ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart43a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
2dbj|AK059568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 111 2e-21
4emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa... 111 2e-21
5emb|AL021392.5|HS439F8 Human DNA sequence from clone RP3-439F8 o... 50 0.008
6gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene lo... 42 1.9
7gb|AC107638.17| Mus musculus, clone RP23-44D14, complete sequence 42 1.9
8gb|AC150313.7| Mus musculus BAC clone RP23-436A18 from chromosom... 42 1.9
9gb|AC011745.4|AC011745 Homo sapiens BAC clone RP11-329C15 from Y... 42 1.9
10gb|AC140197.4| Mus musculus BAC clone RP23-253A22 from chromosom... 40 7.5
11gb|AC131154.2| Homo sapiens 3 BAC RP13-489G4 (Roswell Park Cance... 40 7.5
12ref|XM_777474.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.5
13gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
14gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, co... 40 7.5
15gb|AC012082.6| Homo sapiens chr3 BAC RP11-420O16 (Roswell Park C... 40 7.5
16dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
17gb|AC018456.18| Homo sapiens 3 BAC RP11-172G5 (Roswell Park Canc... 40 7.5
18dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.5
19gb|AC120860.7| Mus musculus chromosome 1, clone RP23-26I10, comp... 40 7.5
20gb|AC002449.1|AC002449 Human PAC clone RP3-404K21 from Xq23, com... 40 7.5
21gb|AC149599.3| Mus musculus BAC clone RP23-193A3 from 18, comple... 40 7.5
22gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
23gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, co... 40 7.5
24gb|AC123611.7| Mus musculus chromosome 15, clone RP23-345H23, co... 40 7.5
25emb|AL646049.14| Mouse DNA sequence from clone RP23-63A9 on chro... 40 7.5 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  111 bits (56), Expect = 2e-21
 Identities = 141/168 (83%), Gaps = 6/168 (3%)
 Strand = Plus / Plus

                                                                            
Query: 395      accagaagagcgagagtcatgaaaatgcagaacagcagcagc---ttaatcatgcaaccc 451
                |||||||||||||||| |||||||||||||||||||||||||   ||| ||||||  | |
Sbjct: 23305564 accagaagagcgagagccatgaaaatgcagaacagcagcagcagcttagtcatgcgccac 23305623

                                                                            
Query: 452      gtcgccagggacagcacaacgg---gaggtaacacaggggaagcggcacacacaggggaa 508
                | || ||||| || ||||| ||   |||||| ||||| ||| | |||||| |||||||||
Sbjct: 23305624 gccgacagggccaccacaatggtgggaggtaccacagaggaggtggcacaaacaggggaa 23305683

                                                                
Query: 509      ggggttatgatgctgggcagccaagccatggcgcaaatgcagaaaggc 556
                |||||||||||| |||| |||| ||||||| | |||| ||||||||||
Sbjct: 23305684 ggggttatgatgttgggaagcccagccatgtcacaaacgcagaaaggc 23305731



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                            
Query: 43       aaagaacatgctgcaactaacaggcaaaggaggcagcatgttaagggcccaaaaaatgag 102
                |||||||||| |||| |||||| ||||||| | |||||||||||||  |  | |||||||
Sbjct: 23305176 aaagaacatggtgcagctaacaagcaaaggcgtcagcatgttaaggctcagagaaatgag 23305235

                                       
Query: 103      gcaagtaactacccaaatgagaa 125
                | |||||||||||| ||||||||
Sbjct: 23305236 ggaagtaactacccgaatgagaa 23305258
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>dbj|AK059568.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H11, full
           insert sequence
          Length = 1402

 Score =  111 bits (56), Expect = 2e-21
 Identities = 141/168 (83%), Gaps = 6/168 (3%)
 Strand = Plus / Plus

                                                                       
Query: 395 accagaagagcgagagtcatgaaaatgcagaacagcagcagc---ttaatcatgcaaccc 451
           |||||||||||||||| |||||||||||||||||||||||||   ||| ||||||  | |
Sbjct: 408 accagaagagcgagagccatgaaaatgcagaacagcagcagcagcttagtcatgcgccac 467

                                                                       
Query: 452 gtcgccagggacagcacaacgg---gaggtaacacaggggaagcggcacacacaggggaa 508
           | || ||||| || ||||| ||   |||||| ||||| ||| | |||||| |||||||||
Sbjct: 468 gccgacagggccaccacaatggtgggaggtaccacagaggaggtggcacaaacaggggaa 527

                                                           
Query: 509 ggggttatgatgctgggcagccaagccatggcgcaaatgcagaaaggc 556
           |||||||||||| |||| |||| ||||||| | |||| ||||||||||
Sbjct: 528 ggggttatgatgttgggaagcccagccatgtcacaaacgcagaaaggc 575



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 43  aaagaacatgctgcaactaacaggcaaaggaggcagcatgttaagggcccaaaaaatgag 102
           |||||||||| |||| |||||| ||||||| | |||||||||||||  |  | |||||||
Sbjct: 20  aaagaacatggtgcagctaacaagcaaaggcgtcagcatgttaaggctcagagaaatgag 79

                                  
Query: 103 gcaagtaactacccaaatgagaa 125
           | |||||||||||| ||||||||
Sbjct: 80  ggaagtaactacccgaatgagaa 102
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  111 bits (56), Expect = 2e-21
 Identities = 141/168 (83%), Gaps = 6/168 (3%)
 Strand = Plus / Plus

                                                                            
Query: 395      accagaagagcgagagtcatgaaaatgcagaacagcagcagc---ttaatcatgcaaccc 451
                |||||||||||||||| |||||||||||||||||||||||||   ||| ||||||  | |
Sbjct: 23233755 accagaagagcgagagccatgaaaatgcagaacagcagcagcagcttagtcatgcgccac 23233814

                                                                            
Query: 452      gtcgccagggacagcacaacgg---gaggtaacacaggggaagcggcacacacaggggaa 508
                | || ||||| || ||||| ||   |||||| ||||| ||| | |||||| |||||||||
Sbjct: 23233815 gccgacagggccaccacaatggtgggaggtaccacagaggaggtggcacaaacaggggaa 23233874

                                                                
Query: 509      ggggttatgatgctgggcagccaagccatggcgcaaatgcagaaaggc 556
                |||||||||||| |||| |||| ||||||| | |||| ||||||||||
Sbjct: 23233875 ggggttatgatgttgggaagcccagccatgtcacaaacgcagaaaggc 23233922



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                            
Query: 43       aaagaacatgctgcaactaacaggcaaaggaggcagcatgttaagggcccaaaaaatgag 102
                |||||||||| |||| |||||| ||||||| | |||||||||||||  |  | |||||||
Sbjct: 23233367 aaagaacatggtgcagctaacaagcaaaggcgtcagcatgttaaggctcagagaaatgag 23233426

                                       
Query: 103      gcaagtaactacccaaatgagaa 125
                | |||||||||||| ||||||||
Sbjct: 23233427 ggaagtaactacccgaatgagaa 23233449
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>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 168063

 Score =  111 bits (56), Expect = 2e-21
 Identities = 141/168 (83%), Gaps = 6/168 (3%)
 Strand = Plus / Plus

                                                                          
Query: 395    accagaagagcgagagtcatgaaaatgcagaacagcagcagc---ttaatcatgcaaccc 451
              |||||||||||||||| |||||||||||||||||||||||||   ||| ||||||  | |
Sbjct: 118682 accagaagagcgagagccatgaaaatgcagaacagcagcagcagcttagtcatgcgccac 118741

                                                                          
Query: 452    gtcgccagggacagcacaacgg---gaggtaacacaggggaagcggcacacacaggggaa 508
              | || ||||| || ||||| ||   |||||| ||||| ||| | |||||| |||||||||
Sbjct: 118742 gccgacagggccaccacaatggtgggaggtaccacagaggaggtggcacaaacaggggaa 118801

                                                              
Query: 509    ggggttatgatgctgggcagccaagccatggcgcaaatgcagaaaggc 556
              |||||||||||| |||| |||| ||||||| | |||| ||||||||||
Sbjct: 118802 ggggttatgatgttgggaagcccagccatgtcacaaacgcagaaaggc 118849



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                          
Query: 43     aaagaacatgctgcaactaacaggcaaaggaggcagcatgttaagggcccaaaaaatgag 102
              |||||||||| |||| |||||| ||||||| | |||||||||||||  |  | |||||||
Sbjct: 118294 aaagaacatggtgcagctaacaagcaaaggcgtcagcatgttaaggctcagagaaatgag 118353

                                     
Query: 103    gcaagtaactacccaaatgagaa 125
              | |||||||||||| ||||||||
Sbjct: 118354 ggaagtaactacccgaatgagaa 118376
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>emb|AL021392.5|HS439F8 Human DNA sequence from clone RP3-439F8 on chromosome 22q13.31-33,
             complete sequence
          Length = 120206

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 480   acacaggggaagcggcacacacaggggaa 508
             ||||||||||||| |||||||||||||||
Sbjct: 33131 acacaggggaagccgcacacacaggggaa 33159



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 480   acacaggggaagcggcacacacaggggaa 508
             ||||||||||||| |||||||||||||||
Sbjct: 32875 acacaggggaagccgcacacacaggggaa 32903



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 481   cacaggggaagcggcacacacaggggaa 508
             |||||||||||| |||||||||||||||
Sbjct: 31651 cacaggggaagccgcacacacaggggaa 31678



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 481   cacaggggaagcggcacacacaggggaa 508
             |||||||||||| |||||||||||||||
Sbjct: 30833 cacaggggaagctgcacacacaggggaa 30860



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 480   acacaggggaagcggcacacacaggggaag 509
             ||||||||||| | ||||||||||||||||
Sbjct: 33113 acacaggggaacctgcacacacaggggaag 33142



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 480   acacaggggaagcggcacacacaggggaag 509
             ||||||||||| | ||||||||||||||||
Sbjct: 32857 acacaggggaacctgcacacacaggggaag 32886



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 480   acacaggggaagcggcacacacaggggaa 508
             ||||||||||| | |||||||||||||||
Sbjct: 32703 acacaggggaacctgcacacacaggggaa 32731



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 480   acacaggggaagcggcacacacaggggaa 508
             |||||||||||||  ||||||||||||||
Sbjct: 31922 acacaggggaagccacacacacaggggaa 31950



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 481   cacaggggaagcggcacacacaggggaa 508
             ||||||||||||  ||||||||||||||
Sbjct: 31461 cacaggggaagccacacacacaggggaa 31488
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>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence
          Length = 307015

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 134    acaggaaagatgtgaatcacatgtc 158
              ||||||| |||||||||||||||||
Sbjct: 190569 acaggaacgatgtgaatcacatgtc 190593
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>gb|AC107638.17| Mus musculus, clone RP23-44D14, complete sequence
          Length = 231286

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 157    tcaacacgtggaatggatgcaaaca 181
              ||||||| |||||||||||||||||
Sbjct: 187895 tcaacacatggaatggatgcaaaca 187871
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>gb|AC150313.7| Mus musculus BAC clone RP23-436A18 from chromosome 7, complete sequence
          Length = 204095

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 157   tcaacacgtggaatggatgcaaaca 181
             ||||||| |||||||||||||||||
Sbjct: 39393 tcaacacatggaatggatgcaaaca 39369
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>gb|AC011745.4|AC011745 Homo sapiens BAC clone RP11-329C15 from Y, complete sequence
          Length = 149525

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    caaaagaacatgctgcaacta 61
             |||||||||||||||||||||
Sbjct: 34435 caaaagaacatgctgcaacta 34455
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>gb|AC140197.4| Mus musculus BAC clone RP23-253A22 from chromosome 18, complete
             sequence
          Length = 192563

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   cagagatgacaggaaagatg 145
             ||||||||||||||||||||
Sbjct: 68978 cagagatgacaggaaagatg 68997
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>gb|AC131154.2| Homo sapiens 3 BAC RP13-489G4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189348

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    caggaaagatgtgaatcaca 154
              ||||||||||||||||||||
Sbjct: 145855 caggaaagatgtgaatcaca 145836
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>ref|XM_777474.1| PREDICTED: Strongylocentrotus purpuratus similar to Trichohyalin
           (LOC577233), mRNA
          Length = 2169

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 386 tggaagagaaccagaagagcgaga 409
           |||||||||| |||||||||||||
Sbjct: 767 tggaagagaaacagaagagcgaga 790
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>gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0047M04, complete sequence
          Length = 109523

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 509   ggggttatgatgctgggcagccaa 532
             ||||||||||||||||| ||||||
Sbjct: 86111 ggggttatgatgctggggagccaa 86134
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>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence
          Length = 113199

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    caactaacaggcaaaggagg 75
             ||||||||||||||||||||
Sbjct: 45913 caactaacaggcaaaggagg 45932
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>gb|AC012082.6| Homo sapiens chr3 BAC RP11-420O16 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 158469

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    atgcaaacacttctgaacat 192
              ||||||||||||||||||||
Sbjct: 121798 atgcaaacacttctgaacat 121817
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 509      ggggttatgatgctgggcagccaa 532
                ||||||||||||||||| ||||||
Sbjct: 27135058 ggggttatgatgctggggagccaa 27135081
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>gb|AC018456.18| Homo sapiens 3 BAC RP11-172G5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120450

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   atgcaaacacttctgaacat 192
             ||||||||||||||||||||
Sbjct: 78125 atgcaaacacttctgaacat 78144
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 136     aggaaagatgtgaatcacat 155
               ||||||||||||||||||||
Sbjct: 3108943 aggaaagatgtgaatcacat 3108924
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>gb|AC120860.7| Mus musculus chromosome 1, clone RP23-26I10, complete sequence
          Length = 188326

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    aaaaatgaggcaagtaacta 113
             ||||||||||||||||||||
Sbjct: 74220 aaaaatgaggcaagtaacta 74239
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>gb|AC002449.1|AC002449 Human PAC clone RP3-404K21 from Xq23, complete sequence
          Length = 173767

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   acatgtggaagagaaccaga 400
             ||||||||||||||||||||
Sbjct: 75802 acatgtggaagagaaccaga 75821
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>gb|AC149599.3| Mus musculus BAC clone RP23-193A3 from 18, complete sequence
          Length = 208349

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  cagagatgacaggaaagatg 145
            ||||||||||||||||||||
Sbjct: 5199 cagagatgacaggaaagatg 5218
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 509      ggggttatgatgctgggcagccaa 532
                ||||||||||||||||| ||||||
Sbjct: 27462111 ggggttatgatgctggggagccaa 27462134
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>gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, complete sequence
          Length = 185933

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 206    aacctgaggtgaagaacagcgcagctgg 233
              |||||||||||||||| ||| |||||||
Sbjct: 164047 aacctgaggtgaagaagagctcagctgg 164020
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>gb|AC123611.7| Mus musculus chromosome 15, clone RP23-345H23, complete sequence
          Length = 209792

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 206    aacctgaggtgaagaacagcgcagctgg 233
              |||||||||||||||| ||| |||||||
Sbjct: 180286 aacctgaggtgaagaagagctcagctgg 180313
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>emb|AL646049.14| Mouse DNA sequence from clone RP23-63A9 on chromosome X, complete
             sequence
          Length = 146105

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   gaaaccaaaatcttcacatt 274
             ||||||||||||||||||||
Sbjct: 67477 gaaaccaaaatcttcacatt 67458


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,559,507
Number of Sequences: 3902068
Number of extensions: 5559507
Number of successful extensions: 107492
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107274
Number of HSP's gapped (non-prelim): 214
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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