ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart43a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMOT_HUMAN (Q4VCS5) Angiomotin 37 0.047
2GCH1_CHICK (P50141) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I) 32 1.5
3NAC90_ARATH (Q9FMR3) NAC domain-containing protein 90 (ANAC090) 30 4.4
4LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-bind... 25 5.3
5NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 pr... 30 5.8
6NAC61_ARATH (Q9M290) Putative NAC domain-containing protein 61 (... 30 5.8
7HAIR_MOUSE (Q61645) Protein hairless 29 7.6
8VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21 29 9.9
9LECF_ALEAU (P18891) Fucose-specific lectin (Aleuria aurantia lec... 29 9.9

>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 36.6 bits (83), Expect = 0.047
 Identities = 30/110 (27%), Positives = 39/110 (35%)
 Frame = +1

Query: 121  ATPLEWPLASPRFTGLHHPGRRPACCSTTRGTLCQRRGADGPVELLAQLSKTXXXXXXXX 300
            +TP   P ++P  +     G R     T RGT   +  A  P+ + A ++          
Sbjct: 839  STPSPVPPSTPLLSAHSKTGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAITA 898

Query: 301  XXXXXXXXXDEEAPVYAFMARAPIAEGRCIPSPKLAAEAPTATVSCPGVG 450
                        APV    A AP A     PSP  AA A  A VS    G
Sbjct: 899  TAATITTTMVAAAPVAVAAAAAPAA--AAAPSPATAA-ATAAAVSPAAAG 945



to top

>GCH1_CHICK (P50141) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)|
          Length = 236

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 391 PSPKLAAEAPTATVSCPGVGDGRRGE 468
           PSPKL  E P  +    G GDG RGE
Sbjct: 17  PSPKLGTEKPRVSAGSGGSGDGWRGE 42



to top

>NAC90_ARATH (Q9FMR3) NAC domain-containing protein 90 (ANAC090)|
          Length = 235

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 134 SGHWPAQGSPGSIIPADGXXXXXXXXXLCASGGAPMGQ 247
           SG+W A GSPG +   D          +  +G AP G+
Sbjct: 89  SGYWKATGSPGPVFSKDNKMIGAKKTMVFYTGKAPTGR 126



to top

>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1302

 Score = 24.6 bits (52), Expect(2) = 5.3
 Identities = 26/105 (24%), Positives = 31/105 (29%)
 Frame = +3

Query: 126 SIGVAIGQPKVHRAPSSRPTAGVL*HDAWHFVPXXXXXXXXXXXXPVVEDVPECSSPRGE 305
           SIG A GQ K H+ P  + T           V                +D+ EC+ P   
Sbjct: 305 SIGTAWGQSKCHKCPQLQYTGVQKPGPVRGEVGADCPQGYKRLNSTHCQDINECAMP--- 361

Query: 306 A*PEXXXXXXXXXXXXHGACTNRRGQVHPEPKACCRSPNGHCLVP 440
                           HG C N  G         C  P GH L P
Sbjct: 362 ------------GVCRHGDCLNNPGSYR------CVCPPGHSLGP 388



 Score = 23.5 bits (49), Expect(2) = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 11  PPPNSTVGHCL--TDARSKAPAQHLPPLKKFLH 103
           PP  S   H +  ++A S AP+QHL P  K  H
Sbjct: 234 PPEASVQVHRIESSNAESAAPSQHLLPHPKPSH 266



to top

>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            (hNotch4) [Contains: Notch 4 extracellular truncation;
            Notch 4 intracellular domain]
          Length = 2003

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 100  PRRCVPGATPLEWPLASPRFTGLHHPGRRPACCSTTRGTLCQRRGADG 243
            P+ C P  +P  +  +    TGL  PG R +C  ++ G  CQ+ GA G
Sbjct: 1131 PKGCGP-PSPCLYNGSCSETTGLGGPGFRCSCPHSSPGPRCQKPGAKG 1177



to top

>NAC61_ARATH (Q9M290) Putative NAC domain-containing protein 61 (ANAC061)|
          Length = 228

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 134 SGHWPAQGSPGSIIPADGXXXXXXXXXLCASGGAPMGQ 247
           SG+W A GSPG +   D          +  +G AP G+
Sbjct: 88  SGYWKATGSPGPVFSPDNRVIGVKKTMVFYTGKAPTGR 125



to top

>HAIR_MOUSE (Q61645) Protein hairless|
          Length = 1182

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 114 PGSNSIGVAIGQPKVHRAPSSRP 182
           PGSNS+G  +G P   R PS  P
Sbjct: 295 PGSNSLGYQLGPPATPRCPSPGP 317



to top

>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21|
          Length = 2189

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 376 EGRCIPSPKLAAE---APTATVSCPGVGDGRRG 465
           +GR +P+P+  A    APT+T     +G+GR G
Sbjct: 229 QGRVLPTPQTVAPPATAPTSTTKTANLGEGRAG 261



to top

>LECF_ALEAU (P18891) Fucose-specific lectin (Aleuria aurantia lectin) (AAL)|
          Length = 312

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 AGASREQLHWSGHWPAQGSPGSIIPADG 187
           +G+S  +  WSG W A  S GS +P  G
Sbjct: 140 SGSSIHEYVWSGKWTAGASFGSTVPGTG 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,450,882
Number of Sequences: 219361
Number of extensions: 1594856
Number of successful extensions: 5061
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5047
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top