ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart42h10 |
|---|---|
| Clone Library Name | barley_pub |
>MYBF_ARATH (Q700D9) Putative Myb family transcription factor At1g14600| Length = 255 Score = 81.3 bits (199), Expect = 2e-15 Identities = 41/72 (56%), Positives = 48/72 (66%) Frame = +3 Query: 267 PKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRMGKQT 446 P PRLRWT +LH FV AV LGG KATPK +L+ M VKGLT+ H+KSHLQ YR + T Sbjct: 22 PVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRIT 81 Query: 447 GKETPEQSKDGS 482 PE+S S Sbjct: 82 LLGKPEESSSPS 93
>ARR20_ARATH (Q9LZJ8) Putative two-component response regulator ARR20| Length = 426 Score = 62.0 bits (149), Expect = 9e-10 Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 4/67 (5%) Frame = +3 Query: 270 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTM----GVKGLTLFHLKSHLQKYRMG 437 KPR++WT +LH +F AV ++G EKA PKTIL+ M V+GLT ++ SHLQKYR Sbjct: 211 KPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYR-- 268 Query: 438 KQTGKET 458 Q+ K+T Sbjct: 269 -QSSKKT 274
>ARR1_ARATH (Q940D0) Two-component response regulator ARR1| Length = 690 Score = 62.0 bits (149), Expect = 9e-10 Identities = 32/55 (58%), Positives = 40/55 (72%) Frame = +3 Query: 270 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 434 KPR+ W+ +LH++FV AV QLG EKA PK IL M V GLT ++ SHLQKYR+ Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290
>ARR18_ARATH (Q9FGT7) Two-component response regulator ARR18| Length = 635 Score = 61.6 bits (148), Expect = 1e-09 Identities = 30/55 (54%), Positives = 41/55 (74%) Frame = +3 Query: 270 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 434 KPR+ W+ +LH++FV AV QLG +KA PK IL M ++GLT ++ SHLQKYR+ Sbjct: 194 KPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRL 247
>ARR19_ARATH (Q9M9B9) Putative two-component response regulator ARR19| Length = 407 Score = 61.6 bits (148), Expect = 1e-09 Identities = 28/75 (37%), Positives = 51/75 (68%), Gaps = 3/75 (4%) Frame = +3 Query: 270 KPRLRWTADLHERFVDAVAQLGGPEKATPKTI---LRTMGVKGLTLFHLKSHLQKYRMGK 440 KPR+ WT +LH++F++A+ +GG EKA PK + L+ M ++G+T ++ SHLQK+R+ Sbjct: 215 KPRMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQKHRINL 274 Query: 441 QTGKETPEQSKDGSY 485 + + P+Q++ + Sbjct: 275 EE-NQIPQQTQGNGW 288
>ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Receiver-like| protein 5) Length = 664 Score = 60.8 bits (146), Expect = 2e-09 Identities = 31/55 (56%), Positives = 40/55 (72%) Frame = +3 Query: 270 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 434 KPR+ W+ +LH++FV AV QLG +KA PK IL M V GLT ++ SHLQKYR+ Sbjct: 216 KPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRI 269
>ARR12_ARATH (P62598) Two-component response regulator ARR12| Length = 596 Score = 56.6 bits (135), Expect = 4e-08 Identities = 31/58 (53%), Positives = 40/58 (68%) Frame = +3 Query: 261 ADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 434 A K R+ WT +LH++FV AV QLG EKA PK IL M V+ LT ++ SHLQK+R+ Sbjct: 192 AQKKQRVVWTVELHKKFVAAVNQLGY-EKAMPKKILDLMNVEKLTRENVASHLQKFRL 248
>ARR11_ARATH (Q9FXD6) Two-component response regulator ARR11 (Receiver-like| protein 3) Length = 521 Score = 56.2 bits (134), Expect = 5e-08 Identities = 28/59 (47%), Positives = 39/59 (66%) Frame = +3 Query: 258 TADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 434 ++ K R+ W+ +LH +FV+AV Q+G KA PK IL M V LT ++ SHLQKYR+ Sbjct: 189 SSSKKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 247
>ARR10_ARATH (O49397) Two-component response regulator ARR10 (Receiver-like| protein 4) Length = 552 Score = 56.2 bits (134), Expect = 5e-08 Identities = 30/59 (50%), Positives = 39/59 (66%) Frame = +3 Query: 258 TADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 434 TA KPR+ WT +LH +F+ AV LG E+A PK IL M V LT ++ SHLQK+R+ Sbjct: 179 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRV 236
>ARR14_ARATH (Q8L9Y3) Two-component response regulator ARR14| Length = 382 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/69 (43%), Positives = 44/69 (63%) Frame = +3 Query: 270 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRMGKQTG 449 K R+ W+ +LH++FV+AV +LG +KA PK IL M V GL+ ++ SHLQK+R+ + Sbjct: 200 KSRVVWSIELHQQFVNAVNKLG-IDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRL 258 Query: 450 KETPEQSKD 476 QS D Sbjct: 259 SGEASQSND 267
>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2| (Pseudo-response regulator 2) (TOC2 protein) Length = 535 Score = 53.5 bits (127), Expect = 3e-07 Identities = 31/86 (36%), Positives = 49/86 (56%) Frame = +3 Query: 186 IHHRADGPGPGEVPRSGGAPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTI 365 IH + D P + +S G ++ + ++ WT +LH++FV AV QL G ++A P I Sbjct: 270 IHKKEDETKP--INKSSGIKNVSGNKTSRKKVDWTPELHKKFVQAVEQL-GVDQAIPSRI 326 Query: 366 LRTMGVKGLTLFHLKSHLQKYRMGKQ 443 L M V LT ++ SHLQK+R ++ Sbjct: 327 LELMKVGTLTRHNVASHLQKFRQHRK 352
>ARR21_ARATH (Q9LYP5) Putative two-component response regulator ARR21| Length = 592 Score = 50.1 bits (118), Expect = 4e-06 Identities = 30/80 (37%), Positives = 43/80 (53%) Frame = +3 Query: 195 RADGPGPGEVPRSGGAPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRT 374 R GP + S P+ K +++WT LH+ F+ A+ +G +KA PK IL Sbjct: 203 RKPNGGPSDDGESMSQPA------KKKKIQWTDSLHDLFLQAIRHIG-LDKAVPKKILAF 255 Query: 375 MGVKGLTLFHLKSHLQKYRM 434 M V LT ++ SHLQKYR+ Sbjct: 256 MSVPYLTRENVASHLQKYRI 275
>ARR13_ARATH (Q9ZVD3) Putative two-component response regulator ARR13| Length = 572 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/55 (41%), Positives = 33/55 (60%) Frame = +3 Query: 270 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 434 K ++ WT L + F+ A+ +G +K PK IL M V LT ++ SHLQKYR+ Sbjct: 225 KKKIWWTNPLQDLFLQAIQHIGY-DKVVPKKILAIMNVPYLTRENVASHLQKYRL 278
>APRR4_ARATH (Q9FJ16) Putative two-component response regulator-like APRR4| (Pseudo-response regulator 4) Length = 292 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/51 (43%), Positives = 32/51 (62%) Frame = +3 Query: 270 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQ 422 K R+ W +LH+ F++AV LG E+A PK IL M V ++ ++ SHLQ Sbjct: 223 KRRVVWDEELHQNFLNAVDFLG-LERAVPKKILDVMKVDYISRENVASHLQ 272
>FIBA_RAT (P06399) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide| A] Length = 782 Score = 32.7 bits (73), Expect = 0.61 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 12/79 (15%) Frame = -2 Query: 340 GPPSWATASTKRSWRSAVQR------RRG------LGSAVSTRLGAPPERGTSPGPGPSA 197 GPP W + R R ++R RG G + + G+ E +PG G S Sbjct: 245 GPPEWKALTEMRQMRMELERPGKDGASRGDLPGDSRGDSATRGPGSKIENPMTPGHGGSG 304 Query: 196 RWWIRPGGNISSSDQEGRW 140 W RPG + S SD G W Sbjct: 305 YW--RPGSSGSGSD--GNW 319
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 32.0 bits (71), Expect = 1.0 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Frame = +3 Query: 99 LGTKEEKVSLSVPL-----HLPSWSEEEMFPPGLIHHRADGPGPGEVPRSGGAPSLVLTA 263 +G++E+ + S PL H P PP HH A P P E+ +GG+P Sbjct: 980 VGSREKSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEM-ETGGSPD----- 1033 Query: 264 DPKPRL 281 DP PRL Sbjct: 1034 DPPPRL 1039
>T240L_MOUSE (Q6JPI3) Thyroid hormone receptor-associated protein 2 (Thyroid| hormone receptor-associated protein complex 240 kDa component-like) Length = 2207 Score = 31.6 bits (70), Expect = 1.4 Identities = 23/76 (30%), Positives = 31/76 (40%) Frame = -2 Query: 349 AFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSARWWIRPGGN 170 A SGPP + AS + G G V + + T PG A PG + Sbjct: 1579 ASSGPPGSSAASAPGITQMNTTSSSGFGGGVGGQNPSAGGSSTDRTPGNVACGDTEPGQS 1638 Query: 169 ISSSDQEGRWRGTERE 122 + S Q+G+ TERE Sbjct: 1639 CTQSSQDGQDSVTERE 1654
>SF3B1_MOUSE (Q99NB9) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) Length = 1304 Score = 31.2 bits (69), Expect = 1.8 Identities = 24/65 (36%), Positives = 29/65 (44%) Frame = -2 Query: 370 LKIVFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSARW 191 LK+V G A S PPS KR W + G A +L + + T PG PS RW Sbjct: 181 LKVVNGAAASQPPS----KRKRRWDQTADQTPG---ATPKKLSSWDQAET-PGHTPSLRW 232 Query: 190 WIRPG 176 PG Sbjct: 233 DETPG 237
>SF3B1_HUMAN (O75533) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) Length = 1304 Score = 31.2 bits (69), Expect = 1.8 Identities = 24/65 (36%), Positives = 29/65 (44%) Frame = -2 Query: 370 LKIVFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSARW 191 LK+V G A S PPS KR W + G A +L + + T PG PS RW Sbjct: 181 LKVVNGAAASQPPS----KRKRRWDQTADQTPG---ATPKKLSSWDQAET-PGHTPSLRW 232 Query: 190 WIRPG 176 PG Sbjct: 233 DETPG 237
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 31.2 bits (69), Expect = 1.8 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = -2 Query: 334 PSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPS-ARWWIRPGG 173 PS AT A Q G+A + + G P+ +PGPGP+ + RPGG Sbjct: 3824 PSTATGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPTPGPGPAGVKAGARPGG 3878
>ZN759_HUMAN (Q8NAF0) Zinc finger protein 579| Length = 562 Score = 31.2 bits (69), Expect = 1.8 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +3 Query: 135 PLHLPSWSEEEMFPPGLIHHRADGPGPGEVPRSGGAPSLVLTADPKPRLRWTA-DLHERF 311 P L + EEE P L + + + P PG P+S AP + L+A +A ++ E Sbjct: 488 PPPLKAEQEEEGLPLPLANIKEEPPSPGTPPQSPPAPPVFLSASCFDSQDHSAFEMEEEE 547 Query: 312 VDAVAQLGG 338 VD+ A L G Sbjct: 548 VDSKAHLRG 556
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 30.8 bits (68), Expect = 2.3 Identities = 15/24 (62%), Positives = 15/24 (62%) Frame = -2 Query: 274 GLGSAVSTRLGAPPERGTSPGPGP 203 GLGSA LG PP G PGPGP Sbjct: 811 GLGSAPG-HLGGPPAFGPGPGPGP 833
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 30.8 bits (68), Expect = 2.3 Identities = 15/24 (62%), Positives = 15/24 (62%) Frame = -2 Query: 274 GLGSAVSTRLGAPPERGTSPGPGP 203 GLGSA LG PP G PGPGP Sbjct: 811 GLGSAPG-HLGGPPAFGPGPGPGP 833
>PGP_PYRKO (Q5JDB7) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 239 Score = 30.8 bits (68), Expect = 2.3 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 22/133 (16%) Frame = +3 Query: 123 SLSVPLHLPSWSEEEMFPPGLIHHRADGPGPGEVPRSGGAPSL---------VLTADPKP 275 SL VP+ L + + + I GP GE GGA S+ LT + Sbjct: 34 SLGVPVMLVTGNTVQFGEAAAILIGTSGPVVGE---DGGALSIKEGKLRKRVYLTNMDEE 90 Query: 276 RLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVK---------GLTLFHLKS----H 416 + W +L +R+ +A+ PE+ +LRT+ VK GL L + S H Sbjct: 91 WILW-GELKKRYPEALLSFSMPERKAGLVVLRTVPVKAVRELIKELGLNLIAVDSGFAIH 149 Query: 417 LQKYRMGKQTGKE 455 ++K + K TG E Sbjct: 150 IKKPWINKGTGIE 162
>KR74_ICHV1 (Q00095) Gene 74 protein kinase (EC 2.7.11.1)| Length = 673 Score = 30.4 bits (67), Expect = 3.0 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 16/84 (19%) Frame = +3 Query: 84 LDPSLLGTKEEKVSLSV---------------PLHLPSWSEEEMFPPGLIHHRADGPGPG 218 ++P GT+ EK + +V P P+ E ++P HR GPGP Sbjct: 357 VNPEGFGTRLEKNATAVDGGFIGLMGKCLALYPQFRPTARELLVYPRYATLHRISGPGPA 416 Query: 219 EVPRSGGAPSL-VLTADPKPRLRW 287 P G AP++ V++ + R RW Sbjct: 417 PPPVIGAAPAVRVVSNAVEFRSRW 440
>PRP45_CANGA (Q6FIT9) Pre-mRNA-splicing factor PRP45 (Pre-mRNA-processing| protein 45) Length = 414 Score = 30.0 bits (66), Expect = 4.0 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +3 Query: 105 TKEEKVSLSVPLHLPSWSEEEMFPPGLIHHRADGPGPGEV 224 TKEE+ ++P + SW + GL H A G G V Sbjct: 172 TKEERAKWNIPAAVSSWKNPMGYTVGLKHRAAHGKKTGNV 211
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = -2 Query: 271 LGSAVSTRLGAPPERGTSPGPGPSARWWIRPGGNISSSDQEG 146 LG A + PP G P P + ++ PG N+ SSD G Sbjct: 331 LGLAPPPHMQGPPPGGPPPAPHVNPAFFPPPGNNMPSSDGRG 372
>EDEM1_MOUSE (Q925U4) ER degradation-enhancing alpha-mannosidase-like 1| Length = 652 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = -2 Query: 250 RLGAPPERGTSPGP---GPSARWWIRPGGNISSSDQEGRWRG 134 RL PPE G +PGP GP+ + GG + E R+ G Sbjct: 74 RLETPPEPGPTPGPGVCGPAHWGYALGGGGCGPDEYERRYSG 115
>SYS_THETN (Q8RDJ5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 425 Score = 29.6 bits (65), Expect = 5.2 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = +3 Query: 99 LGTKEEK--VSLSVPLHLPSWSEEEMFPPGLIHHRADGPGPGEVPR 230 LG + E+ ++ + LH+ +E+FPP L+H R+ G G++P+ Sbjct: 168 LGARLERALINFMLDLHIEKHGYKEVFPPFLVHRRSMF-GTGQLPK 212
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 29.6 bits (65), Expect = 5.2 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = -2 Query: 343 SGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSARWWIRP----G 176 SGP S STK S ++ ++ GL A G+ GT PG G RP G Sbjct: 187 SGPGS---GSTKVSVAASSAQQSGLQGATGAGGGSSSTPGTQPGSGAGGAIAARPVSAMG 243 Query: 175 GNISSS 158 G +SS+ Sbjct: 244 GTVSST 249
>CRTI_PARSN (P54978) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene| desaturase) Length = 501 Score = 29.6 bits (65), Expect = 5.2 Identities = 21/62 (33%), Positives = 27/62 (43%) Frame = +3 Query: 129 SVPLHLPSWSEEEMFPPGLIHHRADGPGPGEVPRSGGAPSLVLTADPKPRLRWTADLHER 308 S+ LH P ++ EM PPG+ H P VP G A P+ R A L ER Sbjct: 356 SLYLHSPCTTDPEMAPPGMSTHYVLAP----VPHLGRADIDWAVEGPRYADRILASLEER 411 Query: 309 FV 314 + Sbjct: 412 LI 413
>PERQ1_MOUSE (Q99MR1) PERQ amino acid rich with GYF domain protein 1| Length = 1011 Score = 29.6 bits (65), Expect = 5.2 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Frame = -2 Query: 343 SGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPER------GTSPGPGPSARWWIR 182 +GP S +WRS + + GS RLGA P R TSP GP + W Sbjct: 154 AGPRKEHARSDSENWRSLREEQEDDGS---WRLGAGPRRDGDRWRSTSPDGGPRSAGWRE 210 Query: 181 PG 176 G Sbjct: 211 HG 212
>Y2213_MYCBO (P67474) Hypothetical protein Mb2213c| Length = 385 Score = 29.6 bits (65), Expect = 5.2 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Frame = +3 Query: 105 TKEEKVSLSVPLHLPS------WSEEEMFPPGLIHHRADGPGPGEVPRSGGAPSL 251 T EE+ +L+ P +P+ + PPG DGP PG P GG P L Sbjct: 209 TPEERTALADPGPVPAVAAIAPGAPPAALPPGA--PPGDGPAPGVAPPPGGMPGL 261
>Y2190_MYCTU (P67473) Hypothetical protein Rv2190c/MT2245| Length = 385 Score = 29.6 bits (65), Expect = 5.2 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Frame = +3 Query: 105 TKEEKVSLSVPLHLPS------WSEEEMFPPGLIHHRADGPGPGEVPRSGGAPSL 251 T EE+ +L+ P +P+ + PPG DGP PG P GG P L Sbjct: 209 TPEERTALADPGPVPAVAAIAPGAPPAALPPGA--PPGDGPAPGVAPPPGGMPGL 261
>TLE1_HUMAN (Q04724) Transducin-like enhancer protein 1 (ESG1) (E(Sp1) homolog)| Length = 770 Score = 29.3 bits (64), Expect = 6.8 Identities = 18/58 (31%), Positives = 25/58 (43%) Frame = -2 Query: 349 AFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSARWWIRPG 176 A S P S A++++ S +S S + P R P PG SA +RPG Sbjct: 283 ASSSPASTASSASSTSLKSKEMSLHEKASTPVLKSSTPTPRSDMPTPGTSATPGLRPG 340
>PYRD_MYCLE (P46727) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 356 Score = 29.3 bits (64), Expect = 6.8 Identities = 22/70 (31%), Positives = 29/70 (41%) Frame = -2 Query: 418 R*LFKWKSVSPFTPIVLKIVFGVAFSGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGA 239 R L +W + P P++ VFGV F GP A K G G A + A Sbjct: 35 RRLLRWV-LGPTDPVLASTVFGVRFPGPLGLAAGFDKDGMGLLAWGALGFGYAEVGTVTA 93 Query: 238 PPERGTSPGP 209 P+ G +P P Sbjct: 94 YPQPG-NPAP 102
>KKCC2_RAT (O88831) Calcium/calmodulin-dependent protein kinase kinase 2 (EC| 2.7.11.17) (Calcium/calmodulin-dependent protein kinase kinase beta) (CaM-kinase kinase beta) (CaM-KK beta) (CaMKK beta) Length = 587 Score = 29.3 bits (64), Expect = 6.8 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = +3 Query: 102 GTKEEKVSLSVPLHL----PSWSEEEMFPPGLIHHRADGPGPGEVPRSGGAPSLV 254 G++ E+ SLS P +L P+ E + P R PGP P GG +LV Sbjct: 501 GSRREERSLSAPGNLLTKKPTREWEPLSEPKEARQRRQPPGPRASPCGGGGSALV 555
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 29.3 bits (64), Expect = 6.8 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -2 Query: 343 SGPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPS-ARWWIRPGG 173 +GPP AS+ + +A + + G P+ T+PGPGP+ A+ RPGG Sbjct: 3848 AGPPRAEQASSSKP-----------PAAKAPQQGRAPQAQTTPGPGPAGAKPGARPGG 3894
>STUA_EMENI (P36011) Cell pattern formation-associated protein stuA| Length = 622 Score = 29.3 bits (64), Expect = 6.8 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +3 Query: 174 PPGLIHHRADGPGPGEVPRSGGAPSL 251 PP L HH P P + + GG PSL Sbjct: 266 PPSLHHHSLQTPVPSHMSQPGGRPSL 291
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = +3 Query: 141 HLPSWSEEEMFPPGLIHHRADGPGPGEVPRSGGAPSLVLTADPKPRL 281 H P PP HH A P P E+ +GG+P DP PRL Sbjct: 1007 HPPHHHHHHAPPPQPHHHHAHPPHPPEM-ETGGSPD-----DPPPRL 1047
>BLNK_MOUSE (Q9QUN3) B-cell linker protein (Cytoplasmic adapter protein)| (B-cell adapter containing SH2 domain protein) (B-cell adapter containing Src homology 2 domain protein) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (Slp-65) (Lymp Length = 457 Score = 28.9 bits (63), Expect = 8.9 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 9/54 (16%) Frame = +3 Query: 147 PSWSEEEMFPPGLIHHRADG---------PGPGEVPRSGGAPSLVLTADPKPRL 281 P+ S + M PPG + R G P +PR+G P+ L P P L Sbjct: 212 PNSSSKHMSPPGTVAGRNSGVWDSKSSLPAAPSPLPRAGKKPATPLKTTPVPPL 265
>IAA3_ORYSA (Q5NB25) Auxin-responsive protein IAA3 (Indoleacetic acid-induced| protein 3) Length = 263 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 417 LQKYRMGKQTGKETPEQSKDGSYLL 491 L+K +G TGKE E KDG Y+L Sbjct: 189 LEKMFIGFSTGKEGAENQKDGEYVL 213
>ZF106_MOUSE (O88466) Zinc finger protein 106 (Zfp-106) (Zinc finger protein| 474) (H3a minor histocompatibility antigen) (Son of insulin receptor mutant) Length = 1888 Score = 28.9 bits (63), Expect = 8.9 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Frame = -2 Query: 340 GPPSWATASTKRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPG----PSARWWIRPGG 173 G PSW ++ +W+S+V RG S LG ++G + P + W + Sbjct: 234 GFPSWHMNNSNGNWKSSV---RGTNSWNYNGLGDKFQQGRNRNPNYQMEDMTKMWNKKSN 290 Query: 172 NISSSDQEG-RWRGTERETFSSFVPKSEG 89 S QE +W+ +R+ + + EG Sbjct: 291 KPSKYSQERCKWQRQDRDKAAKYRSPPEG 319
>KKCC2_MOUSE (Q8C078) Calcium/calmodulin-dependent protein kinase kinase 2 (EC| 2.7.11.17) (Calcium/calmodulin-dependent protein kinase kinase beta) (CaM-kinase kinase beta) (CaM-KK beta) (CaMKK beta) Length = 588 Score = 28.9 bits (63), Expect = 8.9 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = +3 Query: 102 GTKEEKVSLSVPLHL----PSWSEEEMFPPGLIHHRADGPGPGEVPRSGGAPSLV 254 G++ E+ SLS P +L P+ E + P R PGP P GG +LV Sbjct: 502 GSRREERSLSAPGNLLTKKPTREWEPLSEPKEARQRRQPPGPRAGPCGGGGSALV 556
>STAG3_RAT (Q99M76) Cohesin subunit SA-3 (Stromal antigen 3) (Stromalin 3) (SCC3| homolog 3) Length = 1256 Score = 28.9 bits (63), Expect = 8.9 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Frame = -2 Query: 343 SGPPSWATAST----KRSWRSAVQRRRGLGSAVSTRLGAPPERGTSPGPGPSARWWIRPG 176 SGP + ST ++S R+ +R++G G G P G PGPGP PG Sbjct: 1114 SGPTTPTLTSTAVKRRQSPRTVGKRQKG-GPGPGPGPGPGPGPGPGPGPGPG------PG 1166 Query: 175 GNISSSDQEGRWRGTERETFSS 110 + S Q GT+R SS Sbjct: 1167 PELICSQQ---LSGTQRLKMSS 1185
>STK36_PONPY (Q5RAJ5) Serine/threonine-protein kinase 36 (EC 2.7.11.1) (Fused| homolog) Length = 1315 Score = 28.9 bits (63), Expect = 8.9 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Frame = +3 Query: 252 VLTADPKPRLRWTADLHERF----VDAVAQLGGPEKATPKT 362 +LT DP+ RL W L+ F V + + GP+ TP T Sbjct: 234 LLTKDPRQRLSWPDLLYHPFIAGHVTIITETAGPDLGTPFT 274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,210,889 Number of Sequences: 219361 Number of extensions: 1315157 Number of successful extensions: 5229 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 4675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5171 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
