ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart43c04 |
|---|---|
| Clone Library Name | barley_pub |
>PP2C3_ARATH (P49599) Protein phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C)| Length = 388 Score = 37.0 bits (84), Expect = 0.043 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%) Frame = +2 Query: 320 LRYGHA---GFAKRGEDYFLVKPDCLRVPGDPSTAFSVFAVFDGHNGVSAAVFSKEHLLE 490 +R+G+ GF ED +++ D + +FS AVFDGH G S+ F +E L + Sbjct: 58 IRWGYTSVQGFRDEMEDDIVIRSDAV-------DSFSYAAVFDGHAGSSSVKFLREELYK 110 Query: 491 HVMSALPPDIGGREEWLQALPRALVAGFVKAD 586 + AL A+ AL+ F D Sbjct: 111 ECVGALQAGSLLNGGDFAAIKEALIKAFESVD 142
>PP2C1_ARATH (P49597) Protein phosphatase 2C ABI1 (EC 3.1.3.16) (PP2C) (Abscisic| acid-insensitive 1) Length = 434 Score = 36.6 bits (83), Expect = 0.056 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = +2 Query: 401 DPSTAFSVFAVFDGHNGVSAAVFSKEHL---LEHVMSALPPDIGGREEWLQALPRALVAG 571 DP +A F V+DGH G A + +E + L ++ P + + WL+ +AL Sbjct: 165 DPQSAAHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNS 224 Query: 572 FVKAD 586 F++ D Sbjct: 225 FLRVD 229
>PP2CB_MOUSE (P36993) Protein phosphatase 2C isoform beta (EC 3.1.3.16)| (PP2C-beta) (IA) (Protein phosphatase 1B) Length = 390 Score = 35.8 bits (81), Expect = 0.096 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Frame = +2 Query: 416 FSVFAVFDGHNGVSAAVFSKEHLLEHVMS-----ALPPDIGGREEWLQALPRALVAGFVK 580 +S FAV+DGH G A + HLLEH+ + A E ++++ + GF+K Sbjct: 53 WSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAADKSGSALEPSVESVKTGIRTGFLK 112 Query: 581 AD 586 D Sbjct: 113 ID 114
>PP2CB_BOVIN (O62830) Protein phosphatase 2C isoform beta (EC 3.1.3.16)| (PP2C-beta) Length = 387 Score = 35.0 bits (79), Expect = 0.16 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Frame = +2 Query: 416 FSVFAVFDGHNGVSAAVFSKEHLLEHVMSALPPDIGGR-----EEWLQALPRALVAGFVK 580 +S FAV+DGH G A + HLLEH+ + G+ E ++ + + GF+K Sbjct: 53 WSFFAVYDGHAGSRVANYCSTHLLEHITNNEDFRAAGKSGSALEPSVENVKNGIRTGFLK 112 Query: 581 AD 586 D Sbjct: 113 ID 114
>PP2CA_HUMAN (P35813) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 35.0 bits (79), Expect = 0.16 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +2 Query: 413 AFSVFAVFDGHNGVSAAVFSKEHLLEHV 496 ++S FAV+DGH G A + EHLL+H+ Sbjct: 52 SWSFFAVYDGHAGSQVAKYCCEHLLDHI 79
>PP2CA_RAT (P20650) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 34.7 bits (78), Expect = 0.21 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = +2 Query: 416 FSVFAVFDGHNGVSAAVFSKEHLLEHV 496 +S FAV+DGH G A + EHLL+H+ Sbjct: 53 WSFFAVYDGHAGSQVAKYCCEHLLDHI 79
>PP2CA_RABIT (P35814) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 34.7 bits (78), Expect = 0.21 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = +2 Query: 416 FSVFAVFDGHNGVSAAVFSKEHLLEHV 496 +S FAV+DGH G A + EHLL+H+ Sbjct: 53 WSFFAVYDGHAGSQVAKYCCEHLLDHI 79
>PP2CA_MOUSE (P49443) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) (IA) (Protein phosphatase 1A) Length = 382 Score = 34.7 bits (78), Expect = 0.21 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = +2 Query: 416 FSVFAVFDGHNGVSAAVFSKEHLLEHV 496 +S FAV+DGH G A + EHLL+H+ Sbjct: 53 WSFFAVYDGHAGSQVAKYCCEHLLDHI 79
>PP2CA_BOVIN (O62829) Protein phosphatase 2C isoform alpha (EC 3.1.3.16)| (PP2C-alpha) Length = 382 Score = 34.7 bits (78), Expect = 0.21 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = +2 Query: 416 FSVFAVFDGHNGVSAAVFSKEHLLEHV 496 +S FAV+DGH G A + EHLL+H+ Sbjct: 53 WSFFAVYDGHAGSQVAKYCCEHLLDHI 79
>PP2CB_HUMAN (O75688) Protein phosphatase 2C isoform beta (EC 3.1.3.16)| (PP2C-beta) Length = 479 Score = 34.3 bits (77), Expect = 0.28 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Frame = +2 Query: 416 FSVFAVFDGHNGVSAAVFSKEHLLEHVMSALPPDIGGR-----EEWLQALPRALVAGFVK 580 +S FAV+DGH G A + HLLEH+ + G+ E ++ + + GF+K Sbjct: 53 WSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLK 112 Query: 581 AD 586 D Sbjct: 113 ID 114
>PP2CB_RAT (P35815) Protein phosphatase 2C isoform beta (EC 3.1.3.16)| (PP2C-beta) (IA) (Protein phosphatase 1B) Length = 390 Score = 33.9 bits (76), Expect = 0.36 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +2 Query: 416 FSVFAVFDGHNGVSAAVFSKEHLLEHV 496 +S FAV+DGH G A + HLLEH+ Sbjct: 53 WSFFAVYDGHAGSRVANYCSTHLLEHI 79
>PP2C2_SCHPO (Q09172) Protein phosphatase 2C homolog 2 (EC 3.1.3.16) (PP2C-2)| Length = 370 Score = 33.5 bits (75), Expect = 0.48 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +2 Query: 401 DPSTAFSVFAVFDGHNGVSAAVFSKEHLLEHVMSALPPDIGGREEWLQALPRALVAGFVK 580 +P T+F F VFDGH G A + ++HL + + S P W AL +GF+ Sbjct: 53 NPPTSF--FGVFDGHGGDRVAKYCRQHLPDIIKS--QPSF-----WKGNYDEALKSGFLA 103 Query: 581 AD 586 AD Sbjct: 104 AD 105
>PP2C2_YEAST (P39966) Protein phosphatase 2C homolog 2 (EC 3.1.3.16) (PP2C-2)| Length = 464 Score = 33.1 bits (74), Expect = 0.62 Identities = 22/84 (26%), Positives = 36/84 (42%) Frame = +2 Query: 338 GFAKRGEDYFLVKPDCLRVPGDPSTAFSVFAVFDGHNGVSAAVFSKEHLLEHVMSALPPD 517 G+ ED +++P+ L AF + +FDGH G A + ++E + Sbjct: 31 GWRMSMEDSHILEPNVLTKSDKDHIAF--YGIFDGHGGAKVAEYCGNKIVEILQEQKSFH 88 Query: 518 IGGREEWLQALPRALVAGFVKADI 589 G LPRAL+ F+ D+ Sbjct: 89 EGN-------LPRALIDTFINTDV 105
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 33.1 bits (74), Expect = 0.62 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -3 Query: 471 LNTAADTPLWPSNTA--KTEKAVEGSPGTRRQSGLTRK*SSPRLAKPAWP*RSAGRSEPP 298 L++ TPL PS T+ + V GSP T R SG SS + P+ P G EPP Sbjct: 510 LSSQGPTPL-PSFTSGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAPSRPVTPGGAPEPP 568 Query: 297 ARSS 286 A S Sbjct: 569 APPS 572
>PP2C2_CAEEL (P49596) Probable protein phosphatase 2C T23F11.1 (EC 3.1.3.16)| (PP2C) Length = 356 Score = 32.7 bits (73), Expect = 0.81 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +2 Query: 386 LRVPGDPSTAFSVFAVFDGHNGVSAAVFSKEHLLEHVMSALPPDIGGREEWLQALPRALV 565 L +P DP AF FAV+DGH G + +S +L + V++ G +E A+ Sbjct: 44 LSLPDDPKCAF--FAVYDGHGGSKVSQYSGINLHKKVVAQKEFSEGNMKE-------AIE 94 Query: 566 AGFVKAD 586 GF++ D Sbjct: 95 KGFLELD 101
>HMEN_DROVI (P09145) Segmentation polarity homeobox protein engrailed| Length = 584 Score = 32.3 bits (72), Expect = 1.1 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 13/98 (13%) Frame = -3 Query: 585 SALTKPATSARGSACSHSSRPPMS-GGSALITCSSRCSLLNTAADT------------PL 445 S L P ++ S S SS S S+ CSS S LN++ + P+ Sbjct: 360 SQLASPPPASNASTISSSSSTAASCSASSSSGCSSAASSLNSSPSSRLAGANNASSPQPI 419 Query: 444 WPSNTAKTEKAVEGSPGTRRQSGLTRK*SSPRLAKPAW 331 P + + +E S TR ++G T PAW Sbjct: 420 PPPSAVSRDSGMESSDDTRSETGSTTTDGGKNEMWPAW 457
>PPM1F_HUMAN (P49593) Ca(2+)/calmodulin-dependent protein kinase phosphatase (EC| 3.1.3.16) (CaM-kinase phosphatase) (CaMKPase) (Partner of PIX 2) (hFEM-2) (Protein phosphatase 1F) Length = 454 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = +2 Query: 425 FAVFDGHNGVSAAVFSKEHLLEHVMSALPPDI 520 FAVFDGH GV AA ++ H+ H +A P++ Sbjct: 194 FAVFDGHGGVDAARYAAVHV--HTNAARQPEL 223
>CS021_MOUSE (Q9D279) Protein C19orf21 homolog| Length = 648 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Frame = +2 Query: 395 PGDPSTAFSVFAVFDGHNGVS-----AAVFSK-EHLLEHVMSALPPDIGGREEWLQALPR 556 PG P FS F V+ +GVS A VF K HV + + ++EW + + Sbjct: 399 PGTPKLEFSAFGVYSKPSGVSTEDTKATVFQKATESPRHVSESSGRSLSSKQEWSKPPGK 458 Query: 557 ALVAGFVK 580 A G V+ Sbjct: 459 ATNVGVVR 466
>PKN1_MYXXA (P33973) Serine/threonine-protein kinase pkn1 (EC 2.7.11.1)| Length = 693 Score = 31.2 bits (69), Expect = 2.4 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 6/83 (7%) Frame = -2 Query: 298 RAELAPDQRGQGQRRRKLSPLPLRAGHLXXXXASCPRSR---ARVCLPRATVHHSLPGK- 131 RA +APD +GQ R +L + RAGH+ AS + R A +PRA++ +P + Sbjct: 343 RAPVAPDMPTEGQSRGRLG-VDARAGHVPSSLASTSQRRLAPAAPAVPRASL-VEVPVQV 400 Query: 130 --RPGTETMAGRVGGSDLAGSGM 68 RPG + R+ GS L+ G+ Sbjct: 401 VLRPGESPV--RLRGSGLSRGGL 421
>PP2C_PARTE (P49444) Protein phosphatase 2C (EC 3.1.3.16) (PP2C)| Length = 300 Score = 31.2 bits (69), Expect = 2.4 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 419 SVFAVFDGHNGVSAAVFSKEHLLEHVM 499 SVF VFDGH G A F ++H ++ ++ Sbjct: 51 SVFGVFDGHGGREVAQFVEKHFVDELL 77
>PP2C2_ARATH (O04719) Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C) (Abscisic| acid-insensitive 2) Length = 423 Score = 31.2 bits (69), Expect = 2.4 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +2 Query: 401 DPSTAFSVFAVFDGHNGVSAAVFSKEH----LLEHVMSALPPDIGGREEWLQALPRALVA 568 +P + F V+DGH G A + +E L E ++ P G + W + +AL Sbjct: 153 NPHLSAHFFGVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDG-DTWQEKWKKALFN 211 Query: 569 GFVKAD 586 F++ D Sbjct: 212 SFMRVD 217
>PP2CD_HUMAN (O15297) Protein phosphatase 2C isoform delta (EC 3.1.3.16)| (PP2C-delta) (p53-induced protein phosphatase 1) (Protein phosphatase magnesium-dependent 1 delta) Length = 605 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +2 Query: 410 TAFSVFAVFDGHNGVSAAVFSKEHL 484 ++ + FAV DGH G AA F++EHL Sbjct: 96 SSVAFFAVCDGHGGREAAQFAREHL 120
>PPM1F_RAT (Q9WVR7) Ca(2+)/calmodulin-dependent protein kinase phosphatase (EC| 3.1.3.16) (CaM-kinase phosphatase) (CaMKPase) (Partner of PIX 2) (Protein phosphatase 1F) Length = 450 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = +2 Query: 425 FAVFDGHNGVSAAVFSKEHLLEHVMSALPPDI 520 FAVFDGH GV AA ++ H+ H ++ P++ Sbjct: 190 FAVFDGHGGVDAARYASVHV--HTNASHQPEL 219
>PPM1F_MOUSE (Q8CGA0) Ca(2+)/calmodulin-dependent protein kinase phosphatase (EC| 3.1.3.16) (CaM-kinase phosphatase) (CaMKPase) (Protein phosphatase 1F) Length = 452 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = +2 Query: 425 FAVFDGHNGVSAAVFSKEHLLEHVMSALPPDI 520 FAVFDGH GV AA ++ H+ H ++ P++ Sbjct: 191 FAVFDGHGGVDAARYASVHV--HTNASHQPEL 220
>PP2CD_MOUSE (Q9QZ67) Protein phosphatase 2C isoform delta (EC 3.1.3.16)| (PP2C-delta) (p53-induced protein phosphatase 1) (Protein phosphatase magnesium-dependent 1 delta) Length = 598 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +2 Query: 410 TAFSVFAVFDGHNGVSAAVFSKEHL 484 ++ + FAV DGH G AA F++EHL Sbjct: 89 SSVAFFAVCDGHGGREAAQFAREHL 113
>STP1_YEAST (Q00947) Zinc finger protein STP1| Length = 577 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = -3 Query: 519 MSGGSALITCSSRCSLLNTAADTPLWPSNTAKTEKAVEGSPGTR--RQSGLTRK*SSPRL 346 ++GG ++I CS S LNT L P N K+E + G+R + +G K S+ Sbjct: 134 LNGGCSVIPCSMDVSDLNTPISITLSPENRIKSEVNAKSLLGSRPEQDTGAPIKMSTGVT 193 Query: 345 AKPAWP 328 + P P Sbjct: 194 SSPLSP 199
>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)| Length = 825 Score = 30.4 bits (67), Expect = 4.0 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 7/111 (6%) Frame = -3 Query: 591 SMSALTKPATSARGSACSHSSRPPMSGGSALITCSSRCSLLNTAADTPLWPSNTAKTEKA 412 S S ++ A +A S+ + SS S S+ SS S + ++ + + A A Sbjct: 577 SASPSSQAAVAAASSSSASSSSASSSSASSSSASSSSASSSSASSSSASSSAGGAGGSVA 636 Query: 411 VEGSPGTRRQSGLTRK*SSPRLAKPAWP*RSA-------GRSEPPARSSRP 280 G RR++ L PR A P P + A G EP AR P Sbjct: 637 SASGAGERRETSL-----GPRAAAPRGPRKCARKTRHAEGGPEPGARDPAP 682
>PP2C3_YEAST (P34221) Protein phosphatase 2C homolog 3 (EC 3.1.3.16) (PP2C-3)| Length = 468 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 338 GFAKRGEDYFLVKPDCLRVPGDPSTAFSVFAVFDGHNGVSAAVF 469 G+ ED +V+P+ L + AF + +FDGH G S A F Sbjct: 31 GWRMSMEDAHIVEPNLLAESDEEHLAF--YGIFDGHGGSSVAEF 72
>PP2CL_MOUSE (Q8BHN0) Protein phosphatase 2C isoform epsilon (EC 3.1.3.16)| (PP2C-epsilon) (Protein phosphatase 1L) (Protein phosphatase 1-like) Length = 360 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/55 (36%), Positives = 24/55 (43%) Frame = +2 Query: 326 YGHAGFAKRGEDYFLVKPDCLRVPGDPSTAFSVFAVFDGHNGVSAAVFSKEHLLE 490 Y G ED F V D T S+F +FDGH G +AA + K L E Sbjct: 96 YSIQGRRDHMEDRFEVLTDLAN-----KTHPSIFGIFDGHGGETAAEYVKSRLPE 145
>PP2CL_HUMAN (Q5SGD2) Protein phosphatase 2C isoform epsilon (EC 3.1.3.16)| (PP2C-epsilon) (Protein phosphatase 1L) (Protein phosphatase 1-like) Length = 360 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/55 (36%), Positives = 24/55 (43%) Frame = +2 Query: 326 YGHAGFAKRGEDYFLVKPDCLRVPGDPSTAFSVFAVFDGHNGVSAAVFSKEHLLE 490 Y G ED F V D T S+F +FDGH G +AA + K L E Sbjct: 96 YSIQGRRDHMEDRFEVLTDLAN-----KTHPSIFGIFDGHGGETAAEYVKSRLPE 145
>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)| Length = 479 Score = 30.0 bits (66), Expect = 5.3 Identities = 24/59 (40%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Frame = +2 Query: 2 ARTTASQIPTRGLAVAPVLAGRHPTPSQIRP-----PDASRHCLRPRPFPRQGMVHCGP 163 A ASQ TRGL + P AGR P RP AS LR FPR GP Sbjct: 56 AAAAASQ--TRGLQLGPAAAGRLAGPIPARPSAAAAAAASYSALRAPLFPRSLAAAAGP 112
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -3 Query: 585 SALTKPATSARGSACSHSSRPPMSGGSALITCSSRCSLLNTAADTPLWPSNTA 427 S +T + + G + SSRP G+AL T SS+ + L+PS+ A Sbjct: 1275 SGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLGELLFPSSLA 1327
>TAOK2_HUMAN (Q9UL54) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1)| (Thousand and one amino acid protein 2) (Prostate-derived STE20-like kinase 1) (PSK-1) (Kinase from chicken homolog C) (hKFC-C) Length = 1235 Score = 29.3 bits (64), Expect = 9.0 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = -2 Query: 349 LGEAGVAVAQRRALGAPRAELAP-DQRGQGQRRRKLSPLPLRAGHL 215 LGE AV +RR LG A L P QR G+ SP P + G L Sbjct: 789 LGEEEEAVGERRILGKEGATLEPKQQRILGEESGAPSPSPQKHGSL 834
>ATG9A_PONPY (Q5RCS0) Autophagy-related protein 9A (APG9-like 1)| Length = 839 Score = 29.3 bits (64), Expect = 9.0 Identities = 27/88 (30%), Positives = 36/88 (40%) Frame = -2 Query: 292 ELAPDQRGQGQRRRKLSPLPLRAGHLXXXXASCPRSRARVCLPRATVHHSLPGKRPGTET 113 E APD+ G+G R + P AS P + R P T H +R G T Sbjct: 740 ESAPDEGGEGARAPQSIP----------RSASYPCAAPRPGAPETTALHGGFQRRYGGIT 789 Query: 112 MAGRVGGSDLAGSGMPAGEDRSDGEAAS 29 G V + S +P G DG++AS Sbjct: 790 DPGTVPRAPSHFSRLPLGGWAEDGQSAS 817
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -3 Query: 420 EKAVEGSPGTRRQSGLTRK*SSPRLAKPAWP*RSAGRSEPPARSSRP 280 EK G PG +SGL K P A P+ P +AG++ P R P Sbjct: 1768 EKGDRGPPGLDGRSGLDGK---PGAAGPSGPNGAAGKAGDPGRDGLP 1811
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -2 Query: 139 PGKR--PGTETMAGRVGGSDLAGSGMPAGEDRSDGEA 35 PG R PG + +AG G S GS PAG S GEA Sbjct: 479 PGSRGFPGADGVAGPKGPSGERGSPGPAGPKGSPGEA 515 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.128 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,276,793 Number of Sequences: 219361 Number of extensions: 1312382 Number of successful extensions: 5309 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5265 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
