ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart43b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463421.1| Oryza sativa (japonica cultivar-group), predic... 117 4e-23
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
3dbj|AP003373.3| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
4dbj|AK071819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
5ref|XM_468692.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 2e-09
7gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genom... 72 2e-09
8gb|AY328909.1| Oryza sativa (japonica cultivar-group) BRITTLE CU... 72 2e-09
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
10ref|XM_362983.1| Magnaporthe grisea 70-15 hypothetical protein (... 44 0.46
11gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.46
12emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.46
13gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.46
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.46
15gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 44 0.46
16gb|AC068546.6| Homo sapiens BAC clone RP11-406M18 from 2, comple... 44 0.46
17gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.46
18gb|AC102363.19| Mus musculus chromosome 1, clone RP23-76B18, com... 42 1.8
19ref|NM_190965.1| Oryza sativa (japonica cultivar-group), predic... 40 7.2
20gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 7.2
21gb|AC087327.7| Trypanosoma brucei chromosome 4 clone RPCI93-3I12... 40 7.2
22gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome ... 40 7.2
23ref|XM_821309.1| Trypanosoma brucei TREU927 clone RPCI93-3I12 hy... 40 7.2
24gb|AC126242.3| Mus musculus BAC clone RP24-249E21 from chromosom... 40 7.2
25gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.2
26gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone... 40 7.2
27emb|AL133347.28| Human DNA sequence from clone RP1-274L14 on chr... 40 7.2
28emb|BX071222.1|CNS09R4A Single read from an extremity of a full-... 40 7.2
29emb|BX065330.1|CNS09MKM Single read from an extremity of a full-... 40 7.2
30emb|BX054380.1|CNS09E4G Single read from an extremity of a full-... 40 7.2
31emb|BX035752.1|CNS08ZR0 Single read from an extremity of a full-... 40 7.2
32emb|BX030280.1|CNS08VJ0 Single read from an extremity of a full-... 40 7.2
33emb|BX030279.1|CNS08VIZ Single read from an extremity of a full-... 40 7.2
34emb|BX024236.1|CNS08QV4 Single read from an extremity of a full-... 40 7.2
35emb|BX019558.1|CNS08N96 Single read from an extremity of a full-... 40 7.2
36emb|BX021289.1|CNS08OL9 Single read from an extremity of a full-... 40 7.2
37emb|BX011358.1|CNS08GXE Single read from an extremity of a full-... 40 7.2
38emb|BX011033.1|CNS08GOD Single read from an extremity of a full-... 40 7.2
39emb|AJ242840.1|NGO242840 Neisseria gonorrhoeae DNA for opcA regi... 40 7.2
40emb|AJ242839.1|NGO242839 Neisseria gonorrhoeae DNA for opcA regi... 40 7.2
41emb|AL603744.3| Zebrafish DNA sequence from clone BUSM1-79M10 Co... 40 7.2
42gb|AC123568.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.2
43tpg|BK005012.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 7.2
44gb|AC097485.2| Homo sapiens BAC clone RP11-163K17 from 4, comple... 40 7.2
45gb|AC083826.7| Homo sapiens BAC clone RP11-289C17 from 4, comple... 40 7.2
46gb|AC159137.8| Mus musculus 10 BAC RP23-9N9 (Roswell Park Cancer... 40 7.2
47gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2
48dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
49dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
50dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
51dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
52dbj|AK121250.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
53ref|XM_318826.2| Anopheles gambiae str. PEST ENSANGP00000010223 ... 40 7.2
54dbj|AK100415.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
55gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z21... 40 7.2
56gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 7.2
57dbj|AP000805.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.2
58emb|CT025573.9| Mouse DNA sequence from clone RP24-274P18 on chr... 40 7.2
59emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in... 40 7.2
60gb|AC092856.26| Mus musculus strain C57BL/6J chromosome 10 clone... 40 7.2 
>ref|XM_463421.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1455

 Score =  117 bits (59), Expect = 4e-23
 Identities = 177/216 (81%), Gaps = 9/216 (4%)
 Strand = Plus / Plus

                                                                       
Query: 110 caccacgatgccacggaagctggtggtcctgtacccgtcgccgggcatgggccacctggt 169
           |||||||| | | ||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct: 21  caccacgagggcccggaagccggtcgtgctctacccgtcgccgggcatgggccacctggt 80

                                                                       
Query: 170 ctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcgccgtcaccatcgtcgt 229
           ||| |||||||| || || ||| |  |||| ||||| ||||||||||||||| |||||||
Sbjct: 81  ctccatgatcgagctcggcaaggtgttcgccgcccgcggcctcgccgtcaccgtcgtcgt 140

                                                                       
Query: 230 catcgacctaccgca---caacaccggagcaagcgcaacagggcccttcctcgccggggt 286
           | |||||| |||| |   ||||||||      |||| || ||||| ||||||||||| ||
Sbjct: 141 cgtcgacccaccgtacggcaacaccg------gcgcgacggggcctttcctcgccggcgt 194

                                               
Query: 287 ctccgcggccaaccccaccatctccttccaccgtct 322
           | |||||||||||||  ||||  | |||||||||||
Sbjct: 195 caccgcggccaacccggccatgacgttccaccgtct 230
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  117 bits (59), Expect = 4e-23
 Identities = 177/216 (81%), Gaps = 9/216 (4%)
 Strand = Plus / Minus

                                                                            
Query: 110      caccacgatgccacggaagctggtggtcctgtacccgtcgccgggcatgggccacctggt 169
                |||||||| | | ||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct: 28842896 caccacgagggcccggaagccggtcgtgctctacccgtcgccgggcatgggccacctggt 28842837

                                                                            
Query: 170      ctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcgccgtcaccatcgtcgt 229
                ||| |||||||| || || ||| |  |||| ||||| ||||||||||||||| |||||||
Sbjct: 28842836 ctccatgatcgagctcggcaaggtgttcgccgcccgcggcctcgccgtcaccgtcgtcgt 28842777

                                                                            
Query: 230      catcgacctaccgca---caacaccggagcaagcgcaacagggcccttcctcgccggggt 286
                | |||||| |||| |   ||||||||      |||| || ||||| ||||||||||| ||
Sbjct: 28842776 cgtcgacccaccgtacggcaacaccg------gcgcgacggggcctttcctcgccggcgt 28842723

                                                    
Query: 287      ctccgcggccaaccccaccatctccttccaccgtct 322
                | |||||||||||||  ||||  | |||||||||||
Sbjct: 28842722 caccgcggccaacccggccatgacgttccaccgtct 28842687



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 211      tcgccgtcaccatcgtcgtcatcg 234
                |||||||||||| |||||||||||
Sbjct: 34077203 tcgccgtcaccaccgtcgtcatcg 34077180



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 419      cgccgccacctcccctgccg 438
                ||||||||||||||||||||
Sbjct: 25071020 cgccgccacctcccctgccg 25071039



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 418      tcgccgccacctcccctgcc 437
                ||||||||||||||||||||
Sbjct: 10474655 tcgccgccacctcccctgcc 10474636
to top
>dbj|AP003373.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1116_H09
          Length = 110086

 Score =  117 bits (59), Expect = 4e-23
 Identities = 177/216 (81%), Gaps = 9/216 (4%)
 Strand = Plus / Minus

                                                                         
Query: 110   caccacgatgccacggaagctggtggtcctgtacccgtcgccgggcatgggccacctggt 169
             |||||||| | | ||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct: 60939 caccacgagggcccggaagccggtcgtgctctacccgtcgccgggcatgggccacctggt 60880

                                                                         
Query: 170   ctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcgccgtcaccatcgtcgt 229
             ||| |||||||| || || ||| |  |||| ||||| ||||||||||||||| |||||||
Sbjct: 60879 ctccatgatcgagctcggcaaggtgttcgccgcccgcggcctcgccgtcaccgtcgtcgt 60820

                                                                         
Query: 230   catcgacctaccgca---caacaccggagcaagcgcaacagggcccttcctcgccggggt 286
             | |||||| |||| |   ||||||||      |||| || ||||| ||||||||||| ||
Sbjct: 60819 cgtcgacccaccgtacggcaacaccg------gcgcgacggggcctttcctcgccggcgt 60766

                                                 
Query: 287   ctccgcggccaaccccaccatctccttccaccgtct 322
             | |||||||||||||  ||||  | |||||||||||
Sbjct: 60765 caccgcggccaacccggccatgacgttccaccgtct 60730
to top
>dbj|AK071819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114N14, full
           insert sequence
          Length = 1727

 Score =  117 bits (59), Expect = 4e-23
 Identities = 177/216 (81%), Gaps = 9/216 (4%)
 Strand = Plus / Plus

                                                                       
Query: 110 caccacgatgccacggaagctggtggtcctgtacccgtcgccgggcatgggccacctggt 169
           |||||||| | | ||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct: 82  caccacgagggcccggaagccggtcgtgctctacccgtcgccgggcatgggccacctggt 141

                                                                       
Query: 170 ctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcgccgtcaccatcgtcgt 229
           ||| |||||||| || || ||| |  |||| ||||| ||||||||||||||| |||||||
Sbjct: 142 ctccatgatcgagctcggcaaggtgttcgccgcccgcggcctcgccgtcaccgtcgtcgt 201

                                                                       
Query: 230 catcgacctaccgca---caacaccggagcaagcgcaacagggcccttcctcgccggggt 286
           | |||||| |||| |   ||||||||      |||| || ||||| ||||||||||| ||
Sbjct: 202 cgtcgacccaccgtacggcaacaccg------gcgcgacggggcctttcctcgccggcgt 255

                                               
Query: 287 ctccgcggccaaccccaccatctccttccaccgtct 322
           | |||||||||||||  ||||  | |||||||||||
Sbjct: 256 caccgcggccaacccggccatgacgttccaccgtct 291
to top
>ref|XM_468692.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 459

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 154 gcatgggccacctggtctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcg 213
           ||||||||||||||||||| ||||||||  | || ||| |  |||| ||||| |||||||
Sbjct: 107 gcatgggccacctggtctccatgatcgagttcggcaaggtgttcgccgcccgcggcctcg 166

                                   
Query: 214 ccgtcaccatcgtcgtcatcgacc 237
           |||||||| |||||||| ||||||
Sbjct: 167 ccgtcaccgtcgtcgtcgtcgacc 190
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                            
Query: 154      gcatgggccacctggtctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcg 213
                ||||||||||||||||||| ||||||||  | || ||| |  |||| ||||| |||||||
Sbjct: 17071264 gcatgggccacctggtctccatgatcgagttcggcaaggtgttcgccgcccgcggcctcg 17071205

                                        
Query: 214      ccgtcaccatcgtcgtcatcgacc 237
                |||||||| |||||||| ||||||
Sbjct: 17071204 ccgtcaccgtcgtcgtcgtcgacc 17071181



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 211     tcgccgtcaccatcgtcgtc 230
               ||||||||||||||||||||
Sbjct: 5405434 tcgccgtcaccatcgtcgtc 5405453
to top
>gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genomic sequence, complete
              sequence
          Length = 157662

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                          
Query: 154    gcatgggccacctggtctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcg 213
              ||||||||||||||||||| ||||||||  | || ||| |  |||| ||||| |||||||
Sbjct: 102010 gcatgggccacctggtctccatgatcgagttcggcaaggtgttcgccgcccgcggcctcg 101951

                                      
Query: 214    ccgtcaccatcgtcgtcatcgacc 237
              |||||||| |||||||| ||||||
Sbjct: 101950 ccgtcaccgtcgtcgtcgtcgacc 101927
to top
>gb|AY328909.1| Oryza sativa (japonica cultivar-group) BRITTLE CULM1 (BC1) gene,
           complete cds
          Length = 4498

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 154 gcatgggccacctggtctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcg 213
           ||||||||||||||||||| ||||||||  | || ||| |  |||| ||||| |||||||
Sbjct: 835 gcatgggccacctggtctccatgatcgagttcggcaaggtgttcgccgcccgcggcctcg 776

                                   
Query: 214 ccgtcaccatcgtcgtcatcgacc 237
           |||||||| |||||||| ||||||
Sbjct: 775 ccgtcaccgtcgtcgtcgtcgacc 752
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                            
Query: 154      gcatgggccacctggtctcgatgatcgaactgggtaagatcatcgctgcccgtggcctcg 213
                ||||||||||||||||||| ||||||||  | || ||| |  |||| ||||| |||||||
Sbjct: 17064833 gcatgggccacctggtctccatgatcgagttcggcaaggtgttcgccgcccgcggcctcg 17064774

                                        
Query: 214      ccgtcaccatcgtcgtcatcgacc 237
                |||||||| |||||||| ||||||
Sbjct: 17064773 ccgtcaccgtcgtcgtcgtcgacc 17064750



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 211     tcgccgtcaccatcgtcgtc 230
               ||||||||||||||||||||
Sbjct: 5404649 tcgccgtcaccatcgtcgtc 5404668
to top
>ref|XM_362983.1| Magnaporthe grisea 70-15 hypothetical protein (MG08454.4) partial
           cds
          Length = 708

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 144 ccgtcgccgggcatgggccacc 165
           ||||||||||||||||||||||
Sbjct: 352 ccgtcgccgggcatgggccacc 373
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 151     cgggcatgggccacctggtctcgatg 176
               |||||||||||||||||||| |||||
Sbjct: 2303729 cgggcatgggccacctggtcgcgatg 2303754
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 151    cgggcatgggccacctggtctcgatg 176
              |||||||||||||||||||| |||||
Sbjct: 465191 cgggcatgggccacctggtcgcgatg 465216
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 207     ggcctcgccgtcaccatcgtcg 228
               ||||||||||||||||||||||
Sbjct: 3796289 ggcctcgccgtcaccatcgtcg 3796268
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 209     cctcgccgtcaccatcgtcgtcatcg 234
               ||||| ||||||||||||||||||||
Sbjct: 4446614 cctcggcgtcaccatcgtcgtcatcg 4446589
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 151     cgggcatgggccacctggtctcgatg 176
               |||||||||||||||||||| |||||
Sbjct: 1523403 cgggcatgggccacctggtcgcgatg 1523378
to top
>gb|AC068546.6| Homo sapiens BAC clone RP11-406M18 from 2, complete sequence
          Length = 89493

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 11   cactccaaagcagacaccacca 32
            ||||||||||||||||||||||
Sbjct: 8670 cactccaaagcagacaccacca 8691
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 151     cgggcatgggccacctggtctcgatg 176
               |||||||||||||||||||| |||||
Sbjct: 2518593 cgggcatgggccacctggtcgcgatg 2518568
to top
>gb|AC102363.19| Mus musculus chromosome 1, clone RP23-76B18, complete sequence
          Length = 210317

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 395   catccctcacctgcgtgattt 415
             |||||||||||||||||||||
Sbjct: 84958 catccctcacctgcgtgattt 84938
to top
>ref|NM_190965.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 504

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 211 tcgccgtcaccatcgtcgtcatcg 234
           |||||||||||| |||||||||||
Sbjct: 292 tcgccgtcaccaccgtcgtcatcg 269
to top
>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 214     ccgtcaccatcgtcgtcatc 233
               ||||||||||||||||||||
Sbjct: 1303764 ccgtcaccatcgtcgtcatc 1303783
to top
>gb|AC087327.7| Trypanosoma brucei chromosome 4 clone RPCI93-3I12, complete sequence
          Length = 158030

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   ccgtcaccatcgtcgtcatc 233
             ||||||||||||||||||||
Sbjct: 20251 ccgtcaccatcgtcgtcatc 20232
to top
>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence
          Length = 206456

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    ccgtcaccatcgtcgtcatc 233
              ||||||||||||||||||||
Sbjct: 198896 ccgtcaccatcgtcgtcatc 198877
to top
>ref|XM_821309.1| Trypanosoma brucei TREU927 clone RPCI93-3I12 hypothetical protein
            (Tb927.4.4740) partial mRNA
          Length = 1179

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  ccgtcaccatcgtcgtcatc 233
            ||||||||||||||||||||
Sbjct: 1130 ccgtcaccatcgtcgtcatc 1111
to top
>gb|AC126242.3| Mus musculus BAC clone RP24-249E21 from chromosome 10, complete sequence
          Length = 177581

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     actccaaagcagacaccacc 31
              ||||||||||||||||||||
Sbjct: 176571 actccaaagcagacaccacc 176590
to top
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    tcgccgtcaccatcgtcgtc 230
              ||||||||||||||||||||
Sbjct: 111602 tcgccgtcaccatcgtcgtc 111621
to top
>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17,
              complete sequence
          Length = 202430

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    ccgtcaccatcgtcgtcatc 233
              ||||||||||||||||||||
Sbjct: 131072 ccgtcaccatcgtcgtcatc 131053
to top
>emb|AL133347.28| Human DNA sequence from clone RP1-274L14 on chromosome 6q25.2-26
             Contains part of a novel gene, a signal recognition
             particle 72kD (SRP72) pseudogene and three CpG islands,
             complete sequence
          Length = 100732

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   cgccgccacctcccctgccg 438
             ||||||||||||||||||||
Sbjct: 63731 cgccgccacctcccctgccg 63712
to top
>emb|BX071222.1|CNS09R4A Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC8CF09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 913

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 216 acctaccgcacaacaccgga 235
to top
>emb|BX065330.1|CNS09MKM Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC49AG05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 340

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 171 acctaccgcacaacaccgga 190
to top
>emb|BX054380.1|CNS09E4G Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC32CB01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 814

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 132 acctaccgcacaacaccgga 151
to top
>emb|BX035752.1|CNS08ZR0 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA7BA04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 471

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 194 acctaccgcacaacaccgga 213
to top
>emb|BX030280.1|CNS08VJ0 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA45AH05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 959

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 882 acctaccgcacaacaccgga 863
to top
>emb|BX030279.1|CNS08VIZ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA45AH05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1030

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 217 acctaccgcacaacaccgga 236
to top
>emb|BX024236.1|CNS08QV4 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA36DH06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 542

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 161 acctaccgcacaacaccgga 180
to top
>emb|BX019558.1|CNS08N96 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA29DE01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 953

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 171 acctaccgcacaacaccgga 190
to top
>emb|BX021289.1|CNS08OL9 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA31CC06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 831

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 198 acctaccgcacaacaccgga 217
to top
>emb|BX011358.1|CNS08GXE Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA18AF09 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 529

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 161 acctaccgcacaacaccgga 180
to top
>emb|BX011033.1|CNS08GOD Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA17CE11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 740

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 239 acctaccgcacaacaccgga 258
to top
>emb|AJ242840.1|NGO242840 Neisseria gonorrhoeae DNA for opcA region, strain MS11
          Length = 11825

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 415  tcctcgccgccacctcccctgccg 438
            ||||||||||||||| ||||||||
Sbjct: 8195 tcctcgccgccaccttccctgccg 8218
to top
>emb|AJ242839.1|NGO242839 Neisseria gonorrhoeae DNA for opcA region, strain FA1090
          Length = 11730

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 415  tcctcgccgccacctcccctgccg 438
            ||||||||||||||| ||||||||
Sbjct: 8123 tcctcgccgccaccttccctgccg 8146
to top
>emb|AL603744.3| Zebrafish DNA sequence from clone BUSM1-79M10 Contains two novel genes
             and two transposase/reverse transcriptase pseudogenes,
             complete sequence
          Length = 72590

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   atcgacctaccgcacaacac 250
             ||||||||||||||||||||
Sbjct: 43115 atcgacctaccgcacaacac 43096
to top
>gb|AC123568.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OJ1345H02, from chromosome 3, complete sequence
          Length = 145290

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  tcgccgtcaccatcgtcgtc 230
            ||||||||||||||||||||
Sbjct: 2028 tcgccgtcaccatcgtcgtc 2047
to top
>tpg|BK005012.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
            transcription factor 9 (WRKY9) gene, complete cds
          Length = 8241

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  tcgccgccacctcccctgcc 437
            ||||||||||||||||||||
Sbjct: 6020 tcgccgccacctcccctgcc 6001
to top
>gb|AC097485.2| Homo sapiens BAC clone RP11-163K17 from 4, complete sequence
          Length = 82692

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 24  acaccaccaccacagcgtcc 43
           ||||||||||||||||||||
Sbjct: 871 acaccaccaccacagcgtcc 852
to top
>gb|AC083826.7| Homo sapiens BAC clone RP11-289C17 from 4, complete sequence
          Length = 129240

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     acaccaccaccacagcgtcc 43
              ||||||||||||||||||||
Sbjct: 128111 acaccaccaccacagcgtcc 128092
to top
>gb|AC159137.8| Mus musculus 10 BAC RP23-9N9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207728

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    actccaaagcagacaccacc 31
             ||||||||||||||||||||
Sbjct: 42557 actccaaagcagacaccacc 42576
to top
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09,
              complete sequence
          Length = 153950

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    tcgccgtcaccatcgtcgtc 230
              ||||||||||||||||||||
Sbjct: 135252 tcgccgtcaccatcgtcgtc 135271
to top
>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0006C01
          Length = 153865

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 419    cgccgccacctcccctgccg 438
              ||||||||||||||||||||
Sbjct: 143543 cgccgccacctcccctgccg 143562
to top
>dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0469E05
          Length = 160769

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    tcgccgccacctcccctgcc 437
              ||||||||||||||||||||
Sbjct: 119615 tcgccgccacctcccctgcc 119596
to top
>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0034E02
          Length = 165497

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   tcgccgtcaccatcgtcgtcatcg 234
             |||||||||||| |||||||||||
Sbjct: 73681 tcgccgtcaccaccgtcgtcatcg 73658
to top
>dbj|AP002839.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0688A04
          Length = 143969

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   cgccgccacctcccctgccg 438
             ||||||||||||||||||||
Sbjct: 70628 cgccgccacctcccctgccg 70647
to top
>dbj|AK121250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101G05, full
            insert sequence
          Length = 3548

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  tcgccgtcaccatcgtcgtc 230
            ||||||||||||||||||||
Sbjct: 1270 tcgccgtcaccatcgtcgtc 1289
to top
>ref|XM_318826.2| Anopheles gambiae str. PEST ENSANGP00000010223
           (ENSANGG00000007734), partial mRNA
          Length = 516

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 acctaccgcacaacaccgga 254
           ||||||||||||||||||||
Sbjct: 88  acctaccgcacaacaccgga 107
to top
>dbj|AK100415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M18, full
            insert sequence
          Length = 3726

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  tcgccgtcaccatcgtcgtc 230
            ||||||||||||||||||||
Sbjct: 1588 tcgccgtcaccatcgtcgtc 1607
to top
>gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S
              ribosomal protein S8 (Z214A02.25), and putative casein
              kinase I (Z214A02.27) genes, complete cds
          Length = 158797

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                              
Query: 273    ttcctcgccggggtctccgcggccaaccccaccatctccttccaccgt 320
              |||||| |||| ||||||  ||||||||   |||||||||||||||||
Sbjct: 152863 ttcctcaccggcgtctccttggccaacctgtccatctccttccaccgt 152910
to top
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 415    tcctcgccgccacctcccctgccg 438
              ||||||||||||||| ||||||||
Sbjct: 856669 tcctcgccgccaccttccctgccg 856692
to top
>dbj|AP000805.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-698L23, complete
              sequence
          Length = 180996

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     ctccaaagcagacaccacca 32
              ||||||||||||||||||||
Sbjct: 101904 ctccaaagcagacaccacca 101885
to top
>emb|CT025573.9| Mouse DNA sequence from clone RP24-274P18 on chromosome 17, complete
              sequence
          Length = 210893

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    ccgtcaccatcgtcgtcatc 233
              ||||||||||||||||||||
Sbjct: 193085 ccgtcaccatcgtcgtcatc 193104
to top
>emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in linkage group 10,
              complete sequence
          Length = 188280

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    atcgacctaccgcacaacac 250
              ||||||||||||||||||||
Sbjct: 141999 atcgacctaccgcacaacac 141980
to top
>gb|AC092856.26| Mus musculus strain C57BL/6J chromosome 10 clone rp23-7p15, complete
             sequence
          Length = 221799

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    actccaaagcagacaccacc 31
             ||||||||||||||||||||
Sbjct: 26448 actccaaagcagacaccacc 26429


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,793,807
Number of Sequences: 3902068
Number of extensions: 3793807
Number of successful extensions: 82378
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81477
Number of HSP's gapped (non-prelim): 892
length of query: 531
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 508
effective length of database: 17,143,297,704
effective search space: 8708795233632
effective search space used: 8708795233632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top