ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart43c05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 605 bits (305), Expect = e-170 Identities = 431/473 (91%) Strand = Plus / Minus Query: 50 ttcaagcccgtagaggattgcagctccgaggggaggtcggagcagacggtggccgccgac 109 ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct: 36859531 ttcaagcccgtggaggagtgcagctcggatgggaggtcggagcagacggtggccgccgac 36859472 Query: 110 ttcgacggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctg 169 ||||||||||||||| || |||| | ||||||||| ||||||||||| || ||||| Sbjct: 36859471 ttcgacggcacgctggtcaggtcgcggagcgccttcccgtactacctcctcgtcgcgctc 36859412 Query: 170 gaggccggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtg 229 |||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| |||||| Sbjct: 36859411 gaggccggcagcgtgctccgcgccgtcgtgctgctgctgtccgtgccgttcgtctacgtg 36859352 Query: 230 acctacatcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggcc 289 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 36859351 acctacattttcttctccgagtcgctggccatcagcacgctggtgtacatctccgtggcg 36859292 Query: 290 gggctcaaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaagttctacgcg 349 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 36859291 gggctcaaggtgaggaacatcgagatggtggcgcggtcggtgctgcccaagttctacgcg 36859232 Query: 350 caggatgtccacccggagagctggagggtgttcaggtccttcggcaagcggtacatcatc 409 |||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 36859231 gaggacgtgcacccggagagctggagggtgttcaactccttcggcaagcggtacatcatc 36859172 Query: 410 acggccagccccaggatcatggtggagcccttcgccagggagttcctcggtgccgacagg 469 ||||| |||||||||||||||||||||| |||||||| | ||||||||| ||||||| | Sbjct: 36859171 acggcgagccccaggatcatggtggagcacttcgccaagacgttcctcggcgccgacaag 36859112 Query: 470 gtggtgggcacggagctggaggtcggcaagtccggcaaggccacggggttcat 522 ||||| || ||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 36859111 gtggtcgggacggagctggaggtcggcaagaacggcaaggccacggggttcat 36859059
>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1096A10 Length = 150976 Score = 605 bits (305), Expect = e-170 Identities = 431/473 (91%) Strand = Plus / Minus Query: 50 ttcaagcccgtagaggattgcagctccgaggggaggtcggagcagacggtggccgccgac 109 ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct: 75109 ttcaagcccgtggaggagtgcagctcggatgggaggtcggagcagacggtggccgccgac 75050 Query: 110 ttcgacggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctg 169 ||||||||||||||| || |||| | ||||||||| ||||||||||| || ||||| Sbjct: 75049 ttcgacggcacgctggtcaggtcgcggagcgccttcccgtactacctcctcgtcgcgctc 74990 Query: 170 gaggccggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtg 229 |||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| |||||| Sbjct: 74989 gaggccggcagcgtgctccgcgccgtcgtgctgctgctgtccgtgccgttcgtctacgtg 74930 Query: 230 acctacatcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggcc 289 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 74929 acctacattttcttctccgagtcgctggccatcagcacgctggtgtacatctccgtggcg 74870 Query: 290 gggctcaaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaagttctacgcg 349 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 74869 gggctcaaggtgaggaacatcgagatggtggcgcggtcggtgctgcccaagttctacgcg 74810 Query: 350 caggatgtccacccggagagctggagggtgttcaggtccttcggcaagcggtacatcatc 409 |||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 74809 gaggacgtgcacccggagagctggagggtgttcaactccttcggcaagcggtacatcatc 74750 Query: 410 acggccagccccaggatcatggtggagcccttcgccagggagttcctcggtgccgacagg 469 ||||| |||||||||||||||||||||| |||||||| | ||||||||| ||||||| | Sbjct: 74749 acggcgagccccaggatcatggtggagcacttcgccaagacgttcctcggcgccgacaag 74690 Query: 470 gtggtgggcacggagctggaggtcggcaagtccggcaaggccacggggttcat 522 ||||| || ||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 74689 gtggtcgggacggagctggaggtcggcaagaacggcaaggccacggggttcat 74637
>dbj|AK105944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C03, full insert sequence Length = 1715 Score = 605 bits (305), Expect = e-170 Identities = 431/473 (91%) Strand = Plus / Plus Query: 50 ttcaagcccgtagaggattgcagctccgaggggaggtcggagcagacggtggccgccgac 109 ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct: 104 ttcaagcccgtggaggagtgcagctcggatgggaggtcggagcagacggtggccgccgac 163 Query: 110 ttcgacggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctg 169 ||||||||||||||| || |||| | ||||||||| ||||||||||| || ||||| Sbjct: 164 ttcgacggcacgctggtcaggtcgcggagcgccttcccgtactacctcctcgtcgcgctc 223 Query: 170 gaggccggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtg 229 |||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| |||||| Sbjct: 224 gaggccggcagcgtgctccgcgccgtcgtgctgctgctgtccgtgccgttcgtctacgtg 283 Query: 230 acctacatcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggcc 289 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 284 acctacattttcttctccgagtcgctggccatcagcacgctggtgtacatctccgtggcg 343 Query: 290 gggctcaaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaagttctacgcg 349 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 344 gggctcaaggtgaggaacatcgagatggtggcgcggtcggtgctgcccaagttctacgcg 403 Query: 350 caggatgtccacccggagagctggagggtgttcaggtccttcggcaagcggtacatcatc 409 |||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 404 gaggacgtgcacccggagagctggagggtgttcaactccttcggcaagcggtacatcatc 463 Query: 410 acggccagccccaggatcatggtggagcccttcgccagggagttcctcggtgccgacagg 469 ||||| |||||||||||||||||||||| |||||||| | ||||||||| ||||||| | Sbjct: 464 acggcgagccccaggatcatggtggagcacttcgccaagacgttcctcggcgccgacaag 523 Query: 470 gtggtgggcacggagctggaggtcggcaagtccggcaaggccacggggttcat 522 ||||| || ||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 524 gtggtcgggacggagctggaggtcggcaagaacggcaaggccacggggttcat 576
>dbj|AK070880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064I03, full insert sequence Length = 3618 Score = 605 bits (305), Expect = e-170 Identities = 431/473 (91%) Strand = Plus / Plus Query: 50 ttcaagcccgtagaggattgcagctccgaggggaggtcggagcagacggtggccgccgac 109 ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct: 1970 ttcaagcccgtggaggagtgcagctcggatgggaggtcggagcagacggtggccgccgac 2029 Query: 110 ttcgacggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctg 169 ||||||||||||||| || |||| | ||||||||| ||||||||||| || ||||| Sbjct: 2030 ttcgacggcacgctggtcaggtcgcggagcgccttcccgtactacctcctcgtcgcgctc 2089 Query: 170 gaggccggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtg 229 |||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| |||||| Sbjct: 2090 gaggccggcagcgtgctccgcgccgtcgtgctgctgctgtccgtgccgttcgtctacgtg 2149 Query: 230 acctacatcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggcc 289 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 2150 acctacattttcttctccgagtcgctggccatcagcacgctggtgtacatctccgtggcg 2209 Query: 290 gggctcaaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaagttctacgcg 349 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2210 gggctcaaggtgaggaacatcgagatggtggcgcggtcggtgctgcccaagttctacgcg 2269 Query: 350 caggatgtccacccggagagctggagggtgttcaggtccttcggcaagcggtacatcatc 409 |||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2270 gaggacgtgcacccggagagctggagggtgttcaactccttcggcaagcggtacatcatc 2329 Query: 410 acggccagccccaggatcatggtggagcccttcgccagggagttcctcggtgccgacagg 469 ||||| |||||||||||||||||||||| |||||||| | ||||||||| ||||||| | Sbjct: 2330 acggcgagccccaggatcatggtggagcacttcgccaagacgttcctcggcgccgacaag 2389 Query: 470 gtggtgggcacggagctggaggtcggcaagtccggcaaggccacggggttcat 522 ||||| || ||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2390 gtggtcgggacggagctggaggtcggcaagaacggcaaggccacggggttcat 2442
>gb|AY105347.1| Zea mays PCO089398 mRNA sequence Length = 2225 Score = 458 bits (231), Expect = e-126 Identities = 423/487 (86%) Strand = Plus / Plus Query: 36 tggcgtctctgaaattcaagcccgtagaggattgcagctccgaggggaggtcggagcaga 95 ||||||||| | |||||||||| | ||||| ||| |||| |||||| |||||||||||| Sbjct: 354 tggcgtctcccagattcaagcccatcgaggagtgctgctcggaggggcggtcggagcaga 413 Query: 96 cggtggccgccgacttcgacggcacgctgctccggtcctccaacgccttcccctactacc 155 |||||||||||||| | ||||||||||||||| ||| | ||| ||||||||||||| Sbjct: 414 cggtggccgccgacctggacggcacgctgctcatctccaggagcgcgttcccctactacc 473 Query: 156 tcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctgctcctgtcggtgc 215 |||| ||||| || ||||||||||||||||||||||||| | |||||||||||| |||| Sbjct: 474 tcctcgtggctctcgaggccggcagcgtcctccgcgccgcgctgctgctcctgtccgtgc 533 Query: 216 cgttcgtgtacgtgacctacatcttcttctccgagtcgctggccatcagcaccctggtgt 275 ||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 534 cgttcgtctacgtcacctacgccttcttctccgagtcgctggccatcagcacgctggtgt 593 Query: 276 acatctccgtggccgggctcaaggtgaggagcatcgagatggcggcgcggtcggtgctgc 335 ||||||||||||| |||||||||||| | ||||||||||||| |||||| || ||||| | Sbjct: 594 acatctccgtggcggggctcaaggtgcgcagcatcgagatggtggcgcgctccgtgctcc 653 Query: 336 ccaagttctacgcgcaggatgtccacccggagagctggagggtgttcaggtccttcggca 395 ||| |||||||||| || || |||||||||||||||||||||||||| |||||||||| Sbjct: 654 ccaggttctacgcgggcgacgtgcacccggagagctggagggtgttcagctccttcggca 713 Query: 396 agcggtacatcatcacggccagccccaggatcatggtggagcccttcgccagggagttcc 455 ||| ||| || ||||||||||||||||| ||||||| |||||||||||||||| |||| Sbjct: 714 ggcgctacgtcgtcacggccagccccagggtcatggtcgagcccttcgccagggccttcc 773 Query: 456 tcggtgccgacagggtggtgggcacggagctggaggtcggcaagtccggcaaggccacgg 515 | || ||||||| ||| || || || |||||||||||||||| | |||||||||||||| Sbjct: 774 taggcgccgacaaggtcgtcgggaccgagctggaggtcggcagggacggcaaggccacgg 833 Query: 516 ggttcat 522 | ||||| Sbjct: 834 gcttcat 840
>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21, complete sequence Length = 135750 Score = 248 bits (125), Expect = 2e-62 Identities = 359/437 (82%) Strand = Plus / Plus Query: 77 gaggggaggtcggagcagacggtggccgccgacttcgacggcacgctgctccggtcctcc 136 |||||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||| | Sbjct: 112572 gaggggcggtcgcagcagacggtggcctccgacctcgacggcacgctgctcctgtcccgc 112631 Query: 137 aacgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtg 196 | ||||||||| ||||||||||| || ||||| ||||||||| || ||||||||| || Sbjct: 112632 agcgccttcccgtactacctcctcgtcgcgctcgaggccggcggccccctccgcgcggtc 112691 Query: 197 gcgctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctg 256 ||||||||| |||| ||||| ||||| ||| | || ||| || | |||||||||| || Sbjct: 112692 gcgctgctcatgtccgtgcccttcgtctacctcacgtacgtcaccatctccgagtccctc 112751 Query: 257 gccatcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatg 316 ||| | || | ||| |||||||| ||||||| || ||| |||||||| | ||||| | Sbjct: 112752 gccgtgcgcgcgctgctgtacatcgccgtggcgggtctcgaggtgagggacgtcgagtcg 112811 Query: 317 gcggcgcggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagg 376 | |||||||||||||||||||| ||||||||| || |||||||||||| | ||| || Sbjct: 112812 gtggcgcggtcggtgctgcccaggttctacgccggcgacgtccacccggaggggtggcgg 112871 Query: 377 gtgttcaggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggag 436 |||||||| || ||||||| | ||| | || | ||||| ||||||||| | ||||||||| Sbjct: 112872 gtgttcagctcgttcggcaggaggtgcgtcgtgacggcgagccccagggtgatggtggag 112931 Query: 437 cccttcgccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggc 496 || ||||| |||| ||||||||| || |||||||| | ||||||||||||||||||||| Sbjct: 112932 ccgttcgcgagggcgttcctcggcgcggacagggtcatcggcacggagctggaggtcggc 112991 Query: 497 aagtccggcaaggccac 513 || ||||| |||||| Sbjct: 112992 gaggacggcagggccac 113008
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 248 bits (125), Expect = 2e-62 Identities = 359/437 (82%) Strand = Plus / Plus Query: 77 gaggggaggtcggagcagacggtggccgccgacttcgacggcacgctgctccggtcctcc 136 |||||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||| | Sbjct: 21860163 gaggggcggtcgcagcagacggtggcctccgacctcgacggcacgctgctcctgtcccgc 21860222 Query: 137 aacgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtg 196 | ||||||||| ||||||||||| || ||||| ||||||||| || ||||||||| || Sbjct: 21860223 agcgccttcccgtactacctcctcgtcgcgctcgaggccggcggccccctccgcgcggtc 21860282 Query: 197 gcgctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctg 256 ||||||||| |||| ||||| ||||| ||| | || ||| || | |||||||||| || Sbjct: 21860283 gcgctgctcatgtccgtgcccttcgtctacctcacgtacgtcaccatctccgagtccctc 21860342 Query: 257 gccatcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatg 316 ||| | || | ||| |||||||| ||||||| || ||| |||||||| | ||||| | Sbjct: 21860343 gccgtgcgcgcgctgctgtacatcgccgtggcgggtctcgaggtgagggacgtcgagtcg 21860402 Query: 317 gcggcgcggtcggtgctgcccaagttctacgcgcaggatgtccacccggagagctggagg 376 | |||||||||||||||||||| ||||||||| || |||||||||||| | ||| || Sbjct: 21860403 gtggcgcggtcggtgctgcccaggttctacgccggcgacgtccacccggaggggtggcgg 21860462 Query: 377 gtgttcaggtccttcggcaagcggtacatcatcacggccagccccaggatcatggtggag 436 |||||||| || ||||||| | ||| | || | ||||| ||||||||| | ||||||||| Sbjct: 21860463 gtgttcagctcgttcggcaggaggtgcgtcgtgacggcgagccccagggtgatggtggag 21860522 Query: 437 cccttcgccagggagttcctcggtgccgacagggtggtgggcacggagctggaggtcggc 496 || ||||| |||| ||||||||| || |||||||| | ||||||||||||||||||||| Sbjct: 21860523 ccgttcgcgagggcgttcctcggcgcggacagggtcatcggcacggagctggaggtcggc 21860582 Query: 497 aagtccggcaaggccac 513 || ||||| |||||| Sbjct: 21860583 gaggacggcagggccac 21860599
>ref|XM_463861.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1521 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 143 ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 202 ||||| |||||| |||| ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 130 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 189 Query: 203 ct 204 || Sbjct: 190 ct 191
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 143 ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 202 ||||| |||||| |||| ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 778139 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 778080 Query: 203 ct 204 || Sbjct: 778079 ct 778078
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 143 ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 202 ||||| |||||| |||| ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 56270 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 56211 Query: 203 ct 204 || Sbjct: 56210 ct 56209
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1399_H05 Length = 147670 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 143 ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 202 ||||| |||||| |||| ||||| || |||||||||||| ||||||||| |||||||| Sbjct: 135034 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 134975 Query: 203 ct 204 || Sbjct: 134974 ct 134973
>ref|NM_197382.1| Oryza sativa (japonica cultivar-group) putative transporter (OSJNBb0018B10.4), mRNA Length = 1697 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 484 gctggaggtcggcaagtccggcaagg 509 ||||||| |||||||||||||||||| Sbjct: 54 gctggagctcggcaagtccggcaagg 79
>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete sequence Length = 135789 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 484 gctggaggtcggcaagtccggcaagg 509 ||||||| |||||||||||||||||| Sbjct: 29886 gctggagctcggcaagtccggcaagg 29911
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 484 gctggaggtcggcaagtccggcaagg 509 ||||||| |||||||||||||||||| Sbjct: 19572695 gctggagctcggcaagtccggcaagg 19572720 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 cggtgccgttcgtgtacgtg 229 |||||||||||||||||||| Sbjct: 17911289 cggtgccgttcgtgtacgtg 17911308
>dbj|AK103488.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130M19, full insert sequence Length = 1779 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 484 gctggaggtcggcaagtccggcaagg 509 ||||||| |||||||||||||||||| Sbjct: 136 gctggagctcggcaagtccggcaagg 161
>gb|DQ180314.1| Fragaria x ananassa clone PBCESTFXA9 SSR marker Length = 883 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 389 ttcggcaagcggtacatcatcacggc 414 ||||||||||| |||||||||||||| Sbjct: 471 ttcggcaagcgctacatcatcacggc 496 Score = 40.1 bits (20), Expect = 7.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 92 cagacggtggccgccgacttcgacggcacgct 123 ||||||||||| || ||| ||||||||||||| Sbjct: 174 cagacggtggctgcagacctcgacggcacgct 205
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 484 gctggaggtcggcaagtccggcaagg 509 ||||||| |||||||||||||||||| Sbjct: 19583971 gctggagctcggcaagtccggcaagg 19583996 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 cggtgccgttcgtgtacgtg 229 |||||||||||||||||||| Sbjct: 17920542 cggtgccgttcgtgtacgtg 17920561
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 105 ccgacttcgacggcacgctgctccg 129 ||||| ||||||||||||||||||| Sbjct: 3584297 ccgacctcgacggcacgctgctccg 3584273 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 cgccgacttcgacggcacgctgct 126 ||||||| |||||||||||||||| Sbjct: 29861312 cgccgacctcgacggcacgctgct 29861289
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 157 cctggtggcgctggaggccggcagc 181 ||||||||||||||||| ||||||| Sbjct: 245083 cctggtggcgctggagggcggcagc 245059
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 ctggccatcagcaccctggtg 274 ||||||||||||||||||||| Sbjct: 4451238 ctggccatcagcaccctggtg 4451218
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 105 ccgacttcgacggcacgctgctccg 129 ||||| ||||||||||||||||||| Sbjct: 3584408 ccgacctcgacggcacgctgctccg 3584384 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 cgccgacttcgacggcacgctgct 126 ||||||| |||||||||||||||| Sbjct: 29952734 cgccgacctcgacggcacgctgct 29952711
>emb|BX817236.1|CNS0ABN7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH94ZF05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1340 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ctcctggtggcgctggaggcc 175 ||||||||||||||||||||| Sbjct: 772 ctcctggtggcgctggaggcc 792
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 105 ccgacttcgacggcacgctgctccg 129 ||||| ||||||||||||||||||| Sbjct: 101950 ccgacctcgacggcacgctgctccg 101926
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 cggtggccgccgacttcgacg 116 ||||||||||||||||||||| Sbjct: 529446 cggtggccgccgacttcgacg 529466
>ref|XM_475002.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1242 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 agaggcaatggcgtctctga 47 |||||||||||||||||||| Sbjct: 597 agaggcaatggcgtctctga 578
>ref|NM_197089.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029C15.14), mRNA Length = 642 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 cggtgccgttcgtgtacgtg 229 |||||||||||||||||||| Sbjct: 301 cggtgccgttcgtgtacgtg 282
>gb|AY743675.1| Bos taurus alpha-1 type II collagen (COL2A1) gene, complete sequence Length = 30941 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gctggccatcagcaccctgg 272 |||||||||||||||||||| Sbjct: 23233 gctggccatcagcaccctgg 23214
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tggccgccgacttcgacggc 118 |||||||||||||||||||| Sbjct: 580615 tggccgccgacttcgacggc 580634
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gagcatcgagatggcggcgc 323 |||||||||||||||||||| Sbjct: 451615 gagcatcgagatggcggcgc 451634
>gb|AC117196.3| Mus musculus BAC clone RP23-108H19 from 8, complete sequence Length = 185947 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 ggagttcctcggtgccgaca 467 |||||||||||||||||||| Sbjct: 102742 ggagttcctcggtgccgaca 102761
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 cgccgacttcgacggcacgctgct 126 ||||||| |||||||||||||||| Sbjct: 149293 cgccgacctcgacggcacgctgct 149316
>emb|AJ697714.1| Pseudomonas aeruginosa partial aph gene for acid phosphatase, allele 6 Length = 348 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gacggtggccgccgacttcg 113 |||||||||||||||||||| Sbjct: 308 gacggtggccgccgacttcg 327
>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete sequence Length = 148816 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 cggtgccgttcgtgtacgtg 229 |||||||||||||||||||| Sbjct: 20752 cggtgccgttcgtgtacgtg 20733
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete sequence Length = 139946 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 cgccgacttcgacggcacgctgct 126 ||||||| |||||||||||||||| Sbjct: 27253 cgccgacctcgacggcacgctgct 27230
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gtggccgccgacttcgacgg 117 |||||||||||||||||||| Sbjct: 2877571 gtggccgccgacttcgacgg 2877590
>gb|AC074046.9|AC074046 Mus musculus 5 BAC RP23-440C1 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 182534 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 attgcagctccgaggggagg 85 |||||||||||||||||||| Sbjct: 18579 attgcagctccgaggggagg 18598
>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence Length = 256992 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 ctccgtggccgggctcaagg 299 |||||||||||||||||||| Sbjct: 8520 ctccgtggccgggctcaagg 8501
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 443 gccagggagttcctcggtgccgac 466 ||||| |||||||||||||||||| Sbjct: 1975836 gccagcgagttcctcggtgccgac 1975813
>gb|U22894.1|SLU22894 Streptomyces lividans amplifiable element AUD1 Length = 20996 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 gtggcgctgctcctgtcggtgccg 217 ||||||||||||||| |||||||| Sbjct: 883 gtggcgctgctcctgccggtgccg 906
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 ctccgtggccgggctcaagg 299 |||||||||||||||||||| Sbjct: 222908 ctccgtggccgggctcaagg 222889
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ggcgctggaggccggcagcg 182 |||||||||||||||||||| Sbjct: 2542534 ggcgctggaggccggcagcg 2542515 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,498,132 Number of Sequences: 3902068 Number of extensions: 3498132 Number of successful extensions: 66925 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65596 Number of HSP's gapped (non-prelim): 1321 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
