaggcgtggaagttaaaatatggcaggtc 39932 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 110 ctcccatggcggtcaaggtctacgtcgtgta 140 |||| |||||||||||||||||||||||||| Sbjct: 42027 ctccaatggcggtcaaggtctacgtcgtgta 41997
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 293 bits (148), Expect = 3e-76 Identities = 208/228 (91%) Strand = Plus / Minus Query: 262 ggcaagatgggcgcccctcccaagaccgacgtgccggtgatctcccctcaggagctggcg 321 |||||||||||||| || || | || ||||| |||||||||| | || |||||||| ||| Sbjct: 24525162 ggcaagatgggcgcgccgccgaggagcgacgcgccggtgatcgcgccgcaggagctcgcg 24525103 Query: 322 gaggccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggcggcgcagatg 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24525102 gaggccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggcggcgcagatg 24525043 Query: 382 aaggcgttcttcgacgcgacgggcgggctgtggagggagcagagcctggccggcaagccg 441 ||||||||||||||||| || ||||| |||||| | ||||||||||| ||||||||||| Sbjct: 24525042 aaggcgttcttcgacgccaccggcggcctgtggcgcgagcagagcctcgccggcaagccc 24524983 Query: 442 gcgggcgtgttcttcagcacgggcacccagggcggcgggcaggagacg 489 |||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 24524982 gcgggcgtcttcttcagcaccggcacccagggcggcggccaggagacg 24524935 Score = 105 bits (53), Expect = 1e-19 Identities = 83/93 (89%) Strand = Plus / Minus Query: 142 tactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgcttcctct 201 ||||| |||||||||||||| || || |||||||| |||||||||||||||||||| ||| Sbjct: 24525842 tactctatgtatggtcatgtcgccaaactagctgaggagatcaagaaaggtgcttcatct 24525783 Query: 202 gttgaaggcgtggaggttaaagtgtggcaggtc 234 || ||||||||||| |||||| | ||||||||| Sbjct: 24525782 gtcgaaggcgtggaagttaaaatatggcaggtc 24525750 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 110 ctcccatggcggtcaaggtctacgtcgtgta 140 |||| |||||||||||||||||||||||||| Sbjct: 24527845 ctccaatggcggtcaaggtctacgtcgtgta 24527815
>gb|BT017179.1| Zea mays clone EL01N0369C08.c mRNA sequence Length = 881 Score = 262 bits (132), Expect = 1e-66 Identities = 318/380 (83%) Strand = Plus / Plus Query: 110 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 169 |||| |||||||| |||||||||||||||||||| ||||||||||| ||||||| || | Sbjct: 28 ctccaatggcggttaaggtctacgtcgtgtactattccatgtatggacatgttggcaaac 87 Query: 170 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 229 ||||||| |||||| |||||||||| || ||||||||||| || || | |||| |||| Sbjct: 88 tagctgaagagatccagaaaggtgcctcgtctgttgaaggtgttgaagctaaaacatggc 147 Query: 230 aggtccctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaagaccg 289 |||||||||| | ||| |||||||| ||||| ||||||||||| || || ||| | | Sbjct: 148 aggtccctgaaaccctccctgaggaagtgcttggaaagatgggcgcaccccctaagcctg 207 Query: 290 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 349 ||||||| || ||| | || || || || || ||||||||||| |||| |||||||||| Sbjct: 208 acgtgccagtcatcacgccgcaagaactcgcagaggccgacggaatcctcttcgggttcc 267 Query: 350 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 409 | ||||||||||| |||||||| ||||||||||||||||||||||| || || || |||| Sbjct: 268 caacgaggttcggaatgatggcagcgcagatgaaggcgttcttcgatgccactggtgggc 327 Query: 410 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 469 | ||||||||||||||||| ||||||||||| || ||||| |||||| |||| || ||| Sbjct: 328 tctggagggagcagagccttgccggcaagcctgccggcgtcttcttctgcactggatccc 387 Query: 470 agggcggcgggcaggagacg 489 |||| || || ||||||||| Sbjct: 388 agggtggtggccaggagacg 407
>gb|AY104807.1| Zea mays PCO107981 mRNA sequence Length = 945 Score = 262 bits (132), Expect = 1e-66 Identities = 318/380 (83%) Strand = Plus / Plus Query: 110 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 169 |||| |||||||| |||||||||||||||||||| ||||||||||| ||||||| || | Sbjct: 106 ctccaatggcggttaaggtctacgtcgtgtactattccatgtatggacatgttggcaaac 165 Query: 170 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 229 ||||||| |||||| |||||||||| || ||||||||||| || || | |||| |||| Sbjct: 166 tagctgaagagatccagaaaggtgcctcgtctgttgaaggtgttgaagctaaaacatggc 225 Query: 230 aggtccctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaagaccg 289 |||||||||| | ||| |||||||| ||||| ||||||||||| || || ||| | | Sbjct: 226 aggtccctgaaaccctccctgaggaagtgcttggaaagatgggcgcaccccctaagcctg 285 Query: 290 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 349 ||||||| || ||| | || || || || || ||||||||||| |||| |||||||||| Sbjct: 286 acgtgccagtcatcacgccgcaagaactcgcagaggccgacggaatcctcttcgggttcc 345 Query: 350 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 409 | ||||||||||| |||||||| ||||||||||||||||||||||| || || || |||| Sbjct: 346 caacgaggttcggaatgatggcagcgcagatgaaggcgttcttcgatgccactggtgggc 405 Query: 410 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 469 | ||||||||||||||||| ||||||||||| || ||||| |||||| |||| || ||| Sbjct: 406 tctggagggagcagagccttgccggcaagcctgccggcgtcttcttctgcactggatccc 465 Query: 470 agggcggcgggcaggagacg 489 |||| || || ||||||||| Sbjct: 466 agggtggtggccaggagacg 485
>gb|BT017374.1| Zea mays clone EL01N0325B07.c mRNA sequence Length = 933 Score = 246 bits (124), Expect = 6e-62 Identities = 304/364 (83%) Strand = Plus / Minus Query: 110 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 169 |||| |||||||| ||| ||||||| |||||||| ||||||||||| ||||||| || | Sbjct: 839 ctccaatggcggttaagatctacgttgtgtactattccatgtatgggcatgttggcaaac 780 Query: 170 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 229 ||||||| ||||||||||||||||| | ||||||||||| || |||| |||| | |||| Sbjct: 779 tagctgaagagatcaagaaaggtgccttatctgttgaaggtgttgaggctaaaatatggc 720 Query: 230 aggtccctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaagaccg 289 |||||||||| || || || ||||| ||||| ||||||||||| || || ||| ||| Sbjct: 719 aggtccctgaaattctctctgaagaagtgcttggaaagatgggcgcgccccctaagcccg 660 Query: 290 acgtgccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcc 349 ||||||| || ||| | || ||||| || || ||||| ||||| |||| || ||||||| Sbjct: 659 acgtgccagtcatcacaccgcaggaacttgcagaggctgacggtatcctctttgggttcc 600 Query: 350 cgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggc 409 |||| |||||||| |||||||| || |||||||||||||||||||| || || || |||| Sbjct: 599 cgacaaggttcggaatgatggcagctcagatgaaggcgttcttcgatgccaccggtgggc 540 Query: 410 tgtggagggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcaccc 469 | ||||||||||||||||| || |||||||| || ||| ||||||||||||| || |||| Sbjct: 539 tctggagggagcagagcctcgctggcaagcctgccggcatgttcttcagcactggaaccc 480 Query: 470 aggg 473 |||| Sbjct: 479 aggg 476
>ref|NM_191522.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 612 Score = 210 bits (106), Expect = 3e-51 Identities = 307/374 (82%) Strand = Plus / Plus Query: 115 atggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagctagct 174 |||||||| |||||||| |||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 1 atggcggtgaaggtctatgtcgtgtactactctatgtatggacatgttgctaaactagct 60 Query: 175 gatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggcaggtc 234 || ||||||||||| |||||||| ||| ||||||| || |||| |||| | |||||||| Sbjct: 61 gaagagatcaagaagggtgcttcatctattgaaggtgttgaggctaaaatatggcaggtt 120 Query: 235 cctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaagaccgacgtg 294 ||||| | || | |||||||| ||||| ||||||||||| ||||| ||| | || ||| Sbjct: 121 cctgaaactctccatgaggaagtacttggaaagatgggcgcgcctcctaagccagatgtg 180 Query: 295 ccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcccgacg 354 || |||| | || || || || | ||||| || || ||||||| |||||||| || Sbjct: 181 ccaacgatcacaccacaagaacttactgaggctgatggaatcctgtttgggttccctaca 240 Query: 355 aggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggctgtgg 414 ||||| ||||||||||| ||||||||||| || ||||| || || || || || |||||| Sbjct: 241 aggtttggcatgatggctgcgcagatgaaagcattctttgatgcaaccggtggcctgtgg 300 Query: 415 agggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggc 474 || ||||||||||| || |||||||| || ||| | ||||||||||| || ||||||||| Sbjct: 301 agtgagcagagccttgcaggcaagcccgccggcatcttcttcagcactggtacccagggc 360 Query: 475 ggcgggcaggagac 488 || || |||||||| Sbjct: 361 ggtggtcaggagac 374
>dbj|AK104580.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-B10, full insert sequence Length = 971 Score = 210 bits (106), Expect = 3e-51 Identities = 307/374 (82%) Strand = Plus / Plus Query: 115 atggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagctagct 174 |||||||| |||||||| |||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 79 atggcggtgaaggtctatgtcgtgtactactctatgtatggacatgttgctaaactagct 138 Query: 175 gatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggcaggtc 234 || ||||||||||| |||||||| ||| ||||||| || |||| |||| | |||||||| Sbjct: 139 gaagagatcaagaagggtgcttcatctattgaaggtgttgaggctaaaatatggcaggtt 198 Query: 235 cctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaagaccgacgtg 294 ||||| | || | |||||||| ||||| ||||||||||| ||||| ||| | || ||| Sbjct: 199 cctgaaactctccatgaggaagtacttggaaagatgggcgcgcctcctaagccagatgtg 258 Query: 295 ccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcccgacg 354 || |||| | || || || || | ||||| || || ||||||| |||||||| || Sbjct: 259 ccaacgatcacaccacaagaacttactgaggctgatggaatcctgtttgggttccctaca 318 Query: 355 aggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggctgtgg 414 ||||| ||||||||||| ||||||||||| || ||||| || || || || || |||||| Sbjct: 319 aggtttggcatgatggctgcgcagatgaaagcattctttgatgcaaccggtggcctgtgg 378 Query: 415 agggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggc 474 || ||||||||||| || |||||||| || ||| | ||||||||||| || ||||||||| Sbjct: 379 agtgagcagagccttgcaggcaagcccgccggcatcttcttcagcactggtacccagggc 438 Query: 475 ggcgggcaggagac 488 || || |||||||| Sbjct: 439 ggtggtcaggagac 452
>dbj|AK059820.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-D02, full insert sequence Length = 993 Score = 210 bits (106), Expect = 3e-51 Identities = 307/374 (82%) Strand = Plus / Plus Query: 115 atggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagctagct 174 |||||||| |||||||| |||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 79 atggcggtgaaggtctatgtcgtgtactactctatgtatggacatgttgctaaactagct 138 Query: 175 gatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggcaggtc 234 || ||||||||||| |||||||| ||| ||||||| || |||| |||| | |||||||| Sbjct: 139 gaagagatcaagaagggtgcttcatctattgaaggtgttgaggctaaaatatggcaggtt 198 Query: 235 cctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaagaccgacgtg 294 ||||| | || | |||||||| ||||| ||||||||||| ||||| ||| | || ||| Sbjct: 199 cctgaaactctccatgaggaagtacttggaaagatgggcgcgcctcctaagccagatgtg 258 Query: 295 ccggtgatctcccctcaggagctggcggaggccgacggcgtcctgttcgggttcccgacg 354 || |||| | || || || || | ||||| || || ||||||| |||||||| || Sbjct: 259 ccaacgatcacaccacaagaacttactgaggctgatggaatcctgtttgggttccctaca 318 Query: 355 aggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggctgtgg 414 ||||| ||||||||||| ||||||||||| || ||||| || || || || || |||||| Sbjct: 319 aggtttggcatgatggctgcgcagatgaaagcattctttgatgcaaccggtggcctgtgg 378 Query: 415 agggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggc 474 || ||||||||||| || |||||||| || ||| | ||||||||||| || ||||||||| Sbjct: 379 agtgagcagagccttgcaggcaagcccgccggcatcttcttcagcactggtacccagggc 438 Query: 475 ggcgggcaggagac 488 || || |||||||| Sbjct: 439 ggtggtcaggagac 452
>gb|AY880319.1| Triticum monococcum quinone reductase 2 mRNA, complete cds Length = 930 Score = 151 bits (76), Expect = 3e-33 Identities = 151/176 (85%) Strand = Plus / Plus Query: 110 ctcccatggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagc 169 |||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| | Sbjct: 66 ctccaatggcggtcaaggtctatgtcgtgtactactccatgtatggacatgtcgctaaac 125 Query: 170 tagctgatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggc 229 ||||||||||||| |||||||||| || || ||||||||||| || | |||| | |||| Sbjct: 126 tagctgatgagataaagaaaggtgtgtcgtcagttgaaggcgtcgaagctaaaatatggc 185 Query: 230 aggtccctgagatcctgaacgaggaagtccttggcaagatgggcgcccctcccaag 285 |||||||||| | || ||||||||| ||||| |||||||| || ||||||||| Sbjct: 186 aggtccctgaaactctccccgaggaagtacttggaaagatgggtgcacctcccaag 241 Score = 83.8 bits (42), Expect = 5e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 355 aggttcggcatgatggcggcgcagatgaaggcgttcttcgacgcgacgggcgggctgtgg 414 ||||| ||||||||||| || || |||||||| ||||| || || || || || |||||| Sbjct: 311 aggtttggcatgatggctgcacaaatgaaggcattctttgatgcaactggtggcctgtgg 370 Query: 415 agggagcagagcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggc 474 ||||||||||| || || ||||| || || ||| | ||||||||||| || || ||||| Sbjct: 371 agggagcagagtcttgcaggcaaacctgcaggcattttcttcagcaccggtactcagggt 430 Query: 475 ggcgggcaggagac 488 |||||||||||||| Sbjct: 431 ggcgggcaggagac 444
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 115 bits (58), Expect = 1e-22 Identities = 130/154 (84%) Strand = Plus / Plus Query: 335 tcctgttcgggttcccgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcg 394 ||||||| |||||||| || ||||| ||||||||||| ||||||||||| || ||||| | Sbjct: 33260781 tcctgtttgggttccctacaaggtttggcatgatggctgcgcagatgaaagcattctttg 33260840 Query: 395 acgcgacgggcgggctgtggagggagcagagcctggccggcaagccggcgggcgtgttct 454 | || || || || |||||||| ||||||||||| || |||||||| || ||| | |||| Sbjct: 33260841 atgcaaccggtggcctgtggagtgagcagagccttgcaggcaagcccgccggcatcttct 33260900 Query: 455 tcagcacgggcacccagggcggcgggcaggagac 488 ||||||| || ||||||||||| || |||||||| Sbjct: 33260901 tcagcactggtacccagggcggtggtcaggagac 33260934 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 138 gtactactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgcttc 197 ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||| Sbjct: 33259811 gtactactctatgtatggacatgttgctaaactagctgaagagatcaagaagggtgcttc 33259870 Query: 198 ctctgttgaaggcgtggaggttaaagtgtggcaggt 233 ||| ||||||| || |||| |||| | |||||||| Sbjct: 33259871 atctattgaaggtgttgaggctaaaatatggcaggt 33259906 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 cctccgctcccttcccttccc 35 ||||||||||||||||||||| Sbjct: 12831972 cctccgctcccttcccttccc 12831992
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1070A12 Length = 148449 Score = 115 bits (58), Expect = 1e-22 Identities = 130/154 (84%) Strand = Plus / Plus Query: 335 tcctgttcgggttcccgacgaggttcggcatgatggcggcgcagatgaaggcgttcttcg 394 ||||||| |||||||| || ||||| ||||||||||| ||||||||||| || ||||| | Sbjct: 54028 tcctgtttgggttccctacaaggtttggcatgatggctgcgcagatgaaagcattctttg 54087 Query: 395 acgcgacgggcgggctgtggagggagcagagcctggccggcaagccggcgggcgtgttct 454 | || || || || |||||||| ||||||||||| || |||||||| || ||| | |||| Sbjct: 54088 atgcaaccggtggcctgtggagtgagcagagccttgcaggcaagcccgccggcatcttct 54147 Query: 455 tcagcacgggcacccagggcggcgggcaggagac 488 ||||||| || ||||||||||| || |||||||| Sbjct: 54148 tcagcactggtacccagggcggtggtcaggagac 54181 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 138 gtactactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgcttc 197 ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||| Sbjct: 53058 gtactactctatgtatggacatgttgctaaactagctgaagagatcaagaagggtgcttc 53117 Query: 198 ctctgttgaaggcgtggaggttaaagtgtggcaggt 233 ||| ||||||| || |||| |||| | |||||||| Sbjct: 53118 atctattgaaggtgttgaggctaaaatatggcaggt 53153
>ref|XM_480009.1| Oryza sativa (japonica cultivar-group), mRNA Length = 834 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 123 caaggtctacgtcgtgtactactccatgtatggtcatgttgctaagctagctgatgagat 182 |||| ||||| | |||||||||||||||||||| |||||||| |||||||| || ||||| Sbjct: 70 caagatctacatagtgtactactccatgtatggccatgttgcaaagctagcagaggagat 129 Query: 183 caagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggcaggtccctgaga 241 | ||||||||||||| || |||||||| || ||||| || | ||||||||||| |||| Sbjct: 130 cgagaaaggtgcttcttcagttgaaggagttgaggtcaagctatggcaggtcccagaga 188
>dbj|AK070351.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054M12, full insert sequence Length = 834 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 123 caaggtctacgtcgtgtactactccatgtatggtcatgttgctaagctagctgatgagat 182 |||| ||||| | |||||||||||||||||||| |||||||| |||||||| || ||||| Sbjct: 70 caagatctacatagtgtactactccatgtatggccatgttgcaaagctagcagaggagat 129 Query: 183 caagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggcaggtccctgaga 241 | ||||||||||||| || |||||||| || ||||| || | ||||||||||| |||| Sbjct: 130 cgagaaaggtgcttcttcagttgaaggagttgaggtcaagctatggcaggtcccagaga 188
>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19, complete sequence Length = 153276 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 316 ctggcggaggccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggcggcg 375 |||| |||||||||||| || |||||||||||||||||||||| |||| ||||| ||| Sbjct: 146238 ctggaggaggccgacggggtgctgttcgggttcccgacgaggtacggcgccatggccgcg 146297 Query: 376 cagatgaaggcgttcttcgac 396 ||||||||||||||||||||| Sbjct: 146298 cagatgaaggcgttcttcgac 146318
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 316 ctggcggaggccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggcggcg 375 |||| |||||||||||| || |||||||||||||||||||||| |||| ||||| ||| Sbjct: 15087619 ctggaggaggccgacggggtgctgttcgggttcccgacgaggtacggcgccatggccgcg 15087678 Query: 376 cagatgaaggcgttcttcgac 396 ||||||||||||||||||||| Sbjct: 15087679 cagatgaaggcgttcttcgac 15087699
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 316 ctggcggaggccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggcggcg 375 |||| |||||||||||| || |||||||||||||||||||||| |||| ||||| ||| Sbjct: 15095860 ctggaggaggccgacggggtgctgttcgggttcccgacgaggtacggcgccatggccgcg 15095919 Query: 376 cagatgaaggcgttcttcgac 396 ||||||||||||||||||||| Sbjct: 15095920 cagatgaaggcgttcttcgac 15095940
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Minus Query: 138 gtactactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgcttc 197 |||||||||||||||||| |||||||| |||||||| || |||||| ||||||||||||| Sbjct: 2177581 gtactactccatgtatggccatgttgcaaagctagcagaggagatcgagaaaggtgcttc 2177522 Query: 198 ctctgttgaaggcgtggaggt 218 || |||||||| || ||||| Sbjct: 2177521 ttcagttgaaggagttgaggt 2177501
>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_D01 Length = 97862 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Minus Query: 138 gtactactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgcttc 197 |||||||||||||||||| |||||||| |||||||| || |||||| ||||||||||||| Sbjct: 55843 gtactactccatgtatggccatgttgcaaagctagcagaggagatcgagaaaggtgcttc 55784 Query: 198 ctctgttgaaggcgtggaggt 218 || |||||||| || ||||| Sbjct: 55783 ttcagttgaaggagttgaggt 55763
>ref|NM_124830.3| Arabidopsis thaliana FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) AT5G54500 (FQR1) mRNA, complete cds Length = 952 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 134 tcgtgtactactccatgtatggtcatgttg 163 ||||||||||||| |||||||||||||||| Sbjct: 109 tcgtgtactactctatgtatggtcatgttg 138
>gb|AY120735.1| Arabidopsis thaliana 1,4-benzoquinone reductase-like protein (At5g54500) mRNA, complete cds Length = 913 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 134 tcgtgtactactccatgtatggtcatgttg 163 ||||||||||||| |||||||||||||||| Sbjct: 109 tcgtgtactactctatgtatggtcatgttg 138
>emb|BX832658.1|CNS0A1X5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH87ZD12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1243 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 134 tcgtgtactactccatgtatggtcatgttg 163 ||||||||||||| |||||||||||||||| Sbjct: 22 tcgtgtactactctatgtatggtcatgttg 51
>gb|BT002194.1| Arabidopsis thaliana 1,4-benzoquinone reductase-like protein (At5g54500) mRNA, complete cds Length = 726 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 134 tcgtgtactactccatgtatggtcatgttg 163 ||||||||||||| |||||||||||||||| Sbjct: 20 tcgtgtactactctatgtatggtcatgttg 49
>gb|AY105207.1| Zea mays PCO125387 mRNA sequence Length = 603 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Plus Query: 312 ggagctggcggaggccgacggcgtcctgttcgggttcccgacgaggttcggcatgatggc 371 ||||||| |||||| ||||| || |||| || ||||||||||||| |||| ||||| Sbjct: 87 ggagctgcaggaggctgacggagtgttgtttggcttcccgacgaggtacggcgccatggc 146 Query: 372 ggcgcagatgaaggcgttcttcgac 396 ||||| |||||||| ||||||||| Sbjct: 147 tgcgcaaatgaaggccttcttcgac 171
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Plus Query: 426 cctggccggcaagccggcgggcgtgttc 453 |||||||||||||||||| ||||||||| Sbjct: 3879754 cctggccggcaagccggccggcgtgttc 3879781
>gb|AE011725.1| Xanthomonas axonopodis pv. citri str. 306, section 103 of 469 of the complete genome Length = 13873 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 426 cctggccggcaagccggcgggcgtgttc 453 |||||||||||||||||| ||||||||| Sbjct: 774 cctggccggcaagccggccggcgtgttc 747
>ref|NM_118861.3| Arabidopsis thaliana FMN binding / oxidoreductase AT4G27270 mRNA, complete cds Length = 722 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 136 gtgtactactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgct 195 ||||||||||| |||||||||||||| | || ||||| | ||||| | |||||||||| Sbjct: 22 gtgtactactcaatgtatggtcatgtggagaaattagctcaagagattaggaaaggtgct 81 Query: 196 tcctctgttga 206 | |||||||| Sbjct: 82 gcttctgttga 92
>ref|XM_469744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 759 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 425 gcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggcggcgg 479 |||| ||||||||||| || ||| | ||| ||||||| |||||||||| |||||| Sbjct: 455 gcctcgccggcaagccagccggcctcttcgtcagcaccggcacccaggccggcgg 509 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 tctacgtcgtgtactactccatgta 152 |||||||||||| |||||||||||| Sbjct: 137 tctacgtcgtgttctactccatgta 161
>gb|AY644646.1| Oryza sativa (indica cultivar-group) putative quinone reductase (QR) mRNA, complete cds Length = 963 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 425 gcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggcggcgg 479 |||| ||||||||||| || ||| | ||| ||||||| |||||||||| |||||| Sbjct: 460 gcctcgccggcaagccagccggcctcttcgtcagcaccggcacccaggccggcgg 514 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 tctacgtcgtgtactactccatgta 152 |||||||||||| |||||||||||| Sbjct: 142 tctacgtcgtgttctactccatgta 166
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Minus Query: 425 gcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggcggcgg 479 |||| ||||||||||| || ||| | ||| ||||||| |||||||||| |||||| Sbjct: 30515788 gcctcgccggcaagccagccggcctcttcgtcagcaccggcacccaggccggcgg 30515734 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 128 tctacgtcgtgtactactccatgta 152 |||||||||||| |||||||||||| Sbjct: 30516106 tctacgtcgtgttctactccatgta 30516082
>gb|BT010514.1| Arabidopsis thaliana At4g27270 gene, complete cds Length = 618 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 136 gtgtactactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgct 195 ||||||||||| |||||||||||||| | || ||||| | ||||| | |||||||||| Sbjct: 22 gtgtactactcaatgtatggtcatgtggagaaattagctcaagagattaggaaaggtgct 81 Query: 196 tcctctgttga 206 | |||||||| Sbjct: 82 gcttctgttga 92
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Minus Query: 425 gcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggcggcgg 479 |||| ||||||||||| || ||| | ||| ||||||| |||||||||| |||||| Sbjct: 47361 gcctcgccggcaagccagccggcctcttcgtcagcaccggcacccaggccggcgg 47307 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 128 tctacgtcgtgtactactccatgta 152 |||||||||||| |||||||||||| Sbjct: 47679 tctacgtcgtgttctactccatgta 47655
>dbj|AK221196.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL23-01-P13 Length = 808 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 136 gtgtactactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgct 195 ||||||||||| |||||||||||||| | || ||||| | ||||| | |||||||||| Sbjct: 74 gtgtactactcaatgtatggtcatgtggagaaattagctcaagagattaggaaaggtgct 133 Query: 196 tcctctgttga 206 | |||||||| Sbjct: 134 gcttctgttga 144
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Minus Query: 425 gcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggcggcgg 479 |||| ||||||||||| || ||| | ||| ||||||| |||||||||| |||||| Sbjct: 30607210 gcctcgccggcaagccagccggcctcttcgtcagcaccggcacccaggccggcgg 30607156 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 128 tctacgtcgtgtactactccatgta 152 |||||||||||| |||||||||||| Sbjct: 30607528 tctacgtcgtgttctactccatgta 30607504
>gb|AF110134.1|AF110134 Volvox carteri f. nagariensis GlsA (glsA) gene, complete cds Length = 8337 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 13 tgcctccgctcccttcccttccc 35 ||||||||||||||||||||||| Sbjct: 7968 tgcctccgctcccttcccttccc 7946
>dbj|AK110695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A09, full insert sequence Length = 952 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 425 gcctggccggcaagccggcgggcgtgttcttcagcacgggcacccagggcggcgg 479 |||| ||||||||||| || ||| | ||| ||||||| |||||||||| |||||| Sbjct: 449 gcctcgccggcaagccagccggcctcttcgtcagcaccggcacccaggccggcgg 503 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 128 tctacgtcgtgtactactccatgta 152 |||||||||||| |||||||||||| Sbjct: 131 tctacgtcgtgttctactccatgta 155
>emb|CR962121.2| Medicago truncatula chromosome 5 clone mte1-77f5, COMPLETE SEQUENCE Length = 107392 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 367 atggcggcgcagatgaaggcgtt 389 ||||||||||||||||||||||| Sbjct: 56716 atggcggcgcagatgaaggcgtt 56694
>dbj|D45900.1| Lithospermum erythrorhizon mRNA for LEDI-3 protein, complete cds Length = 961 Score = 46.1 bits (23), Expect = 0.11 Identities = 95/119 (79%) Strand = Plus / Plus Query: 115 atggcggtcaaggtctacgtcgtgtactactccatgtatggtcatgttgctaagctagct 174 ||||| |||||| ||||| | || |||||||| | ||| ||||||||| || || ||| Sbjct: 34 atggcagtcaagctctacattgtatactactctacgtacggtcatgttctcaaacttgct 93 Query: 175 gatgagatcaagaaaggtgcttcctctgttgaaggcgtggaggttaaagtgtggcaggt 233 || ||||| |||||||||||| || ||||| || |||||||| ||| | |||||||| Sbjct: 94 gaagagatgaagaaaggtgctgaatccgttgatggagtggaggtcaaattatggcaggt 152
>dbj|AB026634.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F24B18 Length = 50524 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 138 gtactactccatgtatggtcatgttg 163 ||||||||| |||||||||||||||| Sbjct: 41501 gtactactctatgtatggtcatgttg 41526
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 428 tggccggcaagccggcgggcgtgttc 453 |||||||||||||||| ||||||||| Sbjct: 3880431 tggccggcaagccggccggcgtgttc 3880456
>gb|AF064864.1| Homo sapiens chromosome 21q22.3 PAC 21L13, complete sequence Length = 120007 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 cctccgctcccttcccttccc 35 ||||||||||||||||||||| Sbjct: 83644 cctccgctcccttcccttccc 83624
>gb|AC154523.2| Mus musculus BAC clone RP24-65H12 from chromosome 13, complete sequence Length = 196410 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 15 cctccgctcccttcccttccccctc 39 ||||| ||||||||||||||||||| Sbjct: 112626 cctcccctcccttcccttccccctc 112650
>ref|XM_615234.2| PREDICTED: Bos taurus similar to Zinc finger protein 236 (LOC535214), mRNA Length = 6277 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 cggagccgtcctcctcctcct 76 ||||||||||||||||||||| Sbjct: 3439 cggagccgtcctcctcctcct 3419
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 371 cggcgcagatgaaggcgttcttcgacgcg 399 ||||| || |||||||||||||||||||| Sbjct: 302179 cggcgaagctgaaggcgttcttcgacgcg 302207
>gb|AC110387.6| Rattus norvegicus 1 BAC CH230-209H8 (Children's Hospital Oakland Research Institute) complete sequence Length = 226439 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 15 cctccgctcccttcccttccccctc 39 ||||| ||||||||||||||||||| Sbjct: 145060 cctcccctcccttcccttccccctc 145036
>gb|AC124391.3| Mus musculus BAC clone RP24-439L13 from chromosome 18, complete sequence Length = 153492 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 15 cctccgctcccttcccttccccctc 39 ||||| ||||||||||||||||||| Sbjct: 111577 cctcccctcccttcccttccccctc 111553
>emb|AL163283.2|HS21C083 Homo sapiens chromosome 21 segment HS21C083 Length = 340000 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 cctccgctcccttcccttccc 35 ||||||||||||||||||||| Sbjct: 168907 cctccgctcccttcccttccc 168887
>gb|AC166997.1| Mus musculus BAC clone RP23-107H9 from chromosome 14, complete sequence Length = 201316 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 15 cctccgctcccttcccttccccctc 39 ||||| ||||||||||||||||||| Sbjct: 37212 cctcctctcccttcccttccccctc 37188
>ref|XM_503163.1| Yarrowia lipolytica CLIB122, YALI0D22748g predicted mRNA Length = 1383 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 444 gggcgtgttcttcagcacggg 464 ||||||||||||||||||||| Sbjct: 1068 gggcgtgttcttcagcacggg 1048
>emb|AL158090.3| Human DNA sequence from clone RP4-564O4 on chromosome 20 Contains a putative novel gene, ESTs and GSSs, complete sequence Length = 35094 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 ctccgctcccttcccttcccc 36 ||||||||||||||||||||| Sbjct: 15349 ctccgctcccttcccttcccc 15329
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 371 cggcgcagatgaaggcgttcttcgacgcg 399 ||||| || |||||||||||||||||||| Sbjct: 79462 cggcgaagctgaaggcgttcttcgacgcg 79490
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 gctcccttcccttccccctcg 40 ||||||||||||||||||||| Sbjct: 84566 gctcccttcccttccccctcg 84546
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66 Length = 198372 Score = 42.1 bits (21), Expect = 1.7 Identities = 57/69 (82%) Strand = Plus / Minus Query: 138 gtactactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgcttc 197 ||||||||| |||||||||||||| | || ||||| | ||||| | |||||||||| | Sbjct: 166750 gtactactcaatgtatggtcatgtggagaaattagctcaagagattaggaaaggtgctgc 166691 Query: 198 ctctgttga 206 |||||||| Sbjct: 166690 ttctgttga 166682
>emb|AL030978.1|ATM4I22 Arabidopsis thaliana DNA chromosome 4, P1 clone M4I22 (ESSA project) Length = 83371 Score = 42.1 bits (21), Expect = 1.7 Identities = 57/69 (82%) Strand = Plus / Minus Query: 138 gtactactccatgtatggtcatgttgctaagctagctgatgagatcaagaaaggtgcttc 197 ||||||||| |||||||||||||| | || ||||| | ||||| | |||||||||| | Sbjct: 38904 gtactactcaatgtatggtcatgtggagaaattagctcaagagattaggaaaggtgctgc 38845 Query: 198 ctctgttga 206 |||||||| Sbjct: 38844 ttctgttga 38836
>gb|AC099731.5| Homo sapiens BAC clone RP11-1244M4 from 7, complete sequence Length = 216250 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 cctccgctcccttcccttccc 35 ||||||||||||||||||||| Sbjct: 34043 cctccgctcccttcccttccc 34023
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 ttcggcatgatggcggcgcag 378 ||||||||||||||||||||| Sbjct: 145846 ttcggcatgatggcggcgcag 145866
>gb|AC025767.6|AC025767 Homo sapiens chromosome 5 clone CTD-2087B2, complete sequence Length = 134545 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 ctccgctcccttcccttcccc 36 ||||||||||||||||||||| Sbjct: 10295 ctccgctcccttcccttcccc 10315
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 gctcccttcccttccccctcg 40 ||||||||||||||||||||| Sbjct: 31102485 gctcccttcccttccccctcg 31102465 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tcctcctcctcctaccagat 83 |||||||||||||||||||| Sbjct: 28898244 tcctcctcctcctaccagat 28898263
>gb|AC144411.2| Homo sapiens BAC clone GS1-146C24 from 7, complete sequence Length = 178059 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 cctccgctcccttcccttccc 35 ||||||||||||||||||||| Sbjct: 88277 cctccgctcccttcccttccc 88257
>emb|BX511099.12| Human DNA sequence from clone XX-82516H2 on chromosome X, complete sequence Length = 25946 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 15 cctccgctcccttcccttccccctc 39 ||||| ||||||||||||||||||| Sbjct: 18641 cctccactcccttcccttccccctc 18617
>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489E06 Length = 140229 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 cctccgctcccttcccttccc 35 ||||||||||||||||||||| Sbjct: 112371 cctccgctcccttcccttccc 112391
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 371 cggcgcagatgaaggcgttcttcgacgcg 399 ||||| || |||||||||||||||||||| Sbjct: 76965 cggcgaagctgaaggcgttcttcgacgcg 76993
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 431 ccggcaagccggcgggcgtgt 451 ||||||||||||||||||||| Sbjct: 3938583 ccggcaagccggcgggcgtgt 3938603
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 gggcgtgttcttcagcacggg 464 ||||||||||||||||||||| Sbjct: 2938851 gggcgtgttcttcagcacggg 2938871
>emb|AL121612.5|CNS01DS1 Human chromosome 14 DNA sequence BAC R-179A9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180914 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 cctccgctcccttcccttccc 35 ||||||||||||||||||||| Sbjct: 64342 cctccgctcccttcccttccc 64362
>ref|NM_053885.1| Rattus norvegicus arginine-glutamic acid dipeptide (RE) repeats (Rere), mRNA Length = 6659 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 gggctgtggagggagcagag 425 |||||||||||||||||||| Sbjct: 3649 gggctgtggagggagcagag 3630
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 ccggcaagccggcgggcgtgttct 454 |||||| ||||||||||||||||| Sbjct: 353948 ccggcatgccggcgggcgtgttct 353971
>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence Length = 410554 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 gatgaaggcgttcttcgacg 397 |||||||||||||||||||| Sbjct: 33837 gatgaaggcgttcttcgacg 33856
>ref|XM_603109.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 6 (LOC524776), mRNA Length = 9060 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gggagcagagcctggccggc 435 |||||||||||||||||||| Sbjct: 6287 gggagcagagcctggccggc 6306
>ref|XM_323136.1| Neurospora crassa OR74A hypothetical protein (NCU03836.1) partial mRNA Length = 1065 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 tggcggcgcagatgaaggcg 387 |||||||||||||||||||| Sbjct: 680 tggcggcgcagatgaaggcg 699
>ref|XM_955502.1| Neurospora crassa OR74A hypothetical protein (NCU03836.1) partial mRNA Length = 1065 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 tggcggcgcagatgaaggcg 387 |||||||||||||||||||| Sbjct: 680 tggcggcgcagatgaaggcg 699
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 gcacccagggcggcgggcag 483 |||||||||||||||||||| Sbjct: 596577 gcacccagggcggcgggcag 596596
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 426 cctggccggcaagccggcgggcgtgttc 453 |||||||||||| ||||| ||||||||| Sbjct: 1097709 cctggccggcaaaccggctggcgtgttc 1097682
>ref|XM_385461.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05285.1) partial mRNA Length = 966 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 gatggcggcgcagatgaagg 385 |||||||||||||||||||| Sbjct: 339 gatggcggcgcagatgaagg 320
>emb|AL357055.18| Human DNA sequence from clone RP11-389O22 on chromosome 1 Contains the 3' end of a novel gene, the 5' end of a novel gene, the LRIG2 gene for leucine-rich repeats and immunoglobulin-like domains 2, a ring finger protein 12 (RNF12) pseudogene, a ribosomal protein S19 (RPS19) pseudogene, a ribosomal protein S15 (RPS15) pseudogene and a CpG island, complete sequence Length = 188812 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 9 ccactgcctccgctcccttcccttcccc 36 |||| |||||| |||||||||||||||| Sbjct: 39140 ccacagcctcccctcccttcccttcccc 39167
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 399 gacgggcgggctgtggagggagcagagcctggccggcaag 438 ||||||||||||||||| | || |||||||| ||||||| Sbjct: 1356673 gacgggcgggctgtggatgaaggggagcctggtcggcaag 1356634
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggccggcaagccggcgggcg 448 |||||||||||||||||||| Sbjct: 302660 ggccggcaagccggcgggcg 302641
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 agagcctggccggcaagccggcgg 445 ||||||||| |||||||||||||| Sbjct: 6525358 agagcctggacggcaagccggcgg 6525335
>gb|AE012469.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 377 of 460 of the complete genome Length = 10901 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gcatgatggcggcgcagatg 381 |||||||||||||||||||| Sbjct: 7674 gcatgatggcggcgcagatg 7693
>gb|AC123710.12| Mus musculus chromosome 5, clone RP23-378C15, complete sequence Length = 175744 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 cctccgctcccttcccttccccct 38 ||||| |||||||||||||||||| Sbjct: 37232 cctcccctcccttcccttccccct 37209
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcatgatggcggcgcagatg 381 |||||||||||||||||||| Sbjct: 796180 gcatgatggcggcgcagatg 796161
>gb|U44091.1|RNU44091 Rattus norvegicus atrophin-1 related protein (rARP) mRNA, complete cds Length = 6659 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 gggctgtggagggagcagag 425 |||||||||||||||||||| Sbjct: 3649 gggctgtggagggagcagag 3630
>tpg|BK004881.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 12 (GRF12) gene, complete cds Length = 5220 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tcctcctcctcctaccagat 83 |||||||||||||||||||| Sbjct: 4085 tcctcctcctcctaccagat 4104
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 12 ctgcctccgctcccttcccttccccctc 39 ||||||||||| ||||||| |||||||| Sbjct: 25137988 ctgcctccgctgccttcccctccccctc 25137961
>gb|AF319592.1|AF319592 Pseudomonas putida plasmid pNB2 transposon-like transposase (tnpA) and hydroxylaminobenzene mutase (nbzB) genes, complete cds Length = 2631 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 308 ctcaggagctggcggaggccgacggcgt 335 ||||||| |||||| ||||||||||||| Sbjct: 2311 ctcaggatctggcgcaggccgacggcgt 2284
>dbj|AB121692.1| Mus musculus peptidylarginine deiminase gene cluster (Padi2, Padi1, Padi23, Padi4, Padi6), complete cds Length = 240498 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 aggtccctgagatcctgaac 249 |||||||||||||||||||| Sbjct: 213112 aggtccctgagatcctgaac 213131
>gb|AF323753.1|AF323753 Streptomyces nogalater nogalamycin biosynthetic gene cluster, complete sequence Length = 12637 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 gggcacccagggcggcgggcagga 485 |||||||||||||||||| ||||| Sbjct: 7380 gggcacccagggcggcggccagga 7403
>gb|AC025160.29| Homo sapiens 12 BAC RP11-526P6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159691 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 tgtactactccatgtatggt 156 |||||||||||||||||||| Sbjct: 91378 tgtactactccatgtatggt 91359
>gb|AF028594.1|AF028594 Pseudomonas pseudoalcaligenes hydroxylaminobenzene mutase (habA) and (habB) genes, and Tn5501 resolvase (tnpR) gene, complete cds; and Tn5501 transposase (tnpA) gene, partial cds Length = 8134 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 308 ctcaggagctggcggaggccgacggcgt 335 ||||||| |||||| ||||||||||||| Sbjct: 3809 ctcaggatctggcgcaggccgacggcgt 3782
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 gatggcggcgcagatgaaggcgtt 389 |||| ||||||||||||||||||| Sbjct: 6144651 gatgacggcgcagatgaaggcgtt 6144628
>dbj|AP007205.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0048L03 Length = 142377 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 12 ctgcctccgctcccttcccttccccctc 39 ||||||||||| ||||||| |||||||| Sbjct: 84174 ctgcctccgctgccttcccctccccctc 84147
>dbj|AK121410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132O07, full insert sequence Length = 2278 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tcctcctcctcctaccagat 83 |||||||||||||||||||| Sbjct: 118 tcctcctcctcctaccagat 137
>dbj|AP003463.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-651D13, complete sequence Length = 91059 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gctcccttcccttccccctc 39 |||||||||||||||||||| Sbjct: 33167 gctcccttcccttccccctc 33148
>gb|AC173344.2| Mus musculus BAC clone RP23-222L16 from chromosome 17, complete sequence Length = 191106 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 ctccgctcccttcccttccccctc 39 |||| ||||||||||||||||||| Sbjct: 21255 ctcccctcccttcccttccccctc 21232
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tcctcctcctcctaccagat 83 |||||||||||||||||||| Sbjct: 110406 tcctcctcctcctaccagat 110425
>emb|AL807805.7| Mouse DNA sequence from clone RP23-48K5 on chromosome 4, complete sequence Length = 183495 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 aggtccctgagatcctgaac 249 |||||||||||||||||||| Sbjct: 12581 aggtccctgagatcctgaac 12562
>dbj|AP003971.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-850O8, complete sequence Length = 147440 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 gtggagggagcagagcctgg 430 |||||||||||||||||||| Sbjct: 65059 gtggagggagcagagcctgg 65040 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,357,153 Number of Sequences: 3902068 Number of extensions: 4357153 Number of successful extensions: 152838 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 150983 Number of HSP's gapped (non-prelim): 1848 length of query: 489 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 467 effective length of database: 17,147,199,772 effective search space: 8007742293524 effective search space used: 8007742293524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)