ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart43a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAT3_ARATH (P46602) Homeobox-leucine zipper protein HAT3 (HD-ZIP... 43 5e-04
2HAT4_ARATH (Q05466) Homeobox-leucine zipper protein HAT4 (HD-ZIP... 40 0.003
3HAT1_ARATH (P46600) Homeobox-leucine zipper protein HAT1 (HD-ZIP... 35 0.097
4RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1 33 0.37
5HAT2_ARATH (P46601) Homeobox-leucine zipper protein HAT2 (HD-ZIP... 32 0.63
6CAC1S_RABIT (P07293) Voltage-dependent L-type calcium channel al... 32 1.1
7KAZD1_HUMAN (Q96I82) Kazal-type serine protease inhibitor domain... 31 1.4
8ATHB4_ARATH (P92953) Homeobox-leucine zipper protein ATHB-4 (HD-... 31 1.8
9LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independen... 29 5.3
10LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independen... 29 5.3
11LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent ... 29 5.3
12LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-la... 29 5.3
13LYOX_BOVIN (P33072) Protein-lysine 6-oxidase precursor (EC 1.4.3... 29 6.9
14TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.... 28 9.1

>HAT3_ARATH (P46602) Homeobox-leucine zipper protein HAT3 (HD-ZIP protein 3)|
          Length = 315

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 23/35 (65%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
 Frame = +1

Query: 367 FLRGIDVNRAPATGGAS-EDEEPGASSPDSTLSSL 468
           FLRGIDVNRAP+T     EDE  G SSP+ST+SS+
Sbjct: 75  FLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVSSV 109



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>HAT4_ARATH (Q05466) Homeobox-leucine zipper protein HAT4 (HD-ZIP protein 4)|
           (HD-ZIP protein ATHB-2)
          Length = 284

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +1

Query: 367 FLRGIDVNRAPATGGASEDEEPGASSPDSTLSS 465
           F+RGIDVNR P+T     DE+ G SSP+ST+SS
Sbjct: 67  FIRGIDVNRPPSTAEYG-DEDAGVSSPNSTVSS 98



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>HAT1_ARATH (P46600) Homeobox-leucine zipper protein HAT1 (HD-ZIP protein 1)|
          Length = 282

 Score = 35.0 bits (79), Expect = 0.097
 Identities = 19/33 (57%), Positives = 22/33 (66%)
 Frame = +1

Query: 367 FLRGIDVNRAPATGGASEDEEPGASSPDSTLSS 465
           FLR IDVN  P T     +EE G SSP+ST+SS
Sbjct: 56  FLRKIDVNSLPTT--VDLEEETGVSSPNSTISS 86



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>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1|
          Length = 1889

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -3

Query: 378  PAKERHLVARQRRQPPIICMRALLAGGGRKEEAGAIPGLLQLLLAPQRHR 229
            PAK+R L+ R               G GR+E A + PGLL+ + +PQR R
Sbjct: 1216 PAKKRSLILRSNNGS---------GGDGREERAESSPGLLRRMASPQRAR 1256



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>HAT2_ARATH (P46601) Homeobox-leucine zipper protein HAT2 (HD-ZIP protein 2)|
          Length = 283

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 370 LRGIDVNRAPATGGASEDEEPGASSPDSTLSS 465
           LR IDVN  P+T    ED   G SSP+ST+SS
Sbjct: 52  LRKIDVNSFPSTVNCEED--TGVSSPNSTISS 81



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>CAC1S_RABIT (P07293) Voltage-dependent L-type calcium channel alpha-1S subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 3,
            skeletal muscle)
          Length = 1873

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 434  PGSSSSLAPPVAGARLTSIPRRNGISWHASAASLRSSACERCSPEGAGKKRPAP 273
            PG   + APP    + ++ P   G    +   SL+  A +R S EG+  +RPAP
Sbjct: 1729 PGMPINQAPPAPCQQPSTDPPERGQRRTSLTGSLQDEAPQRRSSEGSTPRRPAP 1782



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>KAZD1_HUMAN (Q96I82) Kazal-type serine protease inhibitor domain-containing|
           protein 1 precursor
          Length = 304

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
 Frame = -1

Query: 416 LAPPVAGARLTSIPRRNGISWHASAASLRSSACERCSPEGAGKKR---PAPFQDCCSCCW 246
           L PP  GAR +  P      W    A      C  C PE     R       +D C CCW
Sbjct: 23  LTPPPTGARPSPGPDYLRRGWMRLLAE--GEGCAPCRPEECAAPRGCLAGRVRDACGCCW 80



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>ATHB4_ARATH (P92953) Homeobox-leucine zipper protein ATHB-4 (HD-ZIP protein|
           ATHB-4)
          Length = 318

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 367 FLRGIDVNRAPATGGASEDEEPGA--SSPDSTLSSL 468
           FLRG +VNRA ++    + EE  A  SSP+S +SSL
Sbjct: 83  FLRGFNVNRAQSSVAVVDLEEEAAVVSSPNSAVSSL 118



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>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent|
            alpha-latrotoxin receptor 1)
          Length = 1472

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 467  RLDSVLSGDDAPGSSSSLAPPVAGAR-LTSIPRRNGISWHASAASLRSS-ACERCSPEGA 294
            R  SVL   D   S S  A   A +R L+S P R+ +  +AS A+LR S +    SPEG 
Sbjct: 1346 RAQSVLYQSDLDESESCTAEDGATSRPLSSPPGRDSL--YASGANLRDSPSYPDSSPEGP 1403

Query: 293  GKKRPAP 273
             +  P P
Sbjct: 1404 SEALPPP 1410



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>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent|
            alpha-latrotoxin receptor 1) (Lectomedin-2)
          Length = 1474

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 467  RLDSVLSGDDAPGSSSSLAPPVAGAR-LTSIPRRNGISWHASAASLRSS-ACERCSPEGA 294
            R  SVL   D   S S  A   A +R L+S P R+ +  +AS A+LR S +    SPEG 
Sbjct: 1348 RAQSVLYQSDLDESESCTAEDGATSRPLSSPPGRDSL--YASGANLRDSPSYPDSSPEGP 1405

Query: 293  GKKRPAP 273
             +  P P
Sbjct: 1406 SEALPPP 1412



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>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent|
            alpha-latrotoxin receptor 1) (CIRL-1)
          Length = 1515

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 467  RLDSVLSGDDAPGSSSSLAPPVAGAR-LTSIPRRNGISWHASAASLRSS-ACERCSPEGA 294
            R  SVL   D   S S  A   A +R L+S P R+ +  +AS A+LR S +    SPEG 
Sbjct: 1389 RAQSVLYQSDLDESESCTAEDGATSRPLSSPPGRDSL--YASGANLRDSPSYPDSSPEGP 1446

Query: 293  GKKRPAP 273
             +  P P
Sbjct: 1447 NEALPPP 1453



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>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin receptor|
            1) (Lectomedin-2) (Fragment)
          Length = 1406

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 467  RLDSVLSGDDAPGSSSSLAPPVAGAR-LTSIPRRNGISWHASAASLRSS-ACERCSPEGA 294
            R  SVL   D   S S  A   A +R L+S P R+ +  +AS A+LR S +    SPEG 
Sbjct: 1280 RAQSVLYQSDLDESESCTAEDGATSRPLSSPPGRDSL--YASGANLRDSPSYPDSSPEGP 1337

Query: 293  GKKRPAP 273
             +  P P
Sbjct: 1338 NEALPPP 1344



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>LYOX_BOVIN (P33072) Protein-lysine 6-oxidase precursor (EC 1.4.3.13) (Lysyl|
           oxidase)
          Length = 418

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 359 SWHASAASLRSSACERCSPEGAGKKRPAPFQDCCSCCWRPSV 234
           +W A   SL+  A  RC+P  A  ++P   Q      WR  +
Sbjct: 4   AWTALLGSLQLCALVRCAPPAASHRQPPREQAAAPGAWRQKI 45



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>TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (Tumor suppressor
           p53-binding protein 3) (p53-bindi
          Length = 1045

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +1

Query: 292 PAPSGEQRSHADDRRLAALACHEMPFLRGIDVNRAPATGGASEDEEPGASSPDS-----T 456
           PAPS E+ SH+D   +      +    + +D+N A  +    +DE PG S   S     T
Sbjct: 377 PAPSYEEGSHSDSSVIT--ISPDEAETQELDINVATVSQAPWDDETPGPSYSSSEQVHVT 434

Query: 457 LSSL 468
           +SSL
Sbjct: 435 MSSL 438


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.127    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,753,481
Number of Sequences: 219361
Number of extensions: 875503
Number of successful extensions: 2456
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2446
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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